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Volumn 14, Issue 1, 2013, Pages

Comparative genomics using teleost fish helps to systematically identify target gene bodies of functionally defined human enhancers

Author keywords

Central nervous system; CNEs; Enhancers; Human genome; Synteny; Teleost fish; Transcriptional factors

Indexed keywords

FREAC PROTEIN; HEPATOCYTE NUCLEAR FACTOR; HEPATOCYTE NUCLEAR FACTOR 3BETA; MYOCYTE ENHANCER FACTOR 2; PROTEIN C FOS; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR SOX17; TRANSCRIPTION FACTOR SOX5; TRANSCRIPTION FACTOR TAL1; TRANSCRIPTION FACTOR TAL1 BETA; UNCLASSIFIED DRUG;

EID: 84874059458     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-14-122     Document Type: Article
Times cited : (15)

References (62)
  • 1
    • 33750352462 scopus 로고    scopus 로고
    • Transcriptional regulatory elements in the human genome
    • 10.1146/annurev.genom.7.080505.115623, 16719718
    • Maston GA, Evans SK, Green MR. Transcriptional regulatory elements in the human genome. Annu Rev Genomics Hum Genet 2006, 7:29-59. 10.1146/annurev.genom.7.080505.115623, 16719718.
    • (2006) Annu Rev Genomics Hum Genet , vol.7 , pp. 29-59
    • Maston, G.A.1    Evans, S.K.2    Green, M.R.3
  • 2
    • 1942439150 scopus 로고    scopus 로고
    • Combinatorial gene control involving E2F and E Box family members
    • 10.1038/sj.emboj.7600134, 381409, 15014447
    • Giangrande PH, Zhu W, Rempel RE, Laakso N, Nevins JR. Combinatorial gene control involving E2F and E Box family members. EMBO J 2004, 23:1336-1347. 10.1038/sj.emboj.7600134, 381409, 15014447.
    • (2004) EMBO J , vol.23 , pp. 1336-1347
    • Giangrande, P.H.1    Zhu, W.2    Rempel, R.E.3    Laakso, N.4    Nevins, J.R.5
  • 3
    • 77951546390 scopus 로고    scopus 로고
    • Human intronic enhancers control distinct sub-domains of Gli3 expression during mouse CNS and limb development
    • 10.1186/1471-213X-10-44, 2875213, 20426846
    • Abbasi AA, Paparidis Z, Malik S, Bangs F, Schmidt A. Human intronic enhancers control distinct sub-domains of Gli3 expression during mouse CNS and limb development. BMC Dev Biol 2010, 10:44. 10.1186/1471-213X-10-44, 2875213, 20426846.
    • (2010) BMC Dev Biol , vol.10 , pp. 44
    • Abbasi, A.A.1    Paparidis, Z.2    Malik, S.3    Bangs, F.4    Schmidt, A.5
  • 4
    • 73949116253 scopus 로고    scopus 로고
    • Transcription factors mediate long-range enhancer-promoter interactions
    • 10.1073/pnas.0902454106, 2779200, 19923429
    • Nolis IK, McKay DJ, Mantouvalou E, Lomvardas S, Merika M. Transcription factors mediate long-range enhancer-promoter interactions. Proc Natl Acad Sci USA 2009, 106:20222-20227. 10.1073/pnas.0902454106, 2779200, 19923429.
    • (2009) Proc Natl Acad Sci USA , vol.106 , pp. 20222-20227
    • Nolis, I.K.1    McKay, D.J.2    Mantouvalou, E.3    Lomvardas, S.4    Merika, M.5
  • 5
    • 84863869789 scopus 로고    scopus 로고
    • Human limb abnormalities caused by disruption of hedgehog signaling
    • 10.1016/j.tig.2012.03.012, 22534646
    • Anderson E, Peluso S, Lettice LA, Hill RE. Human limb abnormalities caused by disruption of hedgehog signaling. Trends Genet 2012, 28:364-373. 10.1016/j.tig.2012.03.012, 22534646.
    • (2012) Trends Genet , vol.28 , pp. 364-373
    • Anderson, E.1    Peluso, S.2    Lettice, L.A.3    Hill, R.E.4
  • 6
    • 0348184969 scopus 로고    scopus 로고
    • Comparative genomic analysis as a tool for biological discovery
    • 1664741, 14678488
    • Nobrega MA, Pennacchio LA. Comparative genomic analysis as a tool for biological discovery. J Physiol 2004, 554:31-39. 1664741, 14678488.
