-
1
-
-
59049106948
-
Predicting cellular growth from gene expression signatures
-
Airoldi EM, Huttenhower C, Gresham D, Lu C, Caudy AA, Dunham MJ, Broach JR, Botstein D, Troyanskaya OG (2009). Predicting cellular growth from gene expression signatures. PLoS Comput Biol 5, e1000257.
-
(2009)
PLoS Comput Biol
, vol.5
-
-
Airoldi, E.M.1
Huttenhower, C.2
Gresham, D.3
Lu, C.4
Caudy, A.A.5
Dunham, M.J.6
Broach, J.R.7
Botstein, D.8
Troyanskaya, O.G.9
-
2
-
-
77953871404
-
Insufficient uracil supply in fully aerobic chemostat cultures of Saccharomyces cerevisiae leads to respiro-fermentative metabolism and double nutrient-limitation
-
Basso TO, Dario MG, Tonso A, Stambuk BU, Gombert AK (2010). Insufficient uracil supply in fully aerobic chemostat cultures of Saccharomyces cerevisiae leads to respiro-fermentative metabolism and double nutrient-limitation. Biotechnol Lett 32, 973-977.
-
(2010)
Biotechnol Lett
, vol.32
, pp. 973-977
-
-
Basso, T.O.1
Dario, M.G.2
Tonso, A.3
Stambuk, B.U.4
Gombert, A.K.5
-
4
-
-
75649152860
-
Growth-limiting intracellular metabolites in yeast growing under diverse nutrient limitations
-
Boer VM, Crutchfield CA, Bradley PH, Botstein D, Rabinowitz JD (2010). Growth-limiting intracellular metabolites in yeast growing under diverse nutrient limitations. Mol Biol Cell 21, 198-211.
-
(2010)
Mol Biol Cell
, vol.21
, pp. 198-211
-
-
Boer, V.M.1
Crutchfield, C.A.2
Bradley, P.H.3
Botstein, D.4
Rabinowitz, J.D.5
-
5
-
-
0030945198
-
Aerobic glycolysis by proliferating cells: A protective strategy against reactive oxygen species
-
Brand K, Hermfisse U (1997a). Aerobic glycolysis by proliferating cells: a protective strategy against reactive oxygen species. FASEB J 11, 388-395. (Pubitemid 27193945)
-
(1997)
FASEB Journal
, vol.11
, Issue.5
, pp. 388-395
-
-
Brand, K.A.1
Hermfisse, U.2
-
6
-
-
0030945198
-
Aerobic glycolysis by proliferating cells: A protective strategy against reactive oxygen species
-
Brand KA, Hermfisse U (1997b). Aerobic glycolysis by proliferating cells: a protective strategy against reactive oxygen species. FASEB J Off Public Federat Am Soc Exp Biol 11, 388-395. (Pubitemid 27193945)
-
(1997)
FASEB Journal
, vol.11
, Issue.5
, pp. 388-395
-
-
Brand, K.A.1
Hermfisse, U.2
-
7
-
-
38749112941
-
Coordination of growth rate, cell cycle, stress response, and metabolic activity in yeast
-
DOI 10.1091/mbc.E07-08-0779
-
Brauer MJ, Huttenhower C, Airoldi EM, Rosenstein R, Matese JC, Gresham D, Boer VM, Troyanskaya OG, Botstein D (2008). Coordination of growth rate, cell cycle, stress response, and metabolic activity in yeast. Mol Biol Cell 19, 352-367. (Pubitemid 351186159)
-
(2008)
Molecular Biology of the Cell
, vol.19
, Issue.1
, pp. 352-367
-
-
Brauer, M.J.1
Huttenhower, C.2
Airoldi, E.M.3
Rosenstein, R.4
Matese, J.C.5
Gresham, D.6
Boer, V.M.7
Troyanskaya, O.G.8
Botstein, D.9
-
8
-
-
18244376808
-
Homeostatic adjustment and metabolic remodeling in glucose-limited yeast cultures
-
DOI 10.1091/mbc.E04-11-0968
-
Brauer MJ, Saldanha AJ, Dolinski K, Botstein D (2005). Homeostatic adjustment and metabolic remodeling in glucose-limited yeast cultures. Mol Biol Cell 16, 2503-2517. (Pubitemid 40632230)
-
(2005)
Molecular Biology of the Cell
, vol.16
, Issue.5
, pp. 2503-2517
-
-
Brauer, M.J.1
Saldanha, A.J.2
Dolinski, K.3
Botstein, D.4
-
9
-
-
84866076360
-
Nutritional control of growth and development in yeast
-
Broach J (2012). Nutritional control of growth and development in yeast. Genetics 192, 73-105.
