Interaction of nucleotide excision repair factors XPC-HR23B, XPA, and RPA with damaged DNA

Biochemistry (Moscow)

Volumn 73, Issue 8, 2008, Pages 886-896

  Krasikova, Yu S ^a,b   Rechkunova, N I ^a   Maltseva, E A ^a   Petruseva, I O ^a   Silnikov, V N ^a   Zatsepin, T S ^c   Oretskaya, T S ^c   Scharer, O D ^d   Lavrik, O I ^a,b  

^a INSTITUTE OF CHEMICAL BIOLOGY AND FUNDAMENTAL MEDICINE   (Russian Federation)

^b NOVOSIBIRSK STATE UNIVERSITY   (Russian Federation)

^c MOSCOW STATE UNIVERSITY   (Russian Federation)

^d STONY BROOK UNIVERSITY   (United States)

Author keywords

Complex formation; Nucleotide excision repair factors; Photoaffinity labeling; Photoreactive oligonucleotides

Indexed keywords

BIOCHEMISTRY; OLIGONUCLEOTIDES; PHOTOREACTIVITY; PROTEINS;

COMPLEX FORMATIONS; COOPERATIVE BINDING; NUCLEOTIDE EXCISION REPAIR; PHOTOAFFINITY LABELING; REACTION MIXTURE; REGULATION FACTORS; REPLICATION PROTEIN A; SYNERGISTIC EFFECT;

DNA;

DEOXYURIDINE PHOSPHATE; DNA; DNA BINDING PROTEIN; FLOXURIDINE PHOSPHATE; IODODEOXYURIDYLATE; REPLICATION FACTOR A; RPA1 PROTEIN, HUMAN; XERODERMA PIGMENTOSUM GROUP A PROTEIN; XPA PROTEIN, HUMAN; XPC PROTEIN, HUMAN;

ARTICLE; CHEMICAL STRUCTURE; CHEMISTRY; DNA DAMAGE; DNA REPAIR; GENETICS; HUMAN; LIGHT; MACROMOLECULE; METABOLISM; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; RADIATION EXPOSURE; SEQUENCE ALIGNMENT;

BASE SEQUENCE; DEOXYURACIL NUCLEOTIDES; DNA; DNA DAMAGE; DNA REPAIR; DNA-BINDING PROTEINS; FLUORODEOXYURIDYLATE; HUMANS; LIGHT; MACROMOLECULAR SUBSTANCES; MOLECULAR SEQUENCE DATA; MOLECULAR STRUCTURE; REPLICATION PROTEIN A; SEQUENCE ALIGNMENT; XERODERMA PIGMENTOSUM GROUP A PROTEIN;

EID: 50849099118     PISSN: 00062979     EISSN: 16083040     Source Type: Journal    
DOI: 10.1134/S0006297908080063     Document Type: Article

References (52)

