메뉴 건너뛰기




Volumn 23, Issue 1, 2013, Pages 125-133

New insights into DNA-binding by type IIA topoisomerases

Author keywords

[No Author keywords available]

Indexed keywords

DNA TOPOISOMERASE (ATP HYDROLYSING); DOXORUBICIN; ETOPOSIDE; ISOLEUCINE; MITOXANTRONE; QUINOLINE DERIVED ANTIINFECTIVE AGENT;

EID: 84873523143     PISSN: 0959440X     EISSN: 1879033X     Source Type: Journal    
DOI: 10.1016/j.sbi.2012.11.011     Document Type: Review
Times cited : (23)

References (53)
  • 1
    • 0036085460 scopus 로고    scopus 로고
    • Cellular roles of DNA topoisomerases: a molecular perspective
    • Wang J.C. Cellular roles of DNA topoisomerases: a molecular perspective. Nat Rev Mol Cell Biol 2002, 3:430-440.
    • (2002) Nat Rev Mol Cell Biol , vol.3 , pp. 430-440
    • Wang, J.C.1
  • 2
    • 50649101663 scopus 로고    scopus 로고
    • DNA topoisomerases: harnessing and constraining energy to govern chromosome topology
    • Schoeffler A.J., Berger J.M. DNA topoisomerases: harnessing and constraining energy to govern chromosome topology. Q Rev Biophys 2008, 41:41-101.
    • (2008) Q Rev Biophys , vol.41 , pp. 41-101
    • Schoeffler, A.J.1    Berger, J.M.2
  • 3
    • 81855198087 scopus 로고    scopus 로고
    • All tangled up: how cells direct, manage and exploit topoisomerase function
    • Vos S.M., Tretter E.M., Schmidt B.H., Berger J.M. All tangled up: how cells direct, manage and exploit topoisomerase function. Nat Rev Mol Cell Biol 2011, 12:827-841.
    • (2011) Nat Rev Mol Cell Biol , vol.12 , pp. 827-841
    • Vos, S.M.1    Tretter, E.M.2    Schmidt, B.H.3    Berger, J.M.4
  • 4
    • 0034923502 scopus 로고    scopus 로고
    • DNA topoisomerases: structure, function, and mechanism
    • Champoux J.J. DNA topoisomerases: structure, function, and mechanism. Annu Rev Biochem 2001, 70:369-413.
    • (2001) Annu Rev Biochem , vol.70 , pp. 369-413
    • Champoux, J.J.1
  • 5
    • 0033514360 scopus 로고    scopus 로고
    • Similarity in the catalysis of DNA breakage and rejoining by type IA and IIA DNA topoisomerases
    • Liu Q., Wang J.C. Similarity in the catalysis of DNA breakage and rejoining by type IA and IIA DNA topoisomerases. Proc Natl Acad Sci USA 1999, 96:881-886.
    • (1999) Proc Natl Acad Sci USA , vol.96 , pp. 881-886
    • Liu, Q.1    Wang, J.C.2
  • 6
    • 0026448670 scopus 로고
    • The capture of a DNA double helix by an ATP-dependent protein clamp: a key step in DNA transport by type II DNA topoisomerases
    • Roca J., Wang J.C. The capture of a DNA double helix by an ATP-dependent protein clamp: a key step in DNA transport by type II DNA topoisomerases. Cell 1992, 71:833-840.
    • (1992) Cell , vol.71 , pp. 833-840
    • Roca, J.1    Wang, J.C.2
  • 8
    • 0029961651 scopus 로고    scopus 로고
    • DNA transport by a type II topoisomerase: direct evidence for a two-gate mechanism
    • Roca J., Berger J.M., Harrison S.C., Wang J.C. DNA transport by a type II topoisomerase: direct evidence for a two-gate mechanism. Proc Natl Acad Sci USA 1996, 93:4057-4062.
    • (1996) Proc Natl Acad Sci USA , vol.93 , pp. 4057-4062
    • Roca, J.1    Berger, J.M.2    Harrison, S.C.3    Wang, J.C.4
  • 9
    • 37549023863 scopus 로고    scopus 로고
    • Structural basis for gate-DNA recognition and bending by type IIA topoisomerases
    • Dong K.C., Berger J.M. Structural basis for gate-DNA recognition and bending by type IIA topoisomerases. Nature 2007, 450:1201-1205.
