-
1
-
-
70349333201
-
Nucleosomes are well positioned in exons and carry characteristic histone modifications
-
Andersson R, Enroth S, Rada-Iglesias A, Wadelius C, Komorowski J. 2009. Nucleosomes are well positioned in exons and carry characteristic histone modifications. Genome Res 19: 1732-1741.
-
(2009)
Genome Res
, vol.19
, pp. 1732-1741
-
-
Andersson, R.1
Enroth, S.2
Rada-Iglesias, A.3
Wadelius, C.4
Komorowski, J.5
-
2
-
-
23144448511
-
Discovery of the principal specific transcription factors of Apicomplexa and their implication for the evolution of the AP2-integrase DNA binding domains
-
Balaji S, Babu MM, Iyer LM, Aravind L. 2005. Discovery of the principal specific transcription factors of Apicomplexa and their implication for the evolution of the AP2-integrase DNA binding domains. Nucleic Acids Res 33: 3994-4006.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 3994-4006
-
-
Balaji, S.1
Babu, M.M.2
Iyer, L.M.3
Aravind, L.4
-
3
-
-
8444245244
-
Global nucleosome occupancy in yeast
-
doi: 10.1186/gb-2004-5-9-r62
-
Bernstein BE, Liu CL, Humphrey EL, Perlstein EO, Schreiber SL. 2004. Global nucleosome occupancy in yeast. Genome Biol 5: R62. doi: 10.1186/gb-2004-5-9-r62.
-
(2004)
Genome Biol
, vol.5
-
-
Bernstein, B.E.1
Liu, C.L.2
Humphrey, E.L.3
Perlstein, E.O.4
Schreiber, S.L.5
-
4
-
-
0033527048
-
The complete nucleotide sequence of chromosome 3 of Plasmodium falciparum
-
Bowman S, Lawson D, Basham D, Brown D, Chillingworth T, Churcher CM, Craig A, Davies RM, Devlin K, Feltwell T, et al. 1999. The complete nucleotide sequence of chromosome 3 of Plasmodium falciparum. Nature 400: 532-538.
-
(1999)
Nature
, vol.400
, pp. 532-538
-
-
Bowman, S.1
Lawson, D.2
Basham, D.3
Brown, D.4
Chillingworth, T.5
Churcher, C.M.6
Craig, A.7
Davies, R.M.8
Devlin, K.9
Feltwell, T.10
-
5
-
-
4243071596
-
The transcriptome of the intraerythrocytic developmental cycle of Plasmodium falciparum
-
doi: 10.1371/journal.pbio.0000005
-
Bozdech Z, Llinas M, Pulliam BL, Wong ED, Zhu J, DeRisi JL. 2003. The transcriptome of the intraerythrocytic developmental cycle of Plasmodium falciparum. PLoS Biol 1: e5. doi: 10.1371/journal.pbio.0000005.
-
(2003)
PLoS Biol
, vol.1
-
-
Bozdech, Z.1
Llinas, M.2
Pulliam, B.L.3
Wong, E.D.4
Zhu, J.5
DeRisi, J.L.6
-
6
-
-
0141483283
-
Plasmodium falciparum var genes are regulated by two regions with separate promoters, one upstream of the coding region and a second within the intron
-
Calderwood MS, Gannoun-Zaki L, Wellems TE, Deitsch KW. 2003. Plasmodium falciparum var genes are regulated by two regions with separate promoters, one upstream of the coding region and a second within the intron. J Biol Chem 278: 34125-34132.
-
(2003)
J Biol Chem
, vol.278
, pp. 34125-34132
-
-
Calderwood, M.S.1
Gannoun-Zaki, L.2
Wellems, T.E.3
Deitsch, K.W.4
-
7
-
-
53649104458
-
Comparative genomics of the neglected human malaria parasite Plasmodium vivax
-
Carlton JM, Adams JH, Silva JC, Bidwell SL, Lorenzi H, Caler E, Crabtree J, Angiuoli SV, Merino EF, Amedeo P, et al. 2008a. Comparative genomics of the neglected human malaria parasite Plasmodium vivax. Nature 455: 757-763.