    • (2004) J Physiol , vol.554 , pp. 31-39
    • Nobrega, M.A.1    Pennacchio, L.A.2
  • 7
    • 84874801083 scopus 로고    scopus 로고
    • Capturing the regulatory interactions of eukaryote genomes
    • Epub ahead of print
    • Goode DK, Elgar G. Capturing the regulatory interactions of eukaryote genomes. Brief Funct Genomics 2012, Epub ahead of print.
    • (2012) Brief Funct Genomics
    • Goode, D.K.1    Elgar, G.2
  • 8
    • 0037819447 scopus 로고    scopus 로고
    • Transcription regulation and animal diversity
    • 10.1038/nature01763, 12853946
    • Levine M, Tjian R. Transcription regulation and animal diversity. Nature 2003, 424:147-151. 10.1038/nature01763, 12853946.
    • (2003) Nature , vol.424 , pp. 147-151
    • Levine, M.1    Tjian, R.2
  • 9
    • 79955016324 scopus 로고    scopus 로고
    • Evolution of vertebrate appendicular structures: Insight from genetic and palaeontological data
    • 10.1002/dvdy.22572, 21337665
    • Abbasi AA. Evolution of vertebrate appendicular structures: Insight from genetic and palaeontological data. Dev Dyn 2011, 240:1005-1016. 10.1002/dvdy.22572, 21337665.
    • (2011) Dev Dyn , vol.240 , pp. 1005-1016
    • Abbasi, A.A.1
  • 10
    • 84860144321 scopus 로고    scopus 로고
    • Molecular evolution of HR, a gene that regulates the postnatal cycle of the hair follicle
    • 3216519, 22355551
    • Abbasi AA. Molecular evolution of HR, a gene that regulates the postnatal cycle of the hair follicle. Sci Rep 2011, 1:32. 3216519, 22355551.
    • (2011) Sci Rep , vol.1 , pp. 32
    • Abbasi, A.A.1
  • 11
    • 0032893932 scopus 로고    scopus 로고
    • Preservation of duplicate genes by complementary, degenerative mutations
    • 1460548, 10101175
    • Force A, Lynch M, Pickett FB, Amores A, Yan YL. Preservation of duplicate genes by complementary, degenerative mutations. Genetics 1999, 151:1531-1545. 1460548, 10101175.
    • (1999) Genetics , vol.151 , pp. 1531-1545
    • Force, A.1    Lynch, M.2    Pickett, F.B.3    Amores, A.4    Yan, Y.L.5
  • 12
    • 0037500141 scopus 로고    scopus 로고
    • Evolution by gene duplication: an update
    • Zhang J. Evolution by gene duplication: an update. Trends Ecol Evol 2003, 18:292-298.
    • (2003) Trends Ecol Evol , vol.18 , pp. 292-298
    • Zhang, J.1
  • 13
    • 34748841064 scopus 로고    scopus 로고
    • Human GLI3 intragenic conserved non-coding sequences are tissue-specific enhancers
    • 10.1371/journal.pone.0000366, 1838922, 17426814
    • Abbasi AA, Paparidis Z, Malik S, Goode DK, Callaway H. Human GLI3 intragenic conserved non-coding sequences are tissue-specific enhancers. PLoS One 2007, 2:e366. 10.1371/journal.pone.0000366, 1838922, 17426814.
    • (2007) PLoS One , vol.2
    • Abbasi, A.A.1    Paparidis, Z.2    Malik, S.3    Goode, D.K.4    Callaway, H.5
  • 14
    • 13144295005 scopus 로고    scopus 로고
    • Conserved non-genic sequences - an unexpected feature of mammalian genomes
    • Dermitzakis ET, Reymond A, Antonarakis SE. Conserved non-genic sequences - an unexpected feature of mammalian genomes. Nat Rev Genet 2005, 6:151-157.
    • (2005) Nat Rev Genet , vol.6 , pp. 151-157
    • Dermitzakis, E.T.1    Reymond, A.2    Antonarakis, S.E.3
  • 15
    • 33751316959 scopus 로고    scopus 로고
    • In vivo enhancer analysis of human conserved non-coding sequences
    • 10.1038/nature05295, 17086198
    • Pennacchio LA, Ahituv N, Moses AM, Prabhakar S, Nobrega MA. In vivo enhancer analysis of human conserved non-coding sequences. Nature 2006, 444:499-502. 10.1038/nature05295, 17086198.