1. Sancar, A. (1996) Ann. Rev. Biochem., 65, 43-81.
2. Wood, R. D. (1997) J. Biol. Chem., 272, 23465-23468.
3. De Laat, W. L., Jaspers, N. G., and Hoeijmakers, J. H. (1999) Genes Dev., 13, 768-785.
4. Friedberg, E. C., Walker, G. C., and Siede, W. (1995) 95th Ann. Meet. of the Amer. Soc. Microbiol., ASM Press, Washington DC, USA.
5. Kraemer, K. H., Lee, M. M., and Scott, J. (1984) Carcinogenesis, 5, 511-514.
6. States, J. C., McDuffie, E. R., Myrand, S. P., McDowell, M., and Cleaver, J. E. (1998) Hum. Mutat., 12, 103-113.
7. Cleaver, J. E., Thompson, L. H. A., Richardson, A. S., and States, J. C. (1999) Hum. Mutat., 14, 9-22.
8. Bohr, V. A., Smith, C. A., Okumoto, D. S., and Hanawalt, P. C. (1985) Cell, 40, 359-369.
9. Gillet, L. C. J., and Scharer, O. D. (2006) Chem. Rev., 106, 253-276.
10. Mellon, I., Spivak, G., and Hanawalt, P. C. (1987) Cell, 51, 241-249.
11. Mellon, I., and Hanawalt, P. C. (1989) Nature, 342, 95-98.
12. Evans, E., Moggs, J. G., Hwang, J. R., Egly, J. M., and Wood, R. D. (1997) EMBO J., 16, 6559-6573.
13. Sugasawa, K., Ng, J. M., Masutani, C., Iwai, S., van der Spek, P. J., Eker, A. P., Hanaoka, F., Bootsma, D., and Hoeijmakers, J. H. (1998) Mol. Cell, 2, 223-232.
14. Wakasugi, W., and Sancar, A. (1999) J. Biol. Chem., 274, 18759-18768.
15. Reardon, J. T., and Sancar, A. (2003) Genes Dev., 17, 2539-2551.
16. Kesseler, K. J., Kaufmann, W. K., Reardon, J. T., Elston, T. C., and Sancar, A. (2007) J. Theor. Biol., 249, 361-375.
17. Dellavecchia, M. J., Croteau, D. L., Skorvaga, M., Dezhurov, S. V., Lavrik, O. I., and van Houten, B. (2004) J. Biol. Chem., 279, 45245-45256.
18. Maltseva, E. A., Rechkunova, N. I., Gillet, L. C., Petruseva, I. O., Scharer, O. D., and Lavrik, O. I. (2007) Biochim. Biophys. Acta, 1770, 781-789.
19. Henricksen, L. A., Umbricht, C. B., and Wold, M. S. (1994) J. Biol. Chem., 269, 11121-11132.
20. Sambrook, J., Fritsch, E. F., and Maniatis, T. (1989) Molecular Cloning: A Laboratory Manual, 2nd Edn., Cold Spring Harbor Laboratory Press, N. Y.
21. Yamshchikov, V. F. (1990) Methods for Molecular Genetics and Gene Engineering (Salganic, R. I., ed.) [in Russian], Nauka, Novosibirsk, pp. 145-154.
22. Laemmli, U. K. (1970) Nature, 227, 680-685.
23. Nakano, T., Katafuchi, A., Shimizu, R., Terato, H., Suzuki, T., Tauchi, H., Makino, K., Skorvaga, M., van Houten, B., and Ide, H. (2005) Nucleic Acids Res., 33, 2181-2191.
24. Meisenheimer, K. M., and Koch, T. H. (1997) Crit. Rev. Biochem. Mol. Biol., 32, 101-140.
25. Burns, J. L., Guzder, S. N., Sung, P., Prakash, S., and Prakash, L. (1996) J. Biol. Chem., 271, 11607-11610.
26. Lao, Y., Gomes, X. V., Ren, Y., Taylor, J. S., and Wold, M. S. (2000) Biochemistry, 39, 850-859.
27. Patrick, S. M., and Turchi, J. J. (1999) J. Biol. Chem., 274, 14972-14978.
28. He, Z., Henricksen, L. A., and Wold, M. S. (1995) Nature, 374, 566-569.
29. Hey, T., Lipps, G., and Krauss, G. (2001) Biochemistry, 40, 2901-2910.
30. Clugston, C. K., McLaughlin, K., Kenny, M. K., and Brown, R. (1992) Cancer Res., 52, 6375-6379.
31. Lao, Y., Lee, C. G., and Wold, M. S. (1999) Biochemistry, 38, 3974-3984.
32. De Laat, W. L., Appeldoorn, E., Sugasawa, K., Weterings, E., Jaspers, N. G., and Hoeijmakers, J. H. (1998) Genes Dev., 12, 2598-2609.
33. Missura, M., Buterin, T., Hindges, R., Hubscher, U., Kasparkova, J., Brabec, V., and Naegeli, H. (2001) EMBO J., 20, 3554-3564.
34. Liu, Y., Yang, Z., Utzat, C. D., Liu, Y., Geacintov, N. E., Basu, A. K., and Zou, Y. (2005) Biochemistry, 385, 519-526.
35. Schweizer, U., Hey, T., Lipps, G., and Krauss, G. (1999) Nucleic Acids Res., 27, 3183-3189.
36. Patrick, S. M., and Turchi, J. J. (2001) J. Biol. Chem., 276, 22630-22637.
37. Jones, C. J., and Wood, R. D. (1993) Biochemistry, 32, 12096-12104.
38. Sugasawa, K., Okamoto, T., Shimizu, Y., Masutani, C., Iwai, S., and Hanaoka, F. (2001) Genes Dev., 15, 507-521.
39. Wang, M., Mahrenholz, A., and Lee, S. (2000) Biochemistry, 39, 6433-6439.
40. Patrick, S. M., and Turchi, J. J. (2002) J. Biol. Chem., 277, 16096-16101.
41. Yang, Z., Liu, Y., Mao, L. Y., Zhang, J. T., and Zou, Y. (2002) Biochemistry, 41, 13012-13020.
42. Matsuda, T., Saijo, M., Kuraoka, I., Kobayashi, T., Nakatsu, Y., et al. (1995) J. Biol. Chem., 270, 4152-4157.
43. Reardon, J. T., and Sancar, A. (2002) Mol. Cell Biol., 22, 5938-5945.
44. Camenish, U., Dip, R., Schumacher, S. B., Schuler, B., and Naegeli, H. (2006) Nat. Struct. Mol. Biol., 13, 278-284.
45. Kolpashchikov, D. M., Khodyreva, S. N., Khlimankov, D. Y., Wold, M. S., Favre, A., and Lavrik, O. I. (2001) Nucleic Acids Res., 29, 373-379.
46. Hermanson-Miller, I. L., and Turchi, J. J. (2002) Biochemistry, 41, 2402-2408.
47. Blackwell, L. J., and Borowiec, J. A. (1994) Mol. Cell Biol., 14, 3993-4001.
48. Bochkarev, A., Pfuetzner, R. A., Edwards, A. M., and Frappier, L. (1997) Nature, 385, 176-181.
49. Bochkareva, E., Belegu, V., Korolev, S., and Bochkarev, A. (2001) EMBO J., 20, 612-618.
50. Buterin, T., Meyer, C., Giese, B., and Naegeli, H. (2005) Chem. Biol., 12, 913-922.
51. Maillard, O., Solyom, S., and Naegeli, H. (2007) PLoS Biol., 5, e79.
52. Min, J.-H., and Pavletich, N. P. (2007) Nature, 449, 570-575.