-
(2008)
Nature
, vol.455
, pp. 757-763
-
-
Carlton, J.M.1
Adams, J.H.2
Silva, J.C.3
Bidwell, S.L.4
Lorenzi, H.5
Caler, E.6
Crabtree, J.7
Angiuoli, S.V.8
Merino, E.F.9
Amedeo, P.10
-
9
-
-
0028299732
-
Plasmodium falciparum chromatin: Nucleosomal organisation and histone-like proteins
-
Cary C, Lamont D, Dalton JP, Doerig C. 1994. Plasmodium falciparum chromatin: Nucleosomal organisation and histone-like proteins. Parasitol Res 80: 255-258.
-
(1994)
Parasitol Res
, vol.80
, pp. 255-258
-
-
Cary, C.1
Lamont, D.2
Dalton, J.P.3
Doerig, C.4
-
10
-
-
33846523065
-
Epigenetic memory at malaria virulence genes
-
Chookajorn T, Dzikowski R, Frank M, Li F, Jiwani AZ, Hartl DL, Deitsch KW. 2007. Epigenetic memory at malaria virulence genes. Proc Natl Acad Sci 104: 899-902.
-
(2007)
Proc Natl Acad Sci
, vol.104
, pp. 899-902
-
-
Chookajorn, T.1
Dzikowski, R.2
Frank, M.3
Li, F.4
Jiwani, A.Z.5
Hartl, D.L.6
Deitsch, K.W.7
-
11
-
-
4444339460
-
Comparative genomics of transcriptional control in the human malaria parasite Plasmodium falciparum
-
Coulson RM, Hall N, Ouzounis CA. 2004. Comparative genomics of transcriptional control in the human malaria parasite Plasmodium falciparum. Genome Res 14: 1548-1554.
-
(2004)
Genome Res
, vol.14
, pp. 1548-1554
-
-
Coulson, R.M.1
Hall, N.2
Ouzounis, C.A.3
-
12
-
-
20144378871
-
In vivo transcriptome of Plasmodium falciparum reveals overexpression of transcripts that encode surface proteins
-
Daily JP, Le Roch KG, Sarr O, Ndiaye D, Lukens A, Zhou Y, Ndir O, Mboup S, Sultan A, Winzeler EA, et al. 2005. In vivo transcriptome of Plasmodium falciparum reveals overexpression of transcripts that encode surface proteins. J Infect Dis 191: 1196-1203.
-
(2005)
J Infect Dis
, vol.191
, pp. 1196-1203
-
-
Daily, J.P.1
Le Roch, K.G.2
Sarr, O.3
Ndiaye, D.4
Lukens, A.5
Zhou, Y.6
Ndir, O.7
Mboup, S.8
Sultan, A.9
Winzeler, E.A.10
-
13
-
-
0035974802
-
Malaria. Cooperative silencing elements in var genes
-
Deitsch KW, Calderwood MS, Wellems TE. 2001. Malaria. Cooperative silencing elements in var genes. Nature 412: 875-876.
-
(2001)
Nature
, vol.412
, pp. 875-876
-
-
Deitsch, K.W.1
Calderwood, M.S.2
Wellems, T.E.3
-
14
-
-
46149107652
-
Specific DNA-binding by apicomplexan AP2 transcription factors
-
De Silva EK, Gehrke AR, Olszewski K, Leon I, Chahal JS, Bulyk ML, Llinas M. 2008. Specific DNA-binding by apicomplexan AP2 transcription factors. Proc Natl Acad Sci 105: 8393-8398.
-
(2008)
Proc Natl Acad Sci
, vol.105
, pp. 8393-8398
-
-
De Silva, E.K.1
Gehrke, A.R.2
Olszewski, K.3
Leon, I.4
Chahal, J.S.5
Bulyk, M.L.6
Llinas, M.7
-
15
-
-
20144389848
-
Heterochromatin silencing and locus repositioning linked to regulation of virulence genes in Plasmodium falciparum
-
Duraisingh MT, Voss TS, Marty AJ, Duffy MF, Good RT, Thompson JK, Freitas-Junior LH, Scherf A, Crabb BS, Cowman AF. 2005. Heterochromatin silencing and locus repositioning linked to regulation of virulence genes in Plasmodium falciparum. Cell 121: 13-24.