-
(2012)
Genetics
, vol.192
, pp. 73-105
-
-
Broach, J.1
-
11
-
-
0000089325
-
Observations on the carbohydrate metabolism of tumours
-
Crabtree H (1929). Observations on the carbohydrate metabolism of tumours. Biochem J 23, 536-545.
-
(1929)
Biochem J
, vol.23
, pp. 536-545
-
-
Crabtree, H.1
-
12
-
-
84860512005
-
Links between metabolism and cancer
-
Dang C (2012). Links between metabolism and cancer. Genes Dev 26, 877-890.
-
(2012)
Genes Dev
, vol.26
, pp. 877-890
-
-
Dang, C.1
-
13
-
-
0013936130
-
The Crabtree effect: A regulatory system in yeast
-
De Deken R (1966). The Crabtree effect: a regulatory system in yeast. J General Microbiol 44, 149-156.
-
(1966)
J General Microbiol
, vol.44
, pp. 149-156
-
-
De Deken, R.1
-
14
-
-
2542561169
-
Akt stimulates aerobic glycolysis in cancer cells
-
DOI 10.1158/0008-5472.CAN-03-2904
-
Elstrom R et al. (2004). Akt stimulates aerobic glycolysis in cancer cells. Cancer Res 64, 3892-3899. (Pubitemid 38697301)
-
(2004)
Cancer Research
, vol.64
, Issue.11
, pp. 3892-3899
-
-
Elstrom, R.L.1
Bauer, D.E.2
Buzzai, M.3
Karnauskas, R.4
Harris, M.H.5
Plas, D.R.6
Zhuang, H.7
Cinalli, R.M.8
Alavi, A.9
Rudin, C.M.10
Thompson, C.B.11
-
15
-
-
0033578424
-
Systematic changes in gene expression patterns following adaptive evolution in yeast
-
Ferea T, Botstein D, Brown P, Rosenzweig R (1999). Systematic changes in gene expression patterns following adaptive evolution in yeast. Proc Natl Acad Sci USA 96, 9721.
-
(1999)
Proc Natl Acad Sci USA
, vol.96
, pp. 9721
-
-
Ferea, T.1
Botstein, D.2
Brown, P.3
Rosenzweig, R.4
-
16
-
-
78951484491
-
System-level analysis of genes and functions affecting survival during nutrient starvation in Saccharomyces cerevisiae
-
Gresham D, Boer V, Caudy A, Ziv N, Brandt NJ, Storey JD, Botstein D (2010). System-level analysis of genes and functions affecting survival during nutrient starvation in Saccharomyces cerevisiae. Genetics 187, 299-317.
-
(2010)
Genetics
, vol.187
, pp. 299-317
-
-
Gresham, D.1
Boer, V.2
Caudy, A.3
Ziv, N.4
Brandt, N.J.5
Storey, J.D.6
Botstein, D.7
-
17
-
-
58149166731
-
The repertoire and dynamics of evolutionary adaptations to controlled nutrient-limited environments in yeast
-
Gresham D, Desai M, Tucker C, Jenq H, Pai D, Ward A, DeSevo C, Botstein D, Dunham M (2008). The repertoire and dynamics of evolutionary adaptations to controlled nutrient-limited environments in yeast. PLoS Genetics 4, e1000303.
