Phylogenetics and temporal diversification of the earliest true flies (Insecta: Diptera) based on multiple nuclear genes

Systematic Entomology

Volumn 33, Issue 4, 2008, Pages 668-687

  Bertone, Matthew A ^a   Courtney, Gregory W ^b   Wiegmann, Brian M ^a  

^a NORTH CAROLINA STATE UNIVERSITY   (United States)

^b IOWA STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BAYESIAN ANALYSIS; CLADISTICS; DIVERGENCE; DNA; FLY; FOSSIL; MORPHOLOGY; PROTEIN;

AXYMYIIDAE; BIBIONOMORPHA; BLEPHARICERIDAE; BRACHYCERA; CULICOMORPHA; DEUTEROPHLEBIIDAE; DIPTERA; INSECTA; NEMATOCERA; NYMPHOMYIIDAE; PERISSOMMATIDAE; PSYCHODIDAE; PSYCHODOMORPHA; PTYCHOPTERIDAE; PTYCHOPTEROMORPHA; SIMULIIDAE; TANYDERIDAE; THAUMALEIDAE; TIPULIDAE; TIPULOMORPHA; TRICHOCERIDAE;

EID: 53149140277     PISSN: 03076970     EISSN: 13653113     Source Type: Journal    
DOI: 10.1111/j.1365-3113.2008.00437.x     Document Type: Article

References (81)