-
(2005)
Cell
, vol.121
, pp. 13-24
-
-
Duraisingh, M.T.1
Voss, T.S.2
Marty, A.J.3
Duffy, M.F.4
Good, R.T.5
Thompson, J.K.6
Freitas-Junior, L.H.7
Scherf, A.8
Crabb, B.S.9
Cowman, A.F.10
-
16
-
-
34848872590
-
Mechanisms underlying mutually exclusive expression of virulence genes by malaria parasites
-
Dzikowski R, Li F, Amulic B, Eisberg A, Frank M, Patel S, Wellems TE, Deitsch KW. 2007. Mechanisms underlying mutually exclusive expression of virulence genes by malaria parasites. EMBO Rep 8: 959-965.
-
(2007)
EMBO Rep
, vol.8
, pp. 959-965
-
-
Dzikowski, R.1
Li, F.2
Amulic, B.3
Eisberg, A.4
Frank, M.5
Patel, S.6
Wellems, T.E.7
Deitsch, K.W.8
-
17
-
-
58149089272
-
Chromatin associated sense and antisense noncoding RNAs are transcribed from the var gene family of virulence genes of the malaria parasite Plasmodium falciparum
-
Epp C, Li F, Howitt CA, Chookajorn T, Deitsch KW. 2009. Chromatin associated sense and antisense noncoding RNAs are transcribed from the var gene family of virulence genes of the malaria parasite Plasmodium falciparum. RNA 15: 116-127.
-
(2009)
RNA
, vol.15
, pp. 116-127
-
-
Epp, C.1
Li, F.2
Howitt, C.A.3
Chookajorn, T.4
Deitsch, K.W.5
-
18
-
-
57149119464
-
-
Field Y, Kaplan N, Fondufe-Mittendorf Y, Moore IK, Sharon E, Lubling Y, Widom J, Segal E. 2008. Distinct modes of regulation by chromatin encoded through nucleosome positioning signals. PLoS Comput Biol 4: e1000216. doi: 10.1371/journal.pcbi.1000216.
-
Field Y, Kaplan N, Fondufe-Mittendorf Y, Moore IK, Sharon E, Lubling Y, Widom J, Segal E. 2008. Distinct modes of regulation by chromatin encoded through nucleosome positioning signals. PLoS Comput Biol 4: e1000216. doi: 10.1371/journal.pcbi.1000216.
-
-
-
-
19
-
-
57149109574
-
-
Ganesan K, Ponmee N, Jiang L, Fowble JW, White J, Kamchonwongpaisan S, Yuthavong Y, Wilairat P, Rathod PK. 2008. A genetically hard-wired metabolic transcriptome in Plasmodium falciparum fails to mount protective responses to lethal antifolates. PLoS Pathog 4: e1000214. doi: 10.1371/journal.ppat.1000214.
-
Ganesan K, Ponmee N, Jiang L, Fowble JW, White J, Kamchonwongpaisan S, Yuthavong Y, Wilairat P, Rathod PK. 2008. A genetically hard-wired metabolic transcriptome in Plasmodium falciparum fails to mount protective responses to lethal antifolates. PLoS Pathog 4: e1000214. doi: 10.1371/journal.ppat.1000214.
-
-
-
-
20
-
-
0037015614
-
Genome sequence of the human malaria parasite Plasmodium falciparum
-
Gardner MJ, Hall N, Fung E, White O, Berriman M, Hyman RW, Carlton JM, Pain A, Nelson KE, Bowman S, et al. 2002. Genome sequence of the human malaria parasite Plasmodium falciparum. Nature 419: 498-511.