    • (2006) Nature , vol.444 , pp. 499-502
    • Pennacchio, L.A.1    Ahituv, N.2    Moses, A.M.3    Prabhakar, S.4    Nobrega, M.A.5
  • 16
    • 1842584947 scopus 로고    scopus 로고
    • Applied bioinformatics for the identification of regulatory elements
    • 10.1038/nrg1315, 15131651
    • Wasserman WW, Sandelin A. Applied bioinformatics for the identification of regulatory elements. Nat Rev Genet 2004, 5:276-287. 10.1038/nrg1315, 15131651.
    • (2004) Nat Rev Genet , vol.5 , pp. 276-287
    • Wasserman, W.W.1    Sandelin, A.2
  • 17
    • 33846112470 scopus 로고    scopus 로고
    • VISTA enhancer browser-a database of tissue-specific human enhancers
    • 10.1093/nar/gkl822, 1716724, 17130149
    • Visel A, Minovitsky S, Dubchak I, Pennacchio LA. VISTA enhancer browser-a database of tissue-specific human enhancers. Nucleic Acids Res 2007, 35:D88-92. 10.1093/nar/gkl822, 1716724, 17130149.
    • (2007) Nucleic Acids Res , vol.35
    • Visel, A.1    Minovitsky, S.2    Dubchak, I.3    Pennacchio, L.A.4
  • 18
    • 38649123306 scopus 로고    scopus 로고
    • Ultraconservation identifies a small subset of extremely constrained developmental enhancers
    • 10.1038/ng.2007.55, 2647775, 18176564
    • Visel A, Prabhakar S, Akiyama JA, Shoukry M, Lewis KD. Ultraconservation identifies a small subset of extremely constrained developmental enhancers. Nat Genet 2008, 40:158-160. 10.1038/ng.2007.55, 2647775, 18176564.
    • (2008) Nat Genet , vol.40 , pp. 158-160
    • Visel, A.1    Prabhakar, S.2    Akiyama, J.A.3    Shoukry, M.4    Lewis, K.D.5
  • 19
    • 0032479079 scopus 로고    scopus 로고
    • Going the distance: a current view of enhancer action
    • Blackwood EM, Kadonaga JT. Going the distance: a current view of enhancer action. Science 1998, 281:60-63.
    • (1998) Science , vol.281 , pp. 60-63
    • Blackwood, E.M.1    Kadonaga, J.T.2
  • 20
    • 29444452159 scopus 로고    scopus 로고
    • Defining a genomic radius for long-range enhancer action: duplicated conserved non-coding elements hold the key
    • 10.1016/j.tig.2005.10.005, 16290136
    • Vavouri T, McEwen GK, Woolfe A, Gilks WR, Elgar G. Defining a genomic radius for long-range enhancer action: duplicated conserved non-coding elements hold the key. Trends Genet 2006, 22:5-10. 10.1016/j.tig.2005.10.005, 16290136.
    • (2006) Trends Genet , vol.22 , pp. 5-10
    • Vavouri, T.1    McEwen, G.K.2    Woolfe, A.3    Gilks, W.R.4    Elgar, G.5
  • 21
    • 34548527597 scopus 로고    scopus 로고
    • Comparative genomics using Fugu reveals insights into regulatory subfunctionalization
    • 10.1186/gb-2007-8-4-r53, 1896008, 17428329
    • Woolfe A, Elgar G. Comparative genomics using Fugu reveals insights into regulatory subfunctionalization. Genome Biol 2007, 8:R53. 10.1186/gb-2007-8-4-r53, 1896008, 17428329.
    • (2007) Genome Biol , vol.8
    • Woolfe, A.1    Elgar, G.2
  • 22
    • 33845528754 scopus 로고    scopus 로고
    • Two novel translocation breakpoints upstream of SOX9 define borders of the proximal and distal breakpoint cluster region in campomelic dysplasia
    • Leipoldt M, Erdel M, Bien-Willner GA, Smyk M, Theurl M. Two novel translocation breakpoints upstream of SOX9 define borders of the proximal and distal breakpoint cluster region in campomelic dysplasia. Clin Genet 2007, 71:67-75.
    • (2007) Clin Genet , vol.71 , pp. 67-75
    • Leipoldt, M.1    Erdel, M.2    Bien-Willner, G.A.3    Smyk, M.4    Theurl, M.5
  • 23
    • 77951874066 scopus 로고    scopus 로고
    • Homotypic clusters of transcription factor binding sites are a key component of human promoters and enhancers
    • 10.1101/gr.104471.109, 2860159, 20363979
    • Gotea V, Visel A, Westlund JM, Nobrega MA, Pennacchio LA. Homotypic clusters of transcription factor binding sites are a key component of human promoters and enhancers. Genome Res 2010, 20:565-577. 10.1101/gr.104471.109, 2860159, 20363979.