    • (2007) Nature , vol.450 , pp. 1201-1205
    • Dong, K.C.1    Berger, J.M.2
  • 10
    • 77953229439 scopus 로고    scopus 로고
    • A novel and unified two-metal mechanism for DNA cleavage by type II and IA topoisomerases
    • Schmidt B.H., Burgin A.B., Deweese J.E., Osheroff N., Berger J.M. A novel and unified two-metal mechanism for DNA cleavage by type II and IA topoisomerases. Nature 2010, 465:641-644.
    • (2010) Nature , vol.465 , pp. 641-644
    • Schmidt, B.H.1    Burgin, A.B.2    Deweese, J.E.3    Osheroff, N.4    Berger, J.M.5
  • 14
    • 84869097457 scopus 로고    scopus 로고
    • The structure of DNA-bound human topoisomerase II alpha: conformational mechanisms for coordinating inter-subunit interactions with DNA cleavage
    • Wendorff T.J., Schmidt B.H., Heslop P., Austin C.A., Berger J.M. The structure of DNA-bound human topoisomerase II alpha: conformational mechanisms for coordinating inter-subunit interactions with DNA cleavage. J Mol Biol 2012, 424:109-124.
    • (2012) J Mol Biol , vol.424 , pp. 109-124
    • Wendorff, T.J.1    Schmidt, B.H.2    Heslop, P.3    Austin, C.A.4    Berger, J.M.5
  • 17
  • 19
    • 80052964810 scopus 로고    scopus 로고
    • Structural basis for DNA recognition by FOXO proteins
    • Obsil T., Obsilova V. Structural basis for DNA recognition by FOXO proteins. Biochim Biophys Acta 2011, 1813:1946-1953.
    • (2011) Biochim Biophys Acta , vol.1813 , pp. 1946-1953
    • Obsil, T.1    Obsilova, V.2
  • 21
    • 0032493293 scopus 로고    scopus 로고
    • Structural similarities between topoisomerases that cleave one or both DNA strands
    • Berger J.M., Fass D., Wang J.C., Harrison S.C. Structural similarities between topoisomerases that cleave one or both DNA strands. Proc Natl Acad Sci USA 1998, 95:7876-7881.
    • (1998) Proc Natl Acad Sci USA , vol.95 , pp. 7876-7881
    • Berger, J.M.1    Fass, D.2    Wang, J.C.3    Harrison, S.C.4
  • 22
    • 79955566853 scopus 로고    scopus 로고
    • Crystal structure of a covalent intermediate in DNA cleavage and rejoining by Escherichia coli DNA topoisomerase I
    • Zhang Z., Cheng B., Tse-Dinh Y.C. Crystal structure of a covalent intermediate in DNA cleavage and rejoining by Escherichia coli DNA topoisomerase I. Proc Natl Acad Sci USA 2011, 108:6939-6944.
    • (2011) Proc Natl Acad Sci USA , vol.108 , pp. 6939-6944
    • Zhang, Z.1    Cheng, B.2    Tse-Dinh, Y.C.3
  • 23
    • 0033229826 scopus 로고    scopus 로고
    • Structure and function of an archaeal topoisomerase VI subunit with homology to the meiotic recombination factor Spo11
    • Nichols M.D., DeAngelis K., Keck J.L., Berger J.M. Structure and function of an archaeal topoisomerase VI subunit with homology to the meiotic recombination factor Spo11. EMBO J 1999, 18:6177-6188.
    • (1999) EMBO J , vol.18 , pp. 6177-6188
    • Nichols, M.D.1    DeAngelis, K.2    Keck, J.L.3    Berger, J.M.4
  • 24
    • 0035813210 scopus 로고    scopus 로고
    • DNA topoisomerase VI generates ATP-dependent double-strand breaks with two-nucleotide overhangs
    • Buhler C., Lebbink J.H., Bocs C., Ladenstein R., Forterre P. DNA topoisomerase VI generates ATP-dependent double-strand breaks with two-nucleotide overhangs. J Biol Chem 2001, 276:37215-37222.
    • (2001) J Biol Chem , vol.276 , pp. 37215-37222
    • Buhler, C.1    Lebbink, J.H.2    Bocs, C.3    Ladenstein, R.4    Forterre, P.5
  • 25
  • 26
    • 84863168027 scopus 로고    scopus 로고
    • DNA cleavage and opening reactions of human topoisomerase IIalpha are regulated via Mg2+-mediated dynamic bending of gate-DNA
    • Lee S., Jung S.R., Heo K., Byl J.A., Deweese J.E., Osheroff N., Hohng S. DNA cleavage and opening reactions of human topoisomerase IIalpha are regulated via Mg2+-mediated dynamic bending of gate-DNA. Proc Natl Acad Sci USA 2012, 109:2925-2930.