-
(2008)
PLoS Genetics
, vol.4
-
-
Gresham, D.1
Desai, M.2
Tucker, C.3
Jenq, H.4
Pai, D.5
Ward, A.6
DeSevo, C.7
Botstein, D.8
Dunham, M.9
-
19
-
-
66249108601
-
Understanding the Warburg effect: The metabolic requirements of cell proliferation
-
Heiden MGV, Cantley LC, Thompson CB (2009). Understanding the Warburg effect: the metabolic requirements of cell proliferation. Science 324, 1029-1033.
-
(2009)
Science
, vol.324
, pp. 1029-1033
-
-
Heiden, M.G.V.1
Cantley, L.C.2
Thompson, C.B.3
-
20
-
-
0034904776
-
Growth factors can influence cell growth and survival through effects on glucose metabolism
-
DOI 10.1128/MCB.21.17.5899-5912.2001
-
Heiden MGV, Plas DR, Rathmell JC, Fox CJ, Harris MH, Thompson CB (2001). Growth factors can influence cell growth and survival through effects on glucose metabolism. Mol Cell Biol 21, 5899-5912. (Pubitemid 32737807)
-
(2001)
Molecular and Cellular Biology
, vol.21
, Issue.17
, pp. 5899-5912
-
-
Vander, H.M.G.1
Plas, D.R.2
Rathmell, J.C.3
Fox, C.J.4
Harris, M.H.5
Thompson, C.B.6
-
21
-
-
79958192153
-
The Hog1 mitogen-activated protein kinase mediates a hypoxic response in Saccharomyces cerevisiae
-
Hickman M, Spatt D, Winston F (2011). The Hog1 mitogen-activated protein kinase mediates a hypoxic response in Saccharomyces cerevisiae. Genetics 188, 325-338.
-
(2011)
Genetics
, vol.188
, pp. 325-338
-
-
Hickman, M.1
Spatt, D.2
Winston, F.3
-
22
-
-
35648957173
-
Heme levels switch the function of Hap1 of Saccharomyces cerevisiae between transcriptional activator and transcriptional repressor
-
DOI 10.1128/MCB.00887-07
-
Hickman M, Winston F (2007). Heme levels switch the function of Hap1 of Saccharomyces cerevisiae between transcriptional activator and transcriptional repressor. Mol Cell Biol 27, 7414-7424. (Pubitemid 350033649)
-
(2007)
Molecular and Cellular Biology
, vol.27
, Issue.21
, pp. 7414-7424
-
-
Hickman, M.J.1
Winston, F.2
-
23
-
-
0018346790
-
Regulation of cell size in the yeast Saccharomyces cerevisiae
-
Johnston G, Ehrhardt C, Lorincz A, Carter B (1979). Regulation of cell size in the yeast Saccharomyces cerevisiae. J Bacteriol 137, 1-5. (Pubitemid 9093910)
-
(1979)
Journal of Bacteriology
, vol.137
, Issue.1
, pp. 1-5
-
-
Johnston, G.C.1
Ehrhardt, C.W.2
Lorincz, A.3
Carter, B.L.A.4
-
24
-
-
0017581306
-
Coordination of growth with cell division in the yeast Saccharomyces cerevisiae
-
Johnston G, Pringle J, Hartwell L (1977). Coordination of growth with cell division in the yeast Saccharomyces cerevisiae. Exp Cell Res 105, 79-98. (Pubitemid 8066451)
-
(1977)
Experimental Cell Research
, vol.105
, Issue.1
, pp. 79-98
-
-
Johnston, G.C.1
Pringle, J.R.2
Hartwell, L.H.3
-
25
-
-
0037135134
-
Systematic identification of pathways that couple cell growth and division in yeast
-
DOI 10.1126/science.1070850
-
Jorgensen P, Nishikawa J, Breitkreutz B, Tyers M (2002). Systematic identification of pathways that couple cell growth and division in yeast. Sciences STKE 297, 395-400. (Pubitemid 34790768)
-
(2002)
Science
, vol.297
, Issue.5580
, pp. 395-400
-
-
Jorgensen, P.1
Nishikawa, J.L.2
Breitkreutz, B.-J.3
Tyers, M.4
-
26
-
-
78649711427
-
The control of the metabolic switch in cancers by oncogenes and tumor suppressor genes
-
Levine A, Puzio-Kuter A (2010). The control of the metabolic switch in cancers by oncogenes and tumor suppressor genes. Science 330, 1340.