    • (2010) Genome Res , vol.20 , pp. 565-577
    • Gotea, V.1    Visel, A.2    Westlund, J.M.3    Nobrega, M.A.4    Pennacchio, L.A.5
  • 24
    • 38749127589 scopus 로고    scopus 로고
    • Predicting expression patterns from regulatory sequence in Drosophila segmentation
    • 10.1038/nature06496, 18172436
    • Segal E, Raveh-Sadka T, Schroeder M, Unnerstall U, Gaul U. Predicting expression patterns from regulatory sequence in Drosophila segmentation. Nature 2008, 451:535-540. 10.1038/nature06496, 18172436.
    • (2008) Nature , vol.451 , pp. 535-540
    • Segal, E.1    Raveh-Sadka, T.2    Schroeder, M.3    Unnerstall, U.4    Gaul, U.5
  • 25
    • 0041324898 scopus 로고    scopus 로고
    • The interplay between the glucocorticoid receptor and nuclear factor-kappaB or activator protein-1: molecular mechanisms for gene repression
    • 10.1210/er.2002-0006, 12920152
    • De Bosscher K, Vanden Berghe W, Haegeman G. The interplay between the glucocorticoid receptor and nuclear factor-kappaB or activator protein-1: molecular mechanisms for gene repression. Endocr Rev 2003, 24:488-522. 10.1210/er.2002-0006, 12920152.
    • (2003) Endocr Rev , vol.24 , pp. 488-522
    • De Bosscher, K.1    Vanden Berghe, W.2    Haegeman, G.3
  • 26
    • 0442276480 scopus 로고    scopus 로고
    • Transcriptional control of B cell development and function
    • 10.1016/j.gene.2003.11.008, 14960357
    • Bartholdy B, Matthias P. Transcriptional control of B cell development and function. Gene 2004, 327:1-23. 10.1016/j.gene.2003.11.008, 14960357.
    • (2004) Gene , vol.327 , pp. 1-23
    • Bartholdy, B.1    Matthias, P.2
  • 27
    • 0033775978 scopus 로고    scopus 로고
    • Human-mouse genome comparisons to locate regulatory sites
    • 10.1038/79965, 11017083
    • Wasserman WW, Palumbo M, Thompson W, Fickett JW, Lawrence CE. Human-mouse genome comparisons to locate regulatory sites. Nat Genet 2000, 26:225-228. 10.1038/79965, 11017083.
    • (2000) Nat Genet , vol.26 , pp. 225-228
    • Wasserman, W.W.1    Palumbo, M.2    Thompson, W.3    Fickett, J.W.4    Lawrence, C.E.5
  • 29
    • 79851473886 scopus 로고    scopus 로고
    • A high-resolution anatomical atlas of the transcriptome in the mouse embryo
    • 10.1371/journal.pbio.1000582, 3022534, 21267068
    • Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol 2011, 9:e1000582. 10.1371/journal.pbio.1000582, 3022534, 21267068.
    • (2011) PLoS Biol , vol.9
    • Diez-Roux, G.1    Banfi, S.2    Sultan, M.3    Geffers, L.4    Anand, S.5
  • 30
    • 33847387473 scopus 로고    scopus 로고
    • Runx1 selectively regulates cell fate specification and axonal projections of dorsal root ganglion neurons
    • 10.1016/j.ydbio.2006.12.007, 17208218
    • Yoshikawa M, Senzaki K, Yokomizo T, Takahashi S, Ozaki S. Runx1 selectively regulates cell fate specification and axonal projections of dorsal root ganglion neurons. Dev Biol 2007, 303:663-674. 10.1016/j.ydbio.2006.12.007, 17208218.
    • (2007) Dev Biol , vol.303 , pp. 663-674
    • Yoshikawa, M.1    Senzaki, K.2    Yokomizo, T.3    Takahashi, S.4    Ozaki, S.5
  • 31
    • 16244381736 scopus 로고    scopus 로고
    • Inactivation of the arylhydrocarbon receptor nuclear translocator (Arnt) suppresses von Hippel-Lindau disease-associated vascular tumors in mice
    • 10.1128/MCB.25.8.3163-3172.2005, 1069599, 15798202
    • Rankin EB, Higgins DF, Walisser JA, Johnson RS, Bradfield CA. Inactivation of the arylhydrocarbon receptor nuclear translocator (Arnt) suppresses von Hippel-Lindau disease-associated vascular tumors in mice. Mol Cell Biol 2005, 25:3163-3172. 10.1128/MCB.25.8.3163-3172.2005, 1069599, 15798202.
