Mouse brain organization revealed through direct genome-scale TF expression analysis

Science

Volumn 306, Issue 5705, 2004, Pages 2255-2257

  Gray, Paul A ^a,b,e   Fu, Hui ^a,b   Luo, Ping ^a,b   Zhao, Qing ^b   Yu, Jing ^c   Ferrari, Annette ^b   Tenzen, Toyoaki ^c   Yuk, Dong In ^b   Tsung, Eric F ^d,f   Cai, Zhaohui ^d   Alberta, John A ^b   Cheng, Le Ping ^a,b   Liu, Yang ^a,b   Stenman, Jan M ^c   Valerius, M Todd ^c   Billings, Nathan ^b   Kim, Haesun A ^a,b,g   Greenberg, Michael E ^a,d   McMahon, Andrew P ^c   Rowitch, David H ^b,d   Stiles, Charles D ^a,b   Ma, Qiufu ^a,b   more..

^a HARVARD MEDICAL SCHOOL   (United States)

^b DANA FARBER CANCER INSTITUTE   (United States)

^c HARVARD UNIVERSITY   (United States)

^d BOSTON CHILDREN S HOSPITAL   (United States)

^e SALK INSTITUTE FOR BIOLOGICAL STUDIES   (United States)

^f BOSTON COLLEGE   (United States)

^g RUTGERS UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DATABASE SYSTEMS; GENES; NEUROLOGY;

BRAIN ATLAS DATABASE; MOUSE BRAIN ORGANIZATION; MOUSE GENOME; TRANSCRIPTION FACTORS (TF);

BRAIN;

TRANSCRIPTION FACTOR;

BIOLOGY;

ANIMAL TISSUE; ARTICLE; BRAIN; BRAIN REGION; DATA BASE; GENE EXPRESSION; GENE LOCATION; GENOME; GLIA; IN SITU HYBRIDIZATION; MOUSE; NERVE CELL; NONHUMAN; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN LOCALIZATION;

ANIMALS; ANIMALS, NEWBORN; BRAIN; CLONING, MOLECULAR; CORPUS STRIATUM; DATABASES, FACTUAL; DNA PRIMERS; GENE EXPRESSION PROFILING; GENOME; HYPOTHALAMUS; IN SITU HYBRIDIZATION; MESENCEPHALON; MICE; NEOCORTEX; POLYMERASE CHAIN REACTION; RHOMBENCEPHALON; SPINAL CORD; THALAMUS; TRANSCRIPTION FACTORS;

ANIMALIA; MURINAE;

EID: 19944401504     PISSN: 00368075     EISSN: None     Source Type: Journal    
DOI: 10.1126/science.1104935     Document Type: Article

References (21)

1. R. H. Masland, Curr. Biol. 14, R497 (2004).
2. R. Shirasaki, S. L. Pfaff, Annu. Rev. Neurosci. 25, 251 (2002).
3. E. L. Sonnhammer, S. R. Eddy, E. Birney, A. Bateman, Nucleic Acids Res. 26, 320 (1998).
4. V. Matys et al., Nucleic Acids Res. 31, 374 (2003).
5. D. L. Wheeler et al., Nucleic Acids Res. 32, D35 (2004).
6. P. D. Thomas et al., Genome Res. 13, 2129 (2003).
7. D. Stryke et al., Nucleic Acids Res. 31, 278 (2003).
8. J. Hansen et al., Proc. Natl. Acad. Sci. U.S.A. 100, 9918 (2003).
9. R. H. Waterston et al., Nature 420, 520 (2002).
10. International Human Genome Sequencing Consortium, Nature 431, 931 (2004).
11. N. M. Shah et al., Neuron 43, 313 (2004).
12. The Mahoney Transcription Factor Atlas is available at http://mahoney.chip.org/mahoney/.
13. See the Jackson Laboratory's Gene Expression Database, accession no. J:91257, available at www.informatics.jax.org/.
14. D. D. O'Leary, Y. Nakagawa, Curr. Opin. Neurobiol. 12, 14 (2002).
15. E. R. Kandel, J. H. Schwartz, T. M. Jessell, Principles of Neural Science (McGraw-Hill, New York, 2000).
16. S. Gong et al., Nature 425, 917 (2003).
17. C. S. Lai, S. E. Fisher, J. A. Hurst, F. Vargha-Khadem, A. P. Monaco, Nature 413, 519 (2001).
18. J. L. J. Holder, N. F. Butte, A. R. Zinn, Hum. Mol. Genet. 9, 101 (2000).
19. J. Amiel et al., Nature Genet. 33, 459 (2003).
20. N. Gharani, R. Benayed, V. Mancuso, L. M. Brzustowicz, J. H. Millonig, Mol. Psychiatry 9, 474 (2004).
21. We thank J. Olsen, J. Chan, and P. Santos for their technical assistance and R. DePinho for providing the National Institute on Aging 15K cDNA set. We also thank R. Segal and S. Pfaff for critical reading of this manuscript. The work was supported by the Charles Dana Foundation, the National Institute of Neurological Disorders and Stroke (Q.M., C.D.S., D.H.R., and A.P.M.), the National Institute of Dental and Craniofactial Research (Q.M.), the National Institute of Diabetes and Digestive and Kidney Dieseases (A.P.M.), a Ford Foundation Postdoctoral Fellowship for Minorities (P.A.G.), a Parker B. Francis Fellowship in Pulmonary Medicine (P.A.G.), and the Pew Trust (Q.M.).