1. Amorim, D.S 1993) A phylogenetic analysis of the basal groups of Bibionomorpha, with a critical reanalysis of the wing vein homology. Revista Brasiliensis Biologia, 52, 379 399.
2. Amorim, D.S 2000) A new phylogeny and phylogenetic classification for the Canthyloscelidae (Diptera: Psychodomorpha). Canadian Journal of Zoology, 78, 1067 1077.
3. Amorim, D.S. Grimaldi, D.A 2006) Valeseguyidae, a new family of Diptera in the Scatopsoidea, with a new genus in Cretaceous amber from Myanmar. Systematic Entomology, 31, 508 516.
4. Amorim, D.S. Rindal, E 2007) Phylogeny of the Mycetophiliformia, with proposal of the subfamilies Heterotrichinae, Ohakuneinae, and Chiletrichinae for the Rangomaramidae (Diptera, Bibionomorpha). Zootaxa, 1535, 1 92.
5. Amorim, D.S. Yeates, D.K 2006) Pesky gnats: ridding dipteran classification of the Nematocera. Studia Dipterologica, 13, 3 9.
6. Ansorge, J 1994) Tanyderidae and Psychodidae (Insecta: Diptera) from the Lower Jurassic of northeastern Germany. Palaeontologische Zeitschrift, 68, 199 210.
7. Anthon, H 1943) Der Kopfbau der Larven einiger nematoceren Dipterenfamilien: Rhyphidae, Trichoceridae, Psychodidae und Ptychopteridae. Spolia Zoologica Musei Hauniensis, 3, 1 61.
8. Barnes, H.F 1946 1956) Gall Midges of Economic Importance, Vol. 1-7. Crosby Lockwood & Son Ltd., London.
9. Beutel, R.G. Pohl, H 2006) Endopterygote systematics - where do we stand and what is the goal (Hexapoda, Arthropoda)? Systematic Entomology, 31, 202 219.
10. Blagoderov, V.A 1997) Fungus gnats of the tribe Gnoristini (Diptera, Mycetophilidae) from the Lower Cretaceous of Transbaikalia. Paleontological Journal (Paleontologicheskii Zhurnal), 31, 609 615.
11. Blagoderov, V.A 1998a) Fungus gnats (Diptera, Mycetophilidae) from the Lower Cretaceous of Mongolia. Paleontological Journal (Paleontologicheskii Zhurnal), 32, 598 604.
12. Blagoderov, V.A 1998b) Fungus gnats of the tribe Gnoristini and Leiini (Diptera, Mycetophilidae) from the Lower Cretaceous of Transbaikalia. Paleontological Journal (Paleontologicheskii Zhurnal), 32, 58 62.
13. Blagoderov, V., Grimaldi, D.A. Fraser, N.C 2007) How time flies for flies: diverse Diptera from the Triassic of Virginia and early radiation of the order. American Museum Novitates, 3572, 1 39.
14. Caterino, M.S., Cho, S. Sperling, F.A.H 2000) The current state of insect molecular systematics: a thriving Tower of Babel. Annual Review of Entomology, 45, 1 54.
15. Chandler, P.J 2002) Heterotricha Loew and allied genera (Diptera: Sciaroidea): Offshoots of the stem group of Mycetophilidae and/or Sciaridae? Annales de la Societe Entomologique de France, 38, 101 144.
16. Colless, D.H 1962) A new Australian genus and family of Diptera (Nematocera: Perissommatidae). Australian Journal of Zoology, 10, 519 35.
17. Colless, D.H 1969) The genus Perissomma (Diptera: Perissommatidae), with new species from Australia and Chile. Australian Journal of Zoology, 17, 719 728.
18. Colless, D.H. McAlpine, D.K 1991) Diptera (Flies). Insects of Australia (ed. by I. D. Naumann and P. B. Carne Vol. 1, pp. 717 786. Melbourne University Press, Melbourne.
19. Courtney, G.W 1990) Cuticular morphology of larval mountain midges (Diptera: Deuterophlebiidae): implications for the phylogenetic relationships of Nematocera. Canadian Journal of Zoology, 68, 556 578.
20. Courtney, G.W 1991) Phylogenetic analysis of the Blepharicerimorpha, with special reference to the mountain midges (Diptera: Deuterophlebiidae). Systematic Entomology, 16, 137 172.
21. Courtney, G.W 1994a) Biosystematics of the Nymphomyiidae (Insecta: Diptera): life history, morphology, and phylogenetic relationships. Smithsonian Contributions to Zoology, 550, 1 41.
22. Courtney, G.W 1994b) Revision of Palaearctic mountain midges (Diptera: Deuterophlebiidae), with phylogenetic and biogeographic analyses of world species. Systematic Entomology, 19, 1 24.
23. Dahl, C 1980) Comparison of postembryonic organization of the genital segments Trichoceridae, Tipulidae, and Anisopodidae (Diptera, Nematocera). Zoologica Scripta, 9, 165 185.
24. Danforth, B.N., Lin, C.P. Fang, J 2005) How do insect nuclear ribosomal genes compare to protein-coding genes in phylogenetic utility and nucleotide substitution patterns? Systematic Entomology, 30, 549 562.
25. Downes, J.A. Colless, D.H 1967) Mouthparts of the biting and blood-sucking type in Tanyderidae and Chironomidae (Diptera). Nature, 214, 1355 1356.
26. Downes, W.L. Jr. Dahlem, G.A 1987) Keys to the evolution of Diptera: role of Homoptera. Environmental Entomology, 16, 847 854.
27. Edwards, F.W 1926) The phylogeny of nematocerous Diptera: a critical review of some recent suggestion. Verh. II Internationaler Entomologen-Kongress, Zürich. II, 111 130.