    • (2005) Mol Cell Biol , vol.25 , pp. 3163-3172
    • Rankin, E.B.1    Higgins, D.F.2    Walisser, J.A.3    Johnson, R.S.4    Bradfield, C.A.5
  • 32
    • 4444286932 scopus 로고    scopus 로고
    • LE-PAS, a novel Arnt-dependent HLH-PAS protein, is expressed in limbic tissues and transactivates the CNS midline enhancer element
    • 10.1016/j.molbrainres.2004.06.023, 15363889
    • Moser M, Knoth R, Bode C, Patterson C. LE-PAS, a novel Arnt-dependent HLH-PAS protein, is expressed in limbic tissues and transactivates the CNS midline enhancer element. Brain Res Mol Brain Res 2004, 128:141-149. 10.1016/j.molbrainres.2004.06.023, 15363889.
    • (2004) Brain Res Mol Brain Res , vol.128 , pp. 141-149
    • Moser, M.1    Knoth, R.2    Bode, C.3    Patterson, C.4
  • 33
    • 69249217752 scopus 로고    scopus 로고
    • A single exposure to an enriched environment stimulates the activation of discrete neuronal populations in the brain of the fos-tau-lacZ mouse
    • 10.1016/j.nlm.2009.05.004, 19450699
    • Ali AE, Wilson YM, Murphy M. A single exposure to an enriched environment stimulates the activation of discrete neuronal populations in the brain of the fos-tau-lacZ mouse. Neurobiol Learn Mem 2009, 92:381-390. 10.1016/j.nlm.2009.05.004, 19450699.
    • (2009) Neurobiol Learn Mem , vol.92 , pp. 381-390
    • Ali, A.E.1    Wilson, Y.M.2    Murphy, M.3
  • 34
    • 33646123524 scopus 로고    scopus 로고
    • C-fos modulates brain-derived neurotrophic factor mRNA expression in mouse hippocampal CA3 and dentate gyrus neurons
    • 10.1016/j.neulet.2006.02.063, 16530956
    • Dong M, Wu Y, Fan Y, Xu M, Zhang J. c-fos modulates brain-derived neurotrophic factor mRNA expression in mouse hippocampal CA3 and dentate gyrus neurons. Neurosci Lett 2006, 400:177-180. 10.1016/j.neulet.2006.02.063, 16530956.
    • (2006) Neurosci Lett , vol.400 , pp. 177-180
    • Dong, M.1    Wu, Y.2    Fan, Y.3    Xu, M.4    Zhang, J.5
  • 35
    • 0027220683 scopus 로고
    • NF-kappa B-like factors in the murine brain. Developmentally-regulated and tissue-specific expression
    • 10.1016/0169-328X(93)90119-A, 8255175
    • Bakalkin G, Yakovleva T, Terenius L. NF-kappa B-like factors in the murine brain. Developmentally-regulated and tissue-specific expression. Brain Res Mol Brain Res 1993, 20:137-146. 10.1016/0169-328X(93)90119-A, 8255175.
    • (1993) Brain Res Mol Brain Res , vol.20 , pp. 137-146
    • Bakalkin, G.1    Yakovleva, T.2    Terenius, L.3
  • 36
    • 33646939550 scopus 로고    scopus 로고
    • Regulation of nuclear factor kappaB in the hippocampus by group I metabotropic glutamate receptors
    • 10.1523/JNEUROSCI.4527-05.2006, 16672661
    • O'Riordan KJ, Huang IC, Pizzi M, Spano P, Boroni F. Regulation of nuclear factor kappaB in the hippocampus by group I metabotropic glutamate receptors. J Neurosci 2006, 26:4870-4879. 10.1523/JNEUROSCI.4527-05.2006, 16672661.
    • (2006) J Neurosci , vol.26 , pp. 4870-4879
    • O'Riordan, K.J.1    Huang, I.C.2    Pizzi, M.3    Spano, P.4    Boroni, F.5
  • 37
    • 0037407087 scopus 로고    scopus 로고
    • The forkhead box F1 transcription factor is expressed in brain and head mesenchyme during mouse embryonic development
    • 10.1016/S1567-133X(03)00010-3, 12711542
    • Kalinichenko VV, Gusarova GA, Shin B, Costa RH. The forkhead box F1 transcription factor is expressed in brain and head mesenchyme during mouse embryonic development. Gene Expr Patterns 2003, 3:153-158. 10.1016/S1567-133X(03)00010-3, 12711542.