    • (2012) Proc Natl Acad Sci USA , vol.109 , pp. 2925-2930
    • Lee, S.1    Jung, S.R.2    Heo, K.3    Byl, J.A.4    Deweese, J.E.5    Osheroff, N.6    Hohng, S.7
  • 27
    • 0030046809 scopus 로고    scopus 로고
    • Intercalation, DNA kinking, and the control of transcription
    • Werner M.H., Gronenborn A.M., Clore G.M. Intercalation, DNA kinking, and the control of transcription. Science 1996, 271:778-784.
    • (1996) Science , vol.271 , pp. 778-784
    • Werner, M.H.1    Gronenborn, A.M.2    Clore, G.M.3
  • 28
    • 77951565302 scopus 로고    scopus 로고
    • Structural insights into the interaction of the crenarchaeal chromatin protein Cren7 with DNA
    • Zhang Z., Gong Y., Guo L., Jiang T., Huang L. Structural insights into the interaction of the crenarchaeal chromatin protein Cren7 with DNA. Mol Microbiol 2010, 76:749-759.
    • (2010) Mol Microbiol , vol.76 , pp. 749-759
    • Zhang, Z.1    Gong, Y.2    Guo, L.3    Jiang, T.4    Huang, L.5
  • 29
    • 33846954751 scopus 로고    scopus 로고
    • Shaping the Borrelia burgdorferi genome: crystal structure and binding properties of the DNA-bending protein Hbb
    • Mouw K.W., Rice P.A. Shaping the Borrelia burgdorferi genome: crystal structure and binding properties of the DNA-bending protein Hbb. Mol Microbiol 2007, 63:1319-1330.
    • (2007) Mol Microbiol , vol.63 , pp. 1319-1330
    • Mouw, K.W.1    Rice, P.A.2
  • 30
    • 1342324028 scopus 로고    scopus 로고
    • IHF and HU: flexible architects of bent DNA
    • Swinger K.K., Rice P.A. IHF and HU: flexible architects of bent DNA. Curr Opin Struct Biol 2004, 14:28-35.
    • (2004) Curr Opin Struct Biol , vol.14 , pp. 28-35
    • Swinger, K.K.1    Rice, P.A.2
  • 31
    • 0032947158 scopus 로고    scopus 로고
    • Quaternary changes in topoisomerase II may direct orthogonal movement of two DNA strands
    • Fass D., Bogden C.E., Berger J.M. Quaternary changes in topoisomerase II may direct orthogonal movement of two DNA strands. Nat Struct Biol 1999, 6:322-326.
    • (1999) Nat Struct Biol , vol.6 , pp. 322-326
    • Fass, D.1    Bogden, C.E.2    Berger, J.M.3
  • 32
    • 0032530488 scopus 로고    scopus 로고
    • Toprim - a conserved catalytic domain in type IA and II topoisomerases, DnaG-type primases, OLD family nucleases and RecR proteins
    • Aravind L., Leipe D.D., Koonin E.V. Toprim - a conserved catalytic domain in type IA and II topoisomerases, DnaG-type primases, OLD family nucleases and RecR proteins. Nucleic Acids Res 1998, 26:4205-4213.
    • (1998) Nucleic Acids Res , vol.26 , pp. 4205-4213
    • Aravind, L.1    Leipe, D.D.2    Koonin, E.V.3
  • 33
    • 63349104786 scopus 로고    scopus 로고
    • Effects of magnesium and related divalent metal ions in topoisomerase structure and function
    • Sissi C., Palumbo M. Effects of magnesium and related divalent metal ions in topoisomerase structure and function. Nucleic Acids Res 2009, 37:702-711.
    • (2009) Nucleic Acids Res , vol.37 , pp. 702-711
    • Sissi, C.1    Palumbo, M.2
  • 34
    • 78549235443 scopus 로고    scopus 로고
    • Topoisomerases and site-specific recombinases: similarities in structure and mechanism
    • Yang W. Topoisomerases and site-specific recombinases: similarities in structure and mechanism. Crit Rev Biochem Mol Biol 2010, 45:520-534.
    • (2010) Crit Rev Biochem Mol Biol , vol.45 , pp. 520-534
    • Yang, W.1
  • 35
    • 0028350158 scopus 로고
    • Analysis of yeast DNA topoisomerase II mutants resistant to the antitumor drug amsacrine
    • Wasserman R.A., Wang J.C. Analysis of yeast DNA topoisomerase II mutants resistant to the antitumor drug amsacrine. Cancer Res 1994, 54:1795-1800.