-
(2002)
Nature
, vol.419
, pp. 498-511
-
-
Gardner, M.J.1
Hall, N.2
Fung, E.3
White, O.4
Berriman, M.5
Hyman, R.W.6
Carlton, J.M.7
Pain, A.8
Nelson, K.E.9
Bowman, S.10
-
21
-
-
67649524640
-
Isolation of active regulatory elements from eukaryotic chromatin using FAIRE (formaldehyde assisted isolation of regulatory elements)
-
Giresi PG, Lieb JD. 2009. Isolation of active regulatory elements from eukaryotic chromatin using FAIRE (formaldehyde assisted isolation of regulatory elements). Methods 48: 233-239.
-
(2009)
Methods
, vol.48
, pp. 233-239
-
-
Giresi, P.G.1
Lieb, J.D.2
-
22
-
-
34250369627
-
FAIRE (formaldehyde-assisted isolation of regulatory elements) isolates active regulatory elements from human chromatin
-
Giresi PG, Kim J, McDaniell RM, Iyer VR, Lieb JD. 2007. FAIRE (formaldehyde-assisted isolation of regulatory elements) isolates active regulatory elements from human chromatin. Genome Res 17: 877-885.
-
(2007)
Genome Res
, vol.17
, pp. 877-885
-
-
Giresi, P.G.1
Kim, J.2
McDaniell, R.M.3
Iyer, V.R.4
Lieb, J.D.5
-
23
-
-
33845987535
-
Fatty acid biosynthesis as a drug target in apicomplexan parasites
-
Goodman CD, McFadden GI. 2007. Fatty acid biosynthesis as a drug target in apicomplexan parasites. Curr Drug Targets 8: 15-30.
-
(2007)
Curr Drug Targets
, vol.8
, pp. 15-30
-
-
Goodman, C.D.1
McFadden, G.I.2
-
24
-
-
57049103382
-
Plasmodium falciparum: Preinitiation complex occupancy of active and inactive promoters during erythrocytic stage
-
Gopalakrishnan AM, Nyindodo LA, Ross Fergus M, Lopez-Estrano C. 2009. Plasmodium falciparum: Preinitiation complex occupancy of active and inactive promoters during erythrocytic stage. Exp Parasitol 121: 46-54.
-
(2009)
Exp Parasitol
, vol.121
, pp. 46-54
-
-
Gopalakrishnan, A.M.1
Nyindodo, L.A.2
Ross Fergus, M.3
Lopez-Estrano, C.4
-
25
-
-
50949096918
-
-
Gupta S, Dennis J, Thurman RE, Kingston R, Stamatoyannopoulos JA, Noble WS. 2008. Predicting human nucleosome occupancy from primary sequence. PLoS Comput Biol 4: e1000134. doi: 10.1371/journal.pcbi.1000134.
-
Gupta S, Dennis J, Thurman RE, Kingston R, Stamatoyannopoulos JA, Noble WS. 2008. Predicting human nucleosome occupancy from primary sequence. PLoS Comput Biol 4: e1000134. doi: 10.1371/journal.pcbi.1000134.
-
-
-
-
26
-
-
33749406106
-
Cell cycle-specified fluctuation of nucleosome occupancy at gene promoters
-
doi: 10.1371/journal.pgen.0020158
-
Hogan GJ, Lee CK, Lieb JD. 2006. Cell cycle-specified fluctuation of nucleosome occupancy at gene promoters. PLoS Genet 2: e158. doi: 10.1371/journal.pgen.0020158.
-
(2006)
PLoS Genet
, vol.2
-
-
Hogan, G.J.1
Lee, C.K.2
Lieb, J.D.3
-
27
-
-
14244266720
-
Histone H2A ubiquitination does not preclude histone H1 binding, but it facilitates its association with the nucleosome
-
Jason LJ, Finn RM, Lindsey G, Ausio J. 2005. Histone H2A ubiquitination does not preclude histone H1 binding, but it facilitates its association with the nucleosome. J Biol Chem 280: 4975-4982.