    • (2003) Gene Expr Patterns , vol.3 , pp. 153-158
    • Kalinichenko, V.V.1    Gusarova, G.A.2    Shin, B.3    Costa, R.H.4
  • 38
    • 19944401504 scopus 로고    scopus 로고
    • Mouse brain organization revealed through direct genome-scale TF expression analysis
    • 10.1126/science.1104935, 15618518
    • Gray PA, Fu H, Luo P, Zhao Q, Yu J. Mouse brain organization revealed through direct genome-scale TF expression analysis. Science 2004, 306:2255-2257. 10.1126/science.1104935, 15618518.
    • (2004) Science , vol.306 , pp. 2255-2257
    • Gray, P.A.1    Fu, H.2    Luo, P.3    Zhao, Q.4    Yu, J.5
  • 39
    • 33846252240 scopus 로고    scopus 로고
    • Genome-wide atlas of gene expression in the adult mouse brain
    • 10.1038/nature05453, 17151600
    • Lein ES, Hawrylycz MJ, Ao N, Ayres M, Bensinger A. Genome-wide atlas of gene expression in the adult mouse brain. Nature 2007, 445:168-176. 10.1038/nature05453, 17151600.
    • (2007) Nature , vol.445 , pp. 168-176
    • Lein, E.S.1    Hawrylycz, M.J.2    Ao, N.3    Ayres, M.4    Bensinger, A.5
  • 40
    • 78649523475 scopus 로고    scopus 로고
    • Homologs of genes expressed in caenorhabditis elegans GABAergic neurons are also found in the developing mouse forebrain
    • 10.1186/1749-8104-5-32, 3006369, 21122108
    • Hammock EA, Eagleson KL, Barlow S, Earls LR, Miller DM. Homologs of genes expressed in caenorhabditis elegans GABAergic neurons are also found in the developing mouse forebrain. Neural Dev 2010, 5:32. 10.1186/1749-8104-5-32, 3006369, 21122108.
    • (2010) Neural Dev , vol.5 , pp. 32
    • Hammock, E.A.1    Eagleson, K.L.2    Barlow, S.3    Earls, L.R.4    Miller, D.M.5
  • 41
    • 78751499675 scopus 로고    scopus 로고
    • GABAergic and glutamatergic identities of developing midbrain Pitx2 neurons
    • 10.1002/dvdy.22532, 3079949, 21246650
    • Waite MR, Skidmore JM, Billi AC, Martin JF, Martin DM. GABAergic and glutamatergic identities of developing midbrain Pitx2 neurons. Dev Dyn 2011, 240:333-346. 10.1002/dvdy.22532, 3079949, 21246650.
    • (2011) Dev Dyn , vol.240 , pp. 333-346
    • Waite, M.R.1    Skidmore, J.M.2    Billi, A.C.3    Martin, J.F.4    Martin, D.M.5
  • 42
    • 79960640766 scopus 로고    scopus 로고
    • Specific and integrated roles of Lmx1a, Lmx1b and Phox2a in ventral midbrain development
    • 10.1242/dev.065482, 21752929
    • Deng Q, Andersson E, Hedlund E, Alekseenko Z, Coppola E. Specific and integrated roles of Lmx1a, Lmx1b and Phox2a in ventral midbrain development. Development 2011, 138:3399-3408. 10.1242/dev.065482, 21752929.
    • (2011) Development , vol.138 , pp. 3399-3408
    • Deng, Q.1    Andersson, E.2    Hedlund, E.3    Alekseenko, Z.4    Coppola, E.5
  • 43
    • 0030477812 scopus 로고    scopus 로고
    • The expression of MEF2 genes is implicated in CNS neuronal differentiation
    • 10.1016/S0169-328X(96)00135-0, 9013788
    • Lin X, Shah S, Bulleit RF. The expression of MEF2 genes is implicated in CNS neuronal differentiation. Brain Res Mol Brain Res 1996, 42:307-316. 10.1016/S0169-328X(96)00135-0, 9013788.