-
(2010)
Science
, vol.330
, pp. 1340
-
-
Levine, A.1
Puzio-Kuter, A.2
-
27
-
-
71149121704
-
Coordination of gene expression with growth rate: A feedback or a feed-forward strategy?
-
Levy S, Barkai N (2009). Coordination of gene expression with growth rate: a feedback or a feed-forward strategy? FEBS Lett 583, 3974-3978.
-
(2009)
FEBS Lett
, vol.583
, pp. 3974-3978
-
-
Levy, S.1
Barkai, N.2
-
28
-
-
39749140606
-
Strategy of transcription regulation in the budding yeast
-
Levy S, Ihmels J, Carmi M, Weinberger A, Friedlander G, Barkai N (2007). Strategy of transcription regulation in the budding yeast. PLoS ONE 2, e250.
-
(2007)
PLoS ONE
, vol.2
-
-
Levy, S.1
Ihmels, J.2
Carmi, M.3
Weinberger, A.4
Friedlander, G.5
Barkai, N.6
-
29
-
-
0021792065
-
The role of high rates of glycolysis and glutamine utilization in rapidly dividing cells
-
DOI 10.1007/BF01116556
-
Newsholme E, Crabtree B, Ardawi M (1985). The role of high rates of glycolysis and glutamine utilization in rapidly dividing cells. Biosci Reports 5, 393-400. (Pubitemid 15067685)
-
(1985)
Bioscience Reports
, vol.5
, Issue.5
, pp. 393-400
-
-
Newsholme, E.A.1
Crabtree, B.2
Ardawi, M.S.M.3
-
30
-
-
0016793098
-
Genetic control of cell size at cell division in yeast
-
Nurse P (1975). Genetic control of cell size at cell division in yeast. Nature 256, 547-551.
-
(1975)
Nature
, vol.256
, pp. 547-551
-
-
Nurse, P.1
-
31
-
-
80655136471
-
Survival of starving yeast is correlated with oxidative stress response and nonrespiratory mitochondrial function
-
Petti AA, Crutchfield CA, Rabinowitz JD, Botstein D (2011). Survival of starving yeast is correlated with oxidative stress response and nonrespiratory mitochondrial function. Proc Natl Acad Sci USA 108, E1089-E1098.
-
(2011)
Proc Natl Acad Sci USA
, vol.108
-
-
Petti, A.A.1
Crutchfield, C.A.2
Rabinowitz, J.D.3
Botstein, D.4
-
32
-
-
0035917865
-
Cooperation and competition in the evolution of ATP-producing pathways
-
Pfeiffer T, Schuster S, Bonhoeffer S (2001). Cooperation and competition in the evolution of ATP-producing pathways. Science 292, 504-507. (Pubitemid 32335953)
-
(2001)
Science
, vol.292
, Issue.5516
, pp. 504-507
-
-
Pfeiffer, T.1
Schuster, S.2
Bonhoeffer, S.3
-
33
-
-
0034025190
-
Saccharomyces cerevisiae PAU genes are induced by anaerobiosis
-
Rachidi N, Martinez M, Barre P, Blondin B (2002). Saccharomyces cerevisiae PAU genes are induced by anaerobiosis. Mol Microbiol 35, 1421-1430.