-
(2005)
J Biol Chem
, vol.280
, pp. 4975-4982
-
-
Jason, L.J.1
Finn, R.M.2
Lindsey, G.3
Ausio, J.4
-
28
-
-
62649085538
-
The DNA-encoded nucleosome organization of a eukaryotic genome
-
Kaplan N, Moore IK, Fondufe-Mittendorf Y, Gossett AJ, Tillo D, Field Y, LeProust EM, Hughes TR, Lieb JD, Widom J, et al. 2009. The DNA-encoded nucleosome organization of a eukaryotic genome. Nature 458: 362-366.
-
(2009)
Nature
, vol.458
, pp. 362-366
-
-
Kaplan, N.1
Moore, I.K.2
Fondufe-Mittendorf, Y.3
Gossett, A.J.4
Tillo, D.5
Field, Y.6
LeProust, E.M.7
Hughes, T.R.8
Lieb, J.D.9
Widom, J.10
-
29
-
-
33846025466
-
Right-handed DNA supercoiling by an octameric form of histone-like protein HU: Modulation of cellular transcription
-
Kar S, Choi EJ, Guo F, Dimitriadis EK, Kotova SL, Adhya S. 2006. Right-handed DNA supercoiling by an octameric form of histone-like protein HU: Modulation of cellular transcription. J Biol Chem 281: 40144-40153.
-
(2006)
J Biol Chem
, vol.281
, pp. 40144-40153
-
-
Kar, S.1
Choi, E.J.2
Guo, F.3
Dimitriadis, E.K.4
Kotova, S.L.5
Adhya, S.6
-
30
-
-
33646263371
-
Evidence on the chromosomal location of centromeric DNA in Plasmodium falciparum from etoposide-mediated topoisomerase-II cleavage
-
Kelly JM, McRobert L, Baker DA. 2006. Evidence on the chromosomal location of centromeric DNA in Plasmodium falciparum from etoposide-mediated topoisomerase-II cleavage. Proc Natl Acad Sci 103: 6706-6711.
-
(2006)
Proc Natl Acad Sci
, vol.103
, pp. 6706-6711
-
-
Kelly, J.M.1
McRobert, L.2
Baker, D.A.3
-
31
-
-
27644484749
-
A protein interaction network of the malaria parasite Plasmodium falciparum
-
LaCount DJ, Vignali M, Chettier R, Phansalkar A, Bell R, Hesselberth JR, Schoenfeld LW, Ota I, Sahasrabudhe S, Kurschner C, et al. 2005. A protein interaction network of the malaria parasite Plasmodium falciparum. Nature 438: 103-107.
-
(2005)
Nature
, vol.438
, pp. 103-107
-
-
LaCount, D.J.1
Vignali, M.2
Chettier, R.3
Phansalkar, A.4
Bell, R.5
Hesselberth, J.R.6
Schoenfeld, L.W.7
Ota, I.8
Sahasrabudhe, S.9
Kurschner, C.10
-
32
-
-
0018704491
-
Synchronization of Plasmodium falciparum erythrocytic stages in culture
-
Lambros C, Vanderberg JP. 1979. Synchronization of Plasmodium falciparum erythrocytic stages in culture. J Parasitol 65: 418-420.
-
(1979)
J Parasitol
, vol.65
, pp. 418-420
-
-
Lambros, C.1
Vanderberg, J.P.2
-
33
-
-
0141633042
-
Discovery of gene function by expression profiling of the malaria parasite life cycle
-
Le Roch KG, Zhou Y, Blair PL, Grainger M, Moch JK, Haynes JD, De La Vega P, Holder AA, Batalov S, Carucci DJ, et al. 2003. Discovery of gene function by expression profiling of the malaria parasite life cycle. Science 301: 1503-1508.