28. Evenhuis, N.L., Pape, T., Pont, A.C. Thompson, F.C eds) 2007. Biosystematic Database of World Diptera, Version 9.5 WWW document URL http://www.diptera.org/biosys.htm accessed April 2008 1978) Cases in which parsimony or compatibility methods will be positively misleading. Systematic Zoology, 27, 401 410.
29. Friedrich, M. Tautz, D 1997a) Evolution and phylogeny of the Diptera: a molecular phylogenetic analysis using 28S rDNA sequences. Systematic Biology, 46, 674 698.
30. Friedrich, M. Tautz, D 1997b) An episodic change of rDNA nucleotide substitution rate has occurred during the emergence of the insect order Diptera. Molecular Biology and Evolution, 14, 644 653.
31. Griffiths, G 1990) Book review: Manual of Nearctic Diptera, Vol. 3. Quaestiones Entomologicae, 26, 117 130.
32. Grimaldi, D.A. Engel, M.S 2005) The Evolution of Insects. Cambridge University Press, Cambridge.
33. Hackman, W. Väisänen, R 1982) Different classification systems in the Diptera. Annales Zoologici Fennici, 19, 209 219.
34. Hennig, W 1973) Diptera (Zweiflügler). Handbuch der Zoologie, Bd. 4: Arthropoda, 2. Hälfter: Insecta, 2. Aufl., 2 Teil Spezielles (ed. by J. G. Helmcke, D. Starck and H. Wermuth p. iii & 377. Walter de Gruyter, Berlin.
35. Hennig, W 1981) Insect Phylogeny. Wiley, New York.
36. Hippa, H. Vilkamaa, P 2005) The genus Sciarotricha gen.n. (Sciaridae) and the phylogeny of recent and fossil Sciaroidea (Diptera). Insect Systematics and Evolution, 36, 121 144.
37. Hora, S.L 1930) Ecology, bionomics and evolution of torrential fauna with special reference to the organs of attachment. Philosophical Transactions of the Royal Society London Series B, 218, 171 282.
38. Hünefeld, F. Beutel, R.G 2005) The sperm pumps of Strepsiptera and Antliophora (Hexapoda). Journal of Zoological Systematics and Evolutionary Research, 43, 297 306.
39. Jaschhof, M. Didham, R.K 2002) Rangomaramidae fam. nov. from New Zealand and its implications for the phylogeny of the Sciaroidea (Diptera: Bibionomorpha). Studia Dipterologica Supplement, 11, 1 60.
40. Kjer, K.M., Baldridge, G.D. Fallon, A.M 1994) Mosquito large subunit ribosomal RNA: simultaneous alignment of primary and secondary structure. Biochimica et Biophysica Acta, 1217, 147 155.
41. Kristensen, N.P 1981) Phylogeny of insect orders. Annual Review of Entomology, 26, 135 157.
42. Krzeminski, W 1992a) The oldest Polyneura (Diptera) and their importance to the phylogeny of the group. Acta Zoologica Cracoviensia, 35, 45 52.
43. Krzeminski, W 1992b) Triassic and Lower Jurassic stage of Diptera evolution. Mitteilungen der Schweizerischen Entomologischen Gesellschaft, 65, 39 59.
44. Krzeminski, W. Jarzembowski, E 1999) Anne triassica, n.sp., the oldest representative of Chironomidae. Polskie Pismo Entomologiczne, 68, 445 449.
45. Krzeminski, W. Krzeminska, E 2003) Triassic Diptera: descriptions, revisions and phylogenetic relations. Acta Zoologica Cracoviensia, 46, 153 184.
46. Krzeminski, W., Krzeminska, E. Papier, F 1994) Grauvogelia arzvilleriana sp. n. - the oldest Diptera species (Lower/Middle Triassic of France). Polskie Pismo Entomologiczne, 65, 267 274.
47. Labandeira, C.C 2005) Fossil history and evolutionary ecology of Diptera and their associations with plants. The Evolutionary Biology of Flies (ed. by D. K. Yeates and B. M. Wiegmann pp. 14 44. Columbia University Press, New York.
48. Leathers, J.W. Judd, D 2002) Phylogenetic placement of the primitive crane flies (Diptera: Ptychopteromorpha: Tanyderidae) based on 18S ribosomal RNA. Abstracts of the 20th Annual Meeting of the Willi Hennig Society (organized by D. Judd & A. Brower). Cladistics, 18, 218 236.
49. Madwar, S 1937) Biology and morphology of the immature stages of Mycetophilidae (Diptera, Nematocera). Philosophical Transactions of the Royal Society of London Series B, Biological Sciences, 227, 1 110.
50. Matile, L 1990) Recherhes sur la systématique et l'évolution des Keroplatidae. Mémoire du Museum National d'Histoire Naturelle, 148, 1 682.
51. Meier, R 2005) Role of dipterology in phylogenetic systematics: the insight of Willi Hennig. The Evolutionary Biology of Flies (ed. by D. K. Yeates and B. M. Wiegmann pp. 45 61. Columbia University Press, New York.
52. Michelsen, V 1996) Neodiptera: new insights into the adult morphology and higher level phylogeny of Diptera (Insecta). Zoological Journal of the Linnaean Society, 117, 71 102.
53. Miller, B.R., Crabtree, M.B. Savage, H.M 1997) Phylogenetic relationships of the Culicomorpha inferred from 18S and 5.8S ribosomal DNA sequences (Diptera: Nematocera). Insect Molecular Biology, 6, 105 114.
54. Moulton, J.K 2000) Molecular sequence data resolves basal divergences within Simuliidae (Diptera). Systematic Entomology, 25, 95 113.
55. Moulton, J.K. Wiegmann, B.M 2004) Evolution and phylogenetic utility of CAD (rudimentary) among Mesozoic-aged eremoneuran Diptera (Insecta). Molecular Phylogenetics and Evolution, 31, 363 378.