-
(2002)
Mol Microbiol
, vol.35
, pp. 1421-1430
-
-
Rachidi, N.1
Martinez, M.2
Barre, P.3
Blondin, B.4
-
34
-
-
84857427738
-
Chromatin and transcription in yeast
-
Rando O, Winston F (2012). Chromatin and transcription in yeast. Genetics 190, 351-387.
-
(2012)
Genetics
, vol.190
, pp. 351-387
-
-
Rando, O.1
Winston, F.2
-
35
-
-
4344685444
-
Nutritional homeostasis in batch and steady-state culture of yeast
-
DOI 10.1091/mbc.E04-04-0306
-
Saldanha AJ, Brauer MJ, Botstein D (2004). Nutritional homeostasis in batch and steady-state culture of yeast. Mol Biol Cell 15, 4089-4104. (Pubitemid 39122014)
-
(2004)
Molecular Biology of the Cell
, vol.15
, Issue.9
, pp. 4089-4104
-
-
Saldanha, A.J.1
Brauer, M.J.2
Botstein, D.3
-
36
-
-
79953661070
-
Genome-scale metabolic modeling elucidates the role of proliferative adaptation in causing the Warburg effect
-
Shlomi T, Benyamini T, Gottlieb E, Sharan R, Ruppin E (2011). Genome-scale metabolic modeling elucidates the role of proliferative adaptation in causing the Warburg effect. PLoS Comput Biol 7, e1002018.
-
(2011)
PLoS Comput Biol
, vol.7
-
-
Shlomi, T.1
Benyamini, T.2
Gottlieb, E.3
Sharan, R.4
Ruppin, E.5
-
37
-
-
77951081705
-
Metabolic cycling in single yeast cells from unsynchronized steady-state populations limited on glucose or phosphate
-
Silverman SJ et al. (2010). Metabolic cycling in single yeast cells from unsynchronized steady-state populations limited on glucose or phosphate. Proc Natl Acad Sci USA 107, 6946-6951.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 6946-6951
-
-
Silverman, S.J.1
-
38
-
-
84861167247
-
Inference of sparse networks with unobserved variables. Application to gene regulatory networks
-
Slavov N (2010). Inference of sparse networks with unobserved variables. Application to gene regulatory networks. JMLR WCP 9, 757-764.
-
(2010)
JMLR WCP
, vol.9
, pp. 757-764
-
-
Slavov, N.1
-
39
-
-
84861120908
-
A conserved cell growth cycle can account for the environmental stress responses of divergent eukaryotes
-
Slavov N, Airoldi EM, van Oudenaarden A, Botstein D (2012). A conserved cell growth cycle can account for the environmental stress responses of divergent eukaryotes. Mol Biol Cell 23, 1986-1997.
-
(2012)
Mol Biol Cell
, vol.23
, pp. 1986-1997
-
-
Slavov, N.1
Airoldi, E.M.2
Van Oudenaarden, A.3
Botstein, D.4
-
41
-
-
79959199873
-
Coupling among growth rate response, metabolic cycle, and cell division cycle in yeast
-
Slavov N, Botstein D (2011). Coupling among growth rate response, metabolic cycle, and cell division cycle in yeast. Mol Biol Cell 22, 1997-2009.
-
(2011)
Mol Biol Cell
, vol.22
, pp. 1997-2009
-
-
Slavov, N.1
Botstein, D.2
-
42
-
-
63149129627
-
Correlation signature of the macroscopic states of the gene regulatory network in cancer
-
Slavov N, Dawson KA (2009). Correlation signature of the macroscopic states of the gene regulatory network in cancer. Proc Natl Acad Sci USA 106, 4079-4084.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 4079-4084
-
-
Slavov, N.1
Dawson, K.A.2
-
43
-
-
82755168799
-
Metabolic cycling without cell division cycling in respiring yeast
-
Slavov N, Macinskas J, Caudy A, Botstein D (2011). Metabolic cycling without cell division cycling in respiring yeast. Proc Natl Acad Sci USA 108, 19090-19095.