-
(2003)
Science
, vol.301
, pp. 1503-1508
-
-
Le Roch, K.G.1
Zhou, Y.2
Blair, P.L.3
Grainger, M.4
Moch, J.K.5
Haynes, J.D.6
De La Vega, P.7
Holder, A.A.8
Batalov, S.9
Carucci, D.J.10
-
34
-
-
8744234024
-
Global analysis of transcript and protein levels across the Plasmodium falciparum life cycle
-
Le Roch KG, Johnson JR, Florens L, Zhou Y, Santrosyan A, Grainger M, Yan SF, Williamson KC, Holder AA, Carucci DJ, et al. 2004. Global analysis of transcript and protein levels across the Plasmodium falciparum life cycle. Genome Res 14: 2308-2318.
-
(2004)
Genome Res
, vol.14
, pp. 2308-2318
-
-
Le Roch, K.G.1
Johnson, J.R.2
Florens, L.3
Zhou, Y.4
Santrosyan, A.5
Grainger, M.6
Yan, S.F.7
Williamson, K.C.8
Holder, A.A.9
Carucci, D.J.10
-
35
-
-
57449114130
-
A systematic approach to understand the mechanism of action of the bisthiazolium compound T4 on the human malaria parasite, Plasmodium falciparum
-
doi: 10.1186/1471-2164-9-513
-
Le Roch KG, Johnson JR, Ahiboh H, Chung DW, Prudhomme J, Plouffe D, Henson K, Zhou Y, Witola W, Yates JR, et al. 2008. A systematic approach to understand the mechanism of action of the bisthiazolium compound T4 on the human malaria parasite, Plasmodium falciparum. BMC Genomics 9: 513. doi: 10.1186/1471-2164-9-513.
-
(2008)
BMC Genomics
, vol.9
, pp. 513
-
-
Le Roch, K.G.1
Johnson, J.R.2
Ahiboh, H.3
Chung, D.W.4
Prudhomme, J.5
Plouffe, D.6
Henson, K.7
Zhou, Y.8
Witola, W.9
Yates, J.R.10
-
36
-
-
34748826166
-
A high-resolution atlas of nucleosome occupancy in yeast
-
Lee W, Tillo D, Bray N, Morse RH, Davis RW, Hughes TR, Nislow C. 2007. A high-resolution atlas of nucleosome occupancy in yeast. Nat Genet 39: 1235-1244.
-
(2007)
Nat Genet
, vol.39
, pp. 1235-1244
-
-
Lee, W.1
Tillo, D.2
Bray, N.3
Morse, R.H.4
Davis, R.W.5
Hughes, T.R.6
Nislow, C.7
-
37
-
-
33644854445
-
Comparative whole genome transcriptome analysis of three Plasmodium falciparum strains
-
Llinas M, Bozdech Z, Wong ED, Adai AT, DeRisi JL. 2006. Comparative whole genome transcriptome analysis of three Plasmodium falciparum strains. Nucleic Acids Res 34: 1166-1173.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 1166-1173
-
-
Llinas, M.1
Bozdech, Z.2
Wong, E.D.3
Adai, A.T.4
DeRisi, J.L.5
-
38
-
-
36549069632
-
59 Flanking region of var genes nucleate histone modification patterns linked to phenotypic inheritance of virulence traits in malaria parasites
-
Lopez-Rubio JJ, Gontijo AM, Nunes MC, Issar N, Hernandez Rivas R, Scherf A. 2007. 59 Flanking region of var genes nucleate histone modification patterns linked to phenotypic inheritance of virulence traits in malaria parasites. Mol Microbiol 66: 1296-1305.
-
(2007)
Mol Microbiol
, vol.66
, pp. 1296-1305
-
-
Lopez-Rubio, J.J.1
Gontijo, A.M.2
Nunes, M.C.3
Issar, N.4
Hernandez Rivas, R.5
Scherf, A.6
-
39
-
-
46349097649
-
DNA physical properties determine nucleosome occupancy from yeast to fly
-
Miele V, Vaillant C, d'Aubenton-Carafa Y, Thermes C, Grange T. 2008. DNA physical properties determine nucleosome occupancy from yeast to fly. Nucleic Acids Res 36: 3746-3756.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 3746-3756
-
-
Miele, V.1
Vaillant, C.2
d'Aubenton-Carafa, Y.3
Thermes, C.4
Grange, T.5
-
40
-
-
0038652118
-
Genomewide demarcation of RNA polymerase II transcription units revealed by physical fractionation of chromatin
-
Nagy PL, Cleary ML, Brown PO, Lieb JD. 2003. Genomewide demarcation of RNA polymerase II transcription units revealed by physical fractionation of chromatin. Proc Natl Acad Sci 100: 6364-6369.