    • (1996) Brain Res Mol Brain Res , vol.42 , pp. 307-316
    • Lin, X.1    Shah, S.2    Bulleit, R.F.3
  • 44
    • 0029085629 scopus 로고
    • Expression of mef2 genes in the mouse central nervous system suggests a role in neuronal maturation
    • Lyons GE, Micales BK, Schwarz J, Martin JF, Olson EN. Expression of mef2 genes in the mouse central nervous system suggests a role in neuronal maturation. J Neurosci 1995, 15:5727-5738.
    • (1995) J Neurosci , vol.15 , pp. 5727-5738
    • Lyons, G.E.1    Micales, B.K.2    Schwarz, J.3    Martin, J.F.4    Olson, E.N.5
  • 45
    • 33646558596 scopus 로고    scopus 로고
    • NF-kappaB protects neurons from ischemic injury after middle cerebral artery occlusion in mice
    • 10.1016/j.brainres.2006.02.103, 16630592
    • Duckworth EA, Butler T, Collier L, Collier S, Pennypacker KR. NF-kappaB protects neurons from ischemic injury after middle cerebral artery occlusion in mice. Brain Res 2006, 1088:167-175. 10.1016/j.brainres.2006.02.103, 16630592.
    • (2006) Brain Res , vol.1088 , pp. 167-175
    • Duckworth, E.A.1    Butler, T.2    Collier, L.3    Collier, S.4    Pennypacker, K.R.5
  • 46
    • 20644440407 scopus 로고    scopus 로고
    • NF-kappaB transcription factor is required for inhibitory avoidance long-term memory in mice
    • 10.1111/j.1460-9568.2005.04126.x, 15926932
    • Freudenthal R, Boccia MM, Acosta GB, Blake MG, Merlo E. NF-kappaB transcription factor is required for inhibitory avoidance long-term memory in mice. Eur J Neurosci 2005, 21:2845-2852. 10.1111/j.1460-9568.2005.04126.x, 15926932.
    • (2005) Eur J Neurosci , vol.21 , pp. 2845-2852
    • Freudenthal, R.1    Boccia, M.M.2    Acosta, G.B.3    Blake, M.G.4    Merlo, E.5
  • 47
    • 68349116164 scopus 로고    scopus 로고
    • The N-Myc-DLL3 cascade is suppressed by the ubiquitin ligase Huwe1 to inhibit proliferation and promote neurogenesis in the developing brain
    • 10.1016/j.devcel.2009.07.009, 2769073, 19686682
    • Zhao X, DA D, Lim WK, Brahmachary M, Carro MS. The N-Myc-DLL3 cascade is suppressed by the ubiquitin ligase Huwe1 to inhibit proliferation and promote neurogenesis in the developing brain. Dev Cell 2009, 17:210-221. 10.1016/j.devcel.2009.07.009, 2769073, 19686682.
    • (2009) Dev Cell , vol.17 , pp. 210-221
    • Zhao, X.1    DA, D.2    Lim, W.K.3    Brahmachary, M.4    Carro, M.S.5
  • 48
    • 0344585990 scopus 로고    scopus 로고
    • Regionally restricted expression of the transcription factor c-myc intron 1 binding protein during brain development
    • 10.1002/cne.10958, 14624490
    • Campbell DB, Levitt P. Regionally restricted expression of the transcription factor c-myc intron 1 binding protein during brain development. J Comp Neurol 2003, 467:581-592. 10.1002/cne.10958, 14624490.
    • (2003) J Comp Neurol , vol.467 , pp. 581-592
    • Campbell, D.B.1    Levitt, P.2
  • 49
    • 33750878798 scopus 로고    scopus 로고
    • BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system
    • 10.1371/journal.pbio.0040086, 1413568, 16602821
    • Magdaleno S, Jensen P, Brumwell CL, Seal A, Lehman K. BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system. PLoS Biol 2006, 4:e86. 10.1371/journal.pbio.0040086, 1413568, 16602821.
    • (2006) PLoS Biol , vol.4
    • Magdaleno, S.1    Jensen, P.2    Brumwell, C.L.3    Seal, A.4    Lehman, K.5
  • 50
    • 70349483913 scopus 로고    scopus 로고
    • SOX6 controls dorsal progenitor identity and interneuron diversity during neocortical development
    • 10.1038/nn.2387, 2903203, 19657336
    • Azim E, Jabaudon D, Fame RM, Macklis JD. SOX6 controls dorsal progenitor identity and interneuron diversity during neocortical development. Nat Neurosci 2009, 12:1238-1247. 10.1038/nn.2387, 2903203, 19657336.