    • (1994) Cancer Res , vol.54 , pp. 1795-1800
    • Wasserman, R.A.1    Wang, J.C.2
  • 36
    • 84865723619 scopus 로고    scopus 로고
    • Binding mechanism of MetalNTP substrates and stringent-response alarmones to bacterial DnaG-type primases
    • Rymer R.U., Solorio F.A., Tehranchi A.K., Chu C., Corn J.E., Keck J.L., Wang J.D., Berger J.M. Binding mechanism of MetalNTP substrates and stringent-response alarmones to bacterial DnaG-type primases. Structure 2012, 20:1478-1489.
    • (2012) Structure , vol.20 , pp. 1478-1489
    • Rymer, R.U.1    Solorio, F.A.2    Tehranchi, A.K.3    Chu, C.4    Corn, J.E.5    Keck, J.L.6    Wang, J.D.7    Berger, J.M.8
  • 37
    • 33646552062 scopus 로고    scopus 로고
    • Role of conserved amino acids in the catalytic activity of Escherichia coli primase
    • Rodina A., Godson G.N. Role of conserved amino acids in the catalytic activity of Escherichia coli primase. J Bacteriol 2006, 188:3614-3621.
    • (2006) J Bacteriol , vol.188 , pp. 3614-3621
    • Rodina, A.1    Godson, G.N.2
  • 38
    • 64649090292 scopus 로고    scopus 로고
    • Targeting DNA topoisomerase II in cancer chemotherapy
    • Nitiss J.L. Targeting DNA topoisomerase II in cancer chemotherapy. Nat Rev Cancer 2009, 9:338-350.
    • (2009) Nat Rev Cancer , vol.9 , pp. 338-350
    • Nitiss, J.L.1
  • 39
    • 63349086953 scopus 로고    scopus 로고
    • The DNA cleavage reaction of topoisomerase II: wolf in sheep's clothing
    • Deweese J.E., Osheroff N. The DNA cleavage reaction of topoisomerase II: wolf in sheep's clothing. Nucleic Acids Res 2009, 37:738-748.
    • (2009) Nucleic Acids Res , vol.37 , pp. 738-748
    • Deweese, J.E.1    Osheroff, N.2
  • 40
    • 84855347756 scopus 로고    scopus 로고
    • Interfacial inhibitors: targeting macromolecular complexes
    • Pommier Y., Marchand C. Interfacial inhibitors: targeting macromolecular complexes. Nat Rev Drug Discov 2012, 11:25-36.
    • (2012) Nat Rev Drug Discov , vol.11 , pp. 25-36
    • Pommier, Y.1    Marchand, C.2
  • 41
    • 0023902435 scopus 로고
    • A consensus sequence for cleavage by vertebrate DNA topoisomerase II
    • Spitzner J.R., Muller M.T. A consensus sequence for cleavage by vertebrate DNA topoisomerase II. Nucleic Acids Res 1988, 16:5533-5556.
    • (1988) Nucleic Acids Res , vol.16 , pp. 5533-5556
    • Spitzner, J.R.1    Muller, M.T.2
  • 42
    • 0027516632 scopus 로고
    • Similar sequence specificity of mitoxantrone and VM-26 stimulation of in vitro DNA cleavage by mammalian DNA topoisomerase II
    • Capranico G., De Isabella P., Tinelli S., Bigioni M., Zunino F. Similar sequence specificity of mitoxantrone and VM-26 stimulation of in vitro DNA cleavage by mammalian DNA topoisomerase II. Biochemistry 1993, 32:3038-3046.
    • (1993) Biochemistry , vol.32 , pp. 3038-3046
    • Capranico, G.1    De Isabella, P.2    Tinelli, S.3    Bigioni, M.4    Zunino, F.5
  • 43
    • 0027470671 scopus 로고
    • Effects of base mutations on topoisomerase II DNA cleavage stimulated by mAMSA in short DNA oligomers
    • Capranico G., Tinelli S., Zunino F., Kohn K.W., Pommier Y. Effects of base mutations on topoisomerase II DNA cleavage stimulated by mAMSA in short DNA oligomers. Biochemistry 1993, 32:145-152.