-
(2003)
Proc Natl Acad Sci
, vol.100
, pp. 6364-6369
-
-
Nagy, P.L.1
Cleary, M.L.2
Brown, P.O.3
Lieb, J.D.4
-
41
-
-
63049136021
-
PfEMP1: An antigen that plays a key role in the pathogenicity and immune evasion of the malaria parasite Plasmodium falciparum
-
Pasternak ND, Dzikowski R. 2009. PfEMP1: An antigen that plays a key role in the pathogenicity and immune evasion of the malaria parasite Plasmodium falciparum. Int J Biochem Cell Biol 41: 1463-1466.
-
(2009)
Int J Biochem Cell Biol
, vol.41
, pp. 1463-1466
-
-
Pasternak, N.D.1
Dzikowski, R.2
-
42
-
-
22544436998
-
The epigenetic control of antigenic variation in Plasmodium falciparum
-
Ralph SA, Scherf A. 2005. The epigenetic control of antigenic variation in Plasmodium falciparum. Curr Opin Microbiol 8: 434-440.
-
(2005)
Curr Opin Microbiol
, vol.8
, pp. 434-440
-
-
Ralph, S.A.1
Scherf, A.2
-
43
-
-
50849097018
-
DNA organization by the apicoplast-targeted bacterial histone-like protein of Plasmodium falciparum
-
Ram EV, Naik R, Ganguli M, Habib S. 2008. DNA organization by the apicoplast-targeted bacterial histone-like protein of Plasmodium falciparum. Nucleic Acids Res 36: 5061-5073.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 5061-5073
-
-
Ram, E.V.1
Naik, R.2
Ganguli, M.3
Habib, S.4
-
44
-
-
67649849939
-
Dynamic histone H3 epigenome marking during the intraerythrocytic cycle of Plasmodium falciparum
-
Salcedo-Amaya AM, van Driel MA, Alako BT, Trelle MB, van den Elzen AM, Cohen AM, Janssen-Megens EM, van de Vegte-Bolmer M, Selzer RR, Iniguez AL, et al. 2009. Dynamic histone H3 epigenome marking during the intraerythrocytic cycle of Plasmodium falciparum. Proc Natl Acad Sci 106: 9655-9660.
-
(2009)
Proc Natl Acad Sci
, vol.106
, pp. 9655-9660
-
-
Salcedo-Amaya, A.M.1
van Driel, M.A.2
Alako, B.T.3
Trelle, M.B.4
van den Elzen, A.M.5
Cohen, A.M.6
Janssen-Megens, E.M.7
van de Vegte-Bolmer, M.8
Selzer, R.R.9
Iniguez, A.L.10
-
45
-
-
69949132191
-
Chromatin organization marks exonintron structure
-
Schwartz S, Meshorer E, Ast G. 2009. Chromatin organization marks exonintron structure. Nat Struct Mol Biol 16: 990-995.
-
(2009)
Nat Struct Mol Biol
, vol.16
, pp. 990-995
-
-
Schwartz, S.1
Meshorer, E.2
Ast, G.3
-
46
-
-
60349115060
-
Poly(dA:dT) tracts: Major determinants of nucleosome organization
-
Segal E, Widom J. 2009a. Poly(dA:dT) tracts: Major determinants of nucleosome organization. Curr Opin Struct Biol 19: 65-71.
-
(2009)
Curr Opin Struct Biol
, vol.19
, pp. 65-71
-
-
Segal, E.1
Widom, J.2
-
47
-
-
68349125112
-
What controls nucleosome positions?