56. Mullen, G. Durden, L eds 2002) Medical and Veterinary Entomology. Academic Press, London.
57. Oosterbroek, P. Courtney, G 1995) Phylogeny of the nematocerous families of Diptera (Insecta). Zoological Journal of the Linnaean Society, 115, 267 311.
58. Oosterbroek, P. Theowald, B 1991) Phylogeny of the Tipuloidea based on characters of larvae and pupae (Diptera, Nematocera) with an index to the literature except Tipulidae. Tijdschrift Voor Entomologie, 134, 211 267.
59. Pawlowski, J., Szadziewski, R., Kmieciak, D., Fahrni, J. Bittar, G 1996) Phylogeny of the infraorder Culicomorpha (Diptera: Nematocera) based on 28S RNA gene sequences. Systematic Entomology, 21, 167 178.
60. Posada, D. Crandall, K.A 1998) Modeltest: testing the model of DNA substitution. Bioinformatics, 14, 917 818.
61. Rambaut, A 1996) Se-Al: Sequence Alignment Editor WWW document URL http://evolve.zoo.ox.ac.uk/ accessed April 2008 Drummond, A.J 2007) Tracer v1.4 WWW document URL http://beast.bio.ed.ac.uk/Tracer accessed April 2008 1974) The Historical Development of Diptera [English edition]. University of Alberta Press, Edmonton, Alberta, Canada.
62. Ronquist, F. Huelsenbeck, J.P 2003) MRBAYES 3: Bayesian phylogenetic inference under mixed models. Bioinformatics, 19, 1572 1574.
63. Rutschmann, F., Eriksson, T., Abu Salim, K. Conti, E 2007) Assessing calibration uncertainty in molecular dating: the assignment of fossils to alternative calibration points. Systematic Biology, 56, 591 608.
64. Sæther, O.A 2000) Phylogeny of Culicomorpha (Diptera). Systematic Entomology, 25, 223 234.
65. Schremmer, F 1951) Die mundteile der Brachycerenlarven und der kopfbau der larven von Stratiomys chamaeleon L. Österreichische Zoologische Zeitschrift 3, 326 397.
66. Shcherbakov, D.E., Lukashevich, E.D. Blagoderov, V.A 1995) Triassic Diptera and the initial radiation of the order. International Journal of Dipterological Research, 6, 75 115.
67. Sinclair, B.J 1992) A phylogenetic interpretation of the Brachycera (Diptera) based on the larval mandible and associated mouthpart structures. Systematic Entomology, 17, 233 252.
68. Sinclair, B.J., Borkent, A. Wood, D.M 2007) The male genital tract and aedeagal components of the Diptera with a discussion of their phylogenetic significance. Zoological Journal of the Linnean Society, 150, 711 742.
69. Swofford, D.L 2003) PAUP*, Phylogenetic Analysis Using Parsimony (*and Other Methods), Version 4.0. Sinauer Associates, Sunderland.
70. Thorne, J.L. Kishino, H 2002) Divergent time and evolutionary rate estimation with multilocus data. Systematic Biology, 51, 689 702.
71. Vockeroth, J.R 1981) Mycetophilidae. Manual of Nearctic Diptera (ed. by J. F. McAlpine, B. V. Peterson, G. E. Shewell, H. J. Teskey, J. R. Vockeroth and D. M. Wood Vol. 1, pp. 223 246. Research Branch Agriculture Canada Monograph 27, Ottawa.
72. Wiegmann, B.M., Tsaur, S.C., Webb, D.W., Yeates, D.K. Cassel, B.K 2000) Monophyly and relationships of the Tabanomorpha (Diptera: Brachycera) based on 28S ribosomal gene sequences. Annals of the Entomological Society of America, 93, 1031 1038.
73. Wiegmann, B.M., Yeates, D.K., Thorne, J.L. Kishino, H 2003) Time flies, a new molecular time-scale for brachyceran fly evolution without a clock. Systematic Biology, 52, 745 756.
74. Wood, D.M 1981) Axymyiidae. Manual of Nearctic Diptera (ed. by J. F. McAlpine, B. V. Peterson, G. E. Shewell, H. J. Teskey, J. R. Vockeroth and D. M. Wood pp. 223 246. Research Branch Agriculture Canada Monograph 27, Ottawa.
75. Wood, D.M. Borkent, A 1989) Phylogeny and classification of the Nematocera. Manual of Nearctic Diptera (ed. by J. F. McAlpine and D. M. Wood pp. 1333 1370. Research Branch Agriculture Canada Monograph 32, Ottawa.
76. Woodley, N.E 1989) Phylogeny and classification of the "Orthorrhaphous" Brachycera. Manual of Nearctic Diptera (ed. by J. F. McAlpine and D. M. Wood Vol. 3, pp. 1371 1395. Research Branch Agriculture Canada Monograph 32, Ottawa.
77. Woodley, N.E 2005) Dacochile microsoma Poinar & Brown, not a tanyderid but a bruchomyiine psychodid (Diptera: Psychodidae, Tanyderidae). Zootaxa, 1012, 53 60.
78. Yeates, D.K. Wiegmann, B.M 1999) Congruence and controversy: toward a Higher-Level Phylogeny of Diptera. Annual Review of Entomology, 44, 397 428.
79. Yeates, D.K. Wiegmann, B.M 2005) Phylogeny and evolution of Diptera: recent insights and new perspectives. The Evolutionary Biology of Flies (ed. by D. K. Yeates and B. M. Wiegmann pp. 14 44. Columbia University Press, New York.
80. Yeates, D.K., Wiegmann, B.M., Courtney, G.W., Meier, R. Pape, T 2007) Phylogeny and systematics of Diptera: two decades of progress and prospects. Zootaxa, 1668, 565 590.
81. Zwickl, D.J 2006) Genetic algorithm approaches for the phylogenetic analysis of large biological sequence datasets under the maximum likelihood criterion. PhD Dissertation, The University of Texas at Austin, Austin.