    • (1993) Biochemistry , vol.32 , pp. 145-152
    • Capranico, G.1    Tinelli, S.2    Zunino, F.3    Kohn, K.W.4    Pommier, Y.5
  • 44
    • 17144379287 scopus 로고    scopus 로고
    • Novel symmetric and asymmetric DNA scission determinants for Streptococcus pneumoniae topoisomerase IV and gyrase are clustered at the DNA breakage site
    • Leo E., Gould K.A., Pan X.S., Capranico G., Sanderson M.R., Palumbo M., Fisher L.M. Novel symmetric and asymmetric DNA scission determinants for Streptococcus pneumoniae topoisomerase IV and gyrase are clustered at the DNA breakage site. J Biol Chem 2005, 280:14252-14263.
    • (2005) J Biol Chem , vol.280 , pp. 14252-14263
    • Leo, E.1    Gould, K.A.2    Pan, X.S.3    Capranico, G.4    Sanderson, M.R.5    Palumbo, M.6    Fisher, L.M.7
  • 46
    • 0029360551 scopus 로고
    • DNA topoisomerase II mutations and resistance to anti-tumor drugs
    • Vassetzky Y.S., Alghisi G.C., Gasser S.M. DNA topoisomerase II mutations and resistance to anti-tumor drugs. Bioessays 1995, 17:767-774.
    • (1995) Bioessays , vol.17 , pp. 767-774
    • Vassetzky, Y.S.1    Alghisi, G.C.2    Gasser, S.M.3
  • 47
    • 0024316466 scopus 로고
    • DNA topoisomerase poisons as antitumor drugs
    • Liu L.F. DNA topoisomerase poisons as antitumor drugs. Annu Rev Biochem 1989, 58:351-375.
    • (1989) Annu Rev Biochem , vol.58 , pp. 351-375
    • Liu, L.F.1
  • 49
    • 80052181150 scopus 로고    scopus 로고
    • DNA-induced narrowing of the gyrase N-gate coordinates T-segment capture and strand passage
    • Gubaev A., Klostermeier D. DNA-induced narrowing of the gyrase N-gate coordinates T-segment capture and strand passage. Proc Natl Acad Sci USA 2011, 108:14085-14090.
    • (2011) Proc Natl Acad Sci USA , vol.108 , pp. 14085-14090
    • Gubaev, A.1    Klostermeier, D.2
  • 50
    • 80052187659 scopus 로고    scopus 로고
    • Direct measurement of DNA bending by type IIA topoisomerases: implications for non-equilibrium topology simplification
    • Hardin A.H., Sarkar S.K., Seol Y., Liou G.F., Osheroff N., Neuman K.C. Direct measurement of DNA bending by type IIA topoisomerases: implications for non-equilibrium topology simplification. Nucleic Acids Res 2011, 39:5729-5743.
    • (2011) Nucleic Acids Res , vol.39 , pp. 5729-5743
    • Hardin, A.H.1    Sarkar, S.K.2    Seol, Y.3    Liou, G.F.4    Osheroff, N.5    Neuman, K.C.6
  • 51
    • 2442611949 scopus 로고    scopus 로고
    • The C-terminal domain of DNA gyrase A adopts a DNA-bending beta-pinwheel fold
    • Corbett K.D., Shultzaberger R.K., Berger J.M. The C-terminal domain of DNA gyrase A adopts a DNA-bending beta-pinwheel fold. Proc Natl Acad Sci USA 2004, 101:7293-7298.
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 7293-7298
    • Corbett, K.D.1    Shultzaberger, R.K.2    Berger, J.M.3
  • 52
    • 0029955899 scopus 로고    scopus 로고
    • Conversion of DNA gyrase into a conventional type II topoisomerase
    • Kampranis S.C., Maxwell A. Conversion of DNA gyrase into a conventional type II topoisomerase. Proc Natl Acad Sci USA 1996, 93:14416-14421.
    • (1996) Proc Natl Acad Sci USA , vol.93 , pp. 14416-14421
    • Kampranis, S.C.1    Maxwell, A.2
  • 53
    • 84869094439 scopus 로고    scopus 로고
    • Structure of a topoisomerase II-DNA-nucleotide complex reveals a new control mechanism for ATPase activity
    • Schmidt B.H., Osheroff N., Berger J.M. Structure of a topoisomerase II-DNA-nucleotide complex reveals a new control mechanism for ATPase activity. Nat Struct Mol Biol 2012, 19:1147-1154.
    • (2012) Nat Struct Mol Biol , vol.19 , pp. 1147-1154
    • Schmidt, B.H.1    Osheroff, N.2    Berger, J.M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.