    • (2009) Nat Neurosci , vol.12 , pp. 1238-1247
    • Azim, E.1    Jabaudon, D.2    Fame, R.M.3    Macklis, J.D.4
  • 51
    • 68949157053 scopus 로고    scopus 로고
    • The cell-intrinsic requirement of Sox6 for cortical interneuron development
    • 10.1016/j.neuron.2009.08.005, 2773208, 19709629
    • Batista-Brito R, Rossignol E, Hjerling-Leffler J, Denaxa M, Wegner M. The cell-intrinsic requirement of Sox6 for cortical interneuron development. Neuron 2009, 63:466-481. 10.1016/j.neuron.2009.08.005, 2773208, 19709629.
    • (2009) Neuron , vol.63 , pp. 466-481
    • Batista-Brito, R.1    Rossignol, E.2    Hjerling-Leffler, J.3    Denaxa, M.4    Wegner, M.5
  • 52
    • 43149124200 scopus 로고    scopus 로고
    • E protein dosage influences brain development more than family member identity
    • 10.1002/jnr.21615, 18214987
    • Ravanpay AC, Olson JM. E protein dosage influences brain development more than family member identity. J Neurosci Res 2008, 86:1472-1481. 10.1002/jnr.21615, 18214987.
    • (2008) J Neurosci Res , vol.86 , pp. 1472-1481
    • Ravanpay, A.C.1    Olson, J.M.2
  • 53
    • 0037044762 scopus 로고    scopus 로고
    • Cloning and characterization of GRIPE, a novel interacting partner of the transcription factor E12 in developing mouse forebrain
    • 10.1074/jbc.M204858200, 12200424
    • Heng JI, Tan SS. Cloning and characterization of GRIPE, a novel interacting partner of the transcription factor E12 in developing mouse forebrain. J Biol Chem 2002, 277:43152-43159. 10.1074/jbc.M204858200, 12200424.
    • (2002) J Biol Chem , vol.277 , pp. 43152-43159
    • Heng, J.I.1    Tan, S.S.2
  • 54
    • 52949136995 scopus 로고    scopus 로고
    • Interaction of USF1/USF2 and alpha-Pal/Nrf1 to Fmr-1 promoter increases in mouse brain during aging
    • 10.1016/j.bbrc.2008.08.155, 18782566
    • Prasad S, Singh K. Interaction of USF1/USF2 and alpha-Pal/Nrf1 to Fmr-1 promoter increases in mouse brain during aging. Biochem Biophys Res Commun 2008, 376:347-351. 10.1016/j.bbrc.2008.08.155, 18782566.
    • (2008) Biochem Biophys Res Commun , vol.376 , pp. 347-351
    • Prasad, S.1    Singh, K.2
  • 56
    • 2442718832 scopus 로고    scopus 로고
    • The ensembl web site: mechanics of a genome browser
    • 10.1101/gr.1863004, 479125, 15123591
    • Stalker J, Gibbins B, Meidl P, Smith J, Spooner W. The ensembl web site: mechanics of a genome browser. Genome Res 2004, 14:951-955. 10.1101/gr.1863004, 479125, 15123591.
    • (2004) Genome Res , vol.14 , pp. 951-955
    • Stalker, J.1    Gibbins, B.2    Meidl, P.3    Smith, J.4    Spooner, W.5
  • 57
    • 59949096873 scopus 로고    scopus 로고
    • EnsemblCompara GeneTrees: complete, duplication-aware phylogenetic trees in vertebrates
    • 2652215, 19029536
    • Vilella AJ, Severin J, Ureta-Vidal A, Heng L, Durbin R. EnsemblCompara GeneTrees: complete, duplication-aware phylogenetic trees in vertebrates. Genome Res 2009, 19:327-335. 2652215, 19029536.
    • (2009) Genome Res , vol.19 , pp. 327-335
    • Vilella, A.J.1    Severin, J.2    Ureta-Vidal, A.3    Heng, L.4    Durbin, R.5
  • 58
    • 3242891274 scopus 로고    scopus 로고
    • ConSite: web-based prediction of regulatory elements using cross-species comparison
    • 10.1093/nar/gkh372, 441510, 15215389
    • Sandelin A, Wasserman WW, Lenhard B. ConSite: web-based prediction of regulatory elements using cross-species comparison. Nucleic Acids Res 2004, 32:W249-252. 10.1093/nar/gkh372, 441510, 15215389.
    • (2004) Nucleic Acids Res , vol.32
    • Sandelin, A.1    Wasserman, W.W.2    Lenhard, B.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.