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, pp. 19090-19095
-
-
Slavov, N.1
Macinskas, J.2
Caudy, A.3
Botstein, D.4
-
45
-
-
77649243261
-
Synergistic roles of the proteasome and autophagy for mitochondrial maintenance and chronological lifespan in fission yeast
-
Takeda K, Yoshida T, Kikuchi S, Nagao K, Kokubu A, Pluskal T, Villar-Briones A, Nakamura T, Yanagida M (2010). Synergistic roles of the proteasome and autophagy for mitochondrial maintenance and chronological lifespan in fission yeast. Proc Natl Acad Sci USA 107, 3540-3545.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 3540-3545
-
-
Takeda, K.1
Yoshida, T.2
Kikuchi, S.3
Nagao, K.4
Kokubu, A.5
Pluskal, T.6
Villar-Briones, A.7
Nakamura, T.8
Yanagida, M.9
-
46
-
-
0032762991
-
Genome-wide transcriptional analysis of aerobic and anaerobic chemostat cultures of Saccharomyces cerevisiae
-
ter Linde JJM, Liang H, Davis RW, Steensma HY, van Dijken JP, Pronk JT (1999). Genome-wide transcriptional analysis of aerobic and anaerobic chemostat cultures of Saccharomyces cerevisiae. J Bacteriol 181, 7409-7413.
-
(1999)
J Bacteriol
, vol.181
, pp. 7409-7413
-
-
Ter Linde, J.J.M.1
Liang, H.2
Davis, R.W.3
Steensma, H.Y.4
Van Dijken, J.P.5
Pronk, J.T.6
-
47
-
-
0027424777
-
Isolation and characterization of autophagy-defective mutants of Saccharomyces cerevisiae
-
DOI 10.1016/0014-5793(93)80398-E
-
Tsukada M, Ohsumi Y (1993). Isolation and characterization of autophagy-defective mutants of Saccharomyces cerevisiae. FEBS Lett 333, 169-174. (Pubitemid 23306962)
-
(1993)
FEBS Letters
, vol.333
, Issue.1-2
, pp. 169-174
-
-
Tsukada, M.1
Ohsumi, Y.2
-
48
-
-
77951803596
-
Catabolic efficiency of aerobic glycolysis: The Warburg effect revisited
-
Vazquez A, Liu J, Zhou Y, Oltvai ZN (2010). Catabolic efficiency of aerobic glycolysis: the Warburg effect revisited. BMC Syst Biol 4, 58.
-
(2010)
BMC Syst Biol
, vol.4
, pp. 58
-
-
Vazquez, A.1
Liu, J.2
Zhou, Y.3
Oltvai, Z.N.4
-
51
-
-
80052324811
-
Hunger artists: Yeast adapted to carbon limitation show trade-offs under carbon sufficiency
-
Wenger J, Piotrowski J, Nagarajan S, Chiotti K, Sherlock G, Rosenzweig F (2011). Hunger artists: yeast adapted to carbon limitation show trade-offs under carbon sufficiency. PLoS Genetics 7, e1002202.
-
(2011)
PLoS Genetics
, vol.7
-
-
Wenger, J.1
Piotrowski, J.2
Nagarajan, S.3
Chiotti, K.4
Sherlock, G.5
Rosenzweig, F.6
-
52
-
-
57749088701
-
Myc regulates a transcriptional program that stimulates mitochondrial glutaminolysis and leads to glutamine addiction
-
Wise DR et al. (2008). Myc regulates a transcriptional program that stimulates mitochondrial glutaminolysis and leads to glutamine addiction. Proc Natl Acad Sci USA 105, 18782-18787.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 18782-18787
-
-
Wise, D.R.1
-
53
-
-
72449171935
-
Growth landscape formed by perception and import of glucose in yeast
-
Youk H, Van Oudenaarden A (2009). Growth landscape formed by perception and import of glucose in yeast. Nature 462, 875-879.
-
(2009)
Nature
, vol.462
, pp. 875-879
-
-
Youk, H.1
Van Oudenaarden, A.2
|