Nucleosomal structure of undamaged DNA regions suppresses the non-specific DNA binding of the XPC complex

DNA Repair

Volumn 4, Issue 3, 2005, Pages 389-395

  Yasuda, Takeshi ^a,c   Sugasawa, Kaoru ^a,b   Shimizu, Yuichiro ^a,d   Iwai, Shigenori ^d   Shiomi, Tadahiro ^c   Hanaoka, Fumio ^a,b,d  

^a Japan Science and Technology Agency   (Japan)

^b JAPAN SCIENCE AND TECHNOLOGY AGENCY   (Japan)

^c NATIONAL INSTITUTE OF RADIOLOGICAL SCIENCES   (Japan)

^d OSAKA UNIVERSITY   (Japan)

Author keywords

Chromatin; Non specific DNA binding; Nucleosome; Nucleotide excision repair; XPC

Indexed keywords

NAKED DNA; PLASMID DNA; PROTEIN; UNCLASSIFIED DRUG; XERODERMA PIGMENTOSUM GROUP C PROTEIN;

ARTICLE; BINDING SITE; CONTROLLED STUDY; DNA BINDING; DNA DAMAGE; DNA STRUCTURE; EXCISION REPAIR; HUMAN; NUCLEOSOME; PRIORITY JOURNAL; PROTEIN BINDING;

BASE SEQUENCE; CELL EXTRACTS; DNA; DNA DAMAGE; DNA FOOTPRINTING; DNA REPAIR; DNA-BINDING PROTEINS; HUMANS; NUCLEOSOMES; RECOMBINANT PROTEINS;

EID: 12344307150     PISSN: 15687864     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.dnarep.2004.10.008     Document Type: Article

References (25)

1. M. Araki, C. Masutani, M. Takemura, A. Uchida, K. Sugasawa, J. Kondoh, Y. Ohkuma, and F. Hanaoka Centrosome protein centrin 2/caltractin 1 is part of the xeroderma pigmentosum group C complex that initiates global genome nucleotide excision repair J. Biol. Chem. 276 2001 18665 18672
2. J.L. Salisbury, K.M. Suino, R. Busby, and M. Springett Centrin-2 is required for centriole duplication in mammalian cells Curr. Biol. 12 2002 1287 1292
3. W.L. de Laat, N.G.J. Jaspers, and J.H.J. Hoeijmakers Molecular mechanism of nucleotide excision repair Genes Dev. 13 1999 768 785
4. K. Sugasawa, T. Okamoto, Y. Shimizu, C. Masutani, S. Iwai, and F. Hanaoka A multistep recognition mechanism for global genomic nucleotide excision repair Genes Dev. 15 2001 507 521
5. K. Sugasawa, Y. Shimizu, S. Iwai, and F. Hanaoka A molecular mechanism for DNA damage recognition by the xeroderma pigmentosum group C protein complex DNA Repair 1 2002 95 107
6. T.E. Shrader, and D.M. Crothers Artificial nucleosome positioning sequences Proc. Natl. Acad. Sci. U.S.A. 86 1989 7418 7422
7. Y. Tanaka, M. Tawaramoto-Sasanuma, S. Kawaguchi, T. Ohta, K. Yoda, H. Kurumizaka, and S. Yokoyama Expression and purification of recombinant human histones Methods 33 2004 3 11
8. K. Luger, T.J. Rechsteiner, and T.J. Richmond Preparation of nucleosome core particle from recombinant histones Meth. Enzymol. 304 1999 3 19
9. K. Ura, M. Araki, H. Saeki, C. Masutani, T. Ito, S. Iwai, T. Mizukoshi, Y. Kaneda, and F. Hanaoka ATP-dependent chromatin remodeling facilitates nucleotide excision repair of UV-induced DNA lesions in synthetic dinucleosomes EMBO J. 20 2001 2004 2014
10. K. Sugasawa, C. Masutani, A. Uchida, T. Maekawa, P.J. van der Spek, D. Bootsma, J.H. Hoeijmakers, and F. Hanaoka HHR23B, a human Rad23 homolog, stimulates XPC protein in nucleotide excision repair in vitro Mol. Cell. Biol. 16 1996 4852 4861
11. X. Liu, and M.J. Smerdon Nucleotide excision repair of the 5S ribosomal RNA gene assembled into nucleosome J. Biol. Chem. 275 2000 23729 23735
12. M. Araki, C. Masutani, T. Maekawa, Y. Watanabe, A. Yamada, R. Kusumoto, D. Sakai, K. Sugasawa, Y. Ohkuma, and F. Hanaoka Reconstitution of damaged DNA excision reaction from SV40 minichromosomes with purified nucleotide excision repair proteins Mutat. Res. 459 2000 147 160
13. R. Hara, J. Mo, and A. Sancar DNA damage in the nucleosome core is refractory to repair by human excision nuclease Mol. Cell. Biol. 20 2000 9173 9181
14. B.C. Beard, S.H. Wilson, and M.J. Smerdon Suppressed catalytic activity of base excision repair enzymes on rotationally positioned uracil in nucleosomes Proc. Natl. Acad. Sci. U.S.A. 100 2003 7465 7470
15. H. Nilsen, T. Lindahl, and A. Verreault DNA base excision repair of uracil residues in reconstituted nucleosome core particles EMBO J. 21 2002 5943 5952
16. D.L. Mitchell, T.D. Nguyen, and J.E. Cleaver Nonrandom induction of pyrimidine-pyrimidone (6-4) photoproducts in ultraviolet-irradiated human chromatin J. Biol. Chem. 265 1990 5353 5356
17. B. Suter, M. Livingstone-Zatchej, and F. Thoma Chromatin structure modulates DNA repair by photolyase in vivo EMBO J. 16 1997 2150 2160
18. H. Gaillard, D.J. Fitzgerald, C.L. Smith, C.L. Peterson, T.J. Richmond, and F. Thoma Chromatin remodeling activities act on UV-damaged nucleosomes and modulate DNA damage accessibility to photolyase J. Biol. Chem. 278 2003 17655 17663
19. M.J. Smerdon, and M.W. Lieberman Nucleosome rearrangement in human chromatin during UV-induced DNA-repair synthesis Proc. Natl. Acad. Sci. U.S.A. 75 1978 4238 4241
20. R. Hara, and A. Sancar The SWI/SNF chromatin-remodeling factor stimulates repair by human excision nuclease in the mononucleosome core particle Mol. Cell. Biol. 22 2002 6779 6787
21. R. Hara, and A. Sancar Effect of damage type on stimulation of human excision nuclease by SWI/SNF chromatin-remodeling factor Mol. Cell. Biol. 23 2003 4121 4125
22. F. Thoma Light and dark in chromatin repair: repair of UV-induced DNA lesions by photolyase and nucleotide excision repair EMBO J. 18 1999 6585 6598
23. C.M. Green, and G. Almouzni When repair meets chromatin EMBO Rep. 3 2002 28 33
24. M. Brand, J.G. Moggs, M. Oulad-Abdelghani, F. Lejeune, F.J. Dilworth, J. Stevenin, G. Almouzni, and L. Tora UV-damaged DNA-binding protein in the TFTC complex links DNA damage recognition to nucleosome acetylation EMBO J. 20 2001 3187 3196
25. A. Datta, S. Bagchi, A. Nag, P. Shiyanov, G.R. Adami, T. Yoon, and P. Raychaudhuri The p48 subunit of the damaged-DNA binding protein DDB associates with the CBP/p300 family of histone acetyltransferase Mutat. Res. 486 2001 89 97