-
Segal E, Widom J. 2009b. What controls nucleosome positions? Trends Genet 25: 335-343.
-
(2009)
Trends Genet
, vol.25
, pp. 335-343
-
-
Segal, E.1
Widom, J.2
-
48
-
-
38349145774
-
Whole-genome analysis of mRNA decay in Plasmodium falciparum reveals a global lengthening of mRNA half-life during the intra-erythrocytic development cycle
-
doi: 10.1186/gb-2007-8-7-r134
-
Shock JL, Fischer KF, DeRisi JL. 2007. Whole-genome analysis of mRNA decay in Plasmodium falciparum reveals a global lengthening of mRNA half-life during the intra-erythrocytic development cycle. Genome Biol 8: R134. doi: 10.1186/gb-2007-8-7-r134.
-
(2007)
Genome Biol
, vol.8
-
-
Shock, J.L.1
Fischer, K.F.2
DeRisi, J.L.3
-
49
-
-
61949478255
-
Patterns of gene-specific and total transcriptional activity during the Plasmodium falciparum intraerythrocytic developmental cycle
-
Sims JS, Militello KT, Sims PA, Patel VP, Kasper JM, Wirth DF. 2009. Patterns of gene-specific and total transcriptional activity during the Plasmodium falciparum intraerythrocytic developmental cycle. Eukaryot Cell 8: 327-338.
-
(2009)
Eukaryot Cell
, vol.8
, pp. 327-338
-
-
Sims, J.S.1
Militello, K.T.2
Sims, P.A.3
Patel, V.P.4
Kasper, J.M.5
Wirth, D.F.6
-
50
-
-
15044338866
-
The global distribution of clinical episodes of Plasmodium falciparum malaria
-
Snow RW, Guerra CA, Noor AM, Myint HY, Hay SI. 2005. The global distribution of clinical episodes of Plasmodium falciparum malaria. Nature 434: 214-217.
-
(2005)
Nature
, vol.434
, pp. 214-217
-
-
Snow, R.W.1
Guerra, C.A.2
Noor, A.M.3
Myint, H.Y.4
Hay, S.I.5
-
51
-
-
69949124307
-
Nucleosome positioning as a determinant of exon recognition
-
Tilgner H, Nikolaou C, Althammer S, Sammeth M, Beato M, Valcarcel J, Guigo R. 2009. Nucleosome positioning as a determinant of exon recognition. Nat Struct Mol Biol 16: 996-1001.
-
(2009)
Nat Struct Mol Biol
, vol.16
, pp. 996-1001
-
-
Tilgner, H.1
Nikolaou, C.2
Althammer, S.3
Sammeth, M.4
Beato, M.5
Valcarcel, J.6
Guigo, R.7
-
52
-
-
45449093785
-
nuScore: A web-interface for nucleosome positioning predictions
-
Tolstorukov MY, Choudhary V, Olson WK, Zhurkin VB, Park PJ. 2008. nuScore: A web-interface for nucleosome positioning predictions. Bioinformatics 24: 1456-1458.
-
(2008)
Bioinformatics
, vol.24
, pp. 1456-1458
-
-
Tolstorukov, M.Y.1
Choudhary, V.2
Olson, W.K.3
Zhurkin, V.B.4
Park, P.J.5
-
53
-
-
43749086962
-
Evidence-based annotation of the malaria parasite's genome using comparative expression profiling
-
doi: 10.1371/journal.pone.0001570
-
Zhou Y, Ramachandran V, Kumar KA, Westenberger S, Refour P, Zhou B, Li F, Young JA, Chen K, Plouffe D, et al. 2008. Evidence-based annotation of the malaria parasite's genome using comparative expression profiling. PLoS One 3: e1570. doi: 10.1371/journal.pone.0001570.
-
(2008)
PLoS One
, vol.3
-
-
Zhou, Y.1
Ramachandran, V.2
Kumar, K.A.3
Westenberger, S.4
Refour, P.5
Zhou, B.6
Li, F.7
Young, J.A.8
Chen, K.9
Plouffe, D.10
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