메뉴 건너뛰기




Volumn 66, Issue , 2012, Pages 411-427

Origin and diversification of eukaryotes

Author keywords

cytoskeleton; eukaryotic diversity; mitochondria; nucleus; protists; tree of life

Indexed keywords

BACTERIAL DNA;

EID: 84872227600     PISSN: 00664227     EISSN: 15453251     Source Type: Book Series    
DOI: 10.1146/annurev-micro-090110-102808     Document Type: Article
Times cited : (73)

References (128)
  • 2
    • 33644782643 scopus 로고    scopus 로고
    • The new higher level classification of eukaryotes with emphasis on the taxonomy of protists
    • Adl SM, Simpson AGB, Farmer MA, Andersen RA, Anderson OR, et al. 2005. The new higher level classification of eukaryotes with emphasis on the taxonomy of protists. J. Eukaryot. Microbiol. 52:399-451
    • (2005) J. Eukaryot. Microbiol , vol.52 , pp. 399-451
    • Adl, S.M.1    Agb, S.2    Farmer, M.A.3    Andersen, R.A.4    Anderson, O.R.5
  • 3
    • 32044467742 scopus 로고    scopus 로고
    • Biology and systematics of heterokont and haptophyte algae
    • Andersen RA. 2004. Biology and systematics of heterokont and haptophyte algae. Am. J. Bot. 91:1508-22
    • (2004) Am. J. Bot , vol.91 , pp. 1508-1522
    • Andersen, R.A.1
  • 4
    • 21144441817 scopus 로고    scopus 로고
    • Lateral gene transfer in eukaryotes
    • Andersson JO. 2005. Lateral gene transfer in eukaryotes. Cell. Mol. Life Sci. 62:1182-97
    • (2005) Cell. Mol. Life Sci , vol.62 , pp. 1182-1197
    • Andersson, J.O.1
  • 5
    • 33745618670 scopus 로고    scopus 로고
    • Evolution of four gene families with patchy phylogenetic distributions: Influx of genes into protist genomes
    • Andersson JO, Hirt RP, Foster PG, Roger AJ. 2006. Evolution of four gene families with patchy phylogenetic distributions: influx of genes into protist genomes. BMC Evol. Biol. 6:18
    • (2006) BMC Evol. Biol , vol.6 , pp. 18
    • Andersson, J.O.1    Hirt, R.P.2    Foster, P.G.3    Roger, A.J.4
  • 6
    • 58349101981 scopus 로고    scopus 로고
    • The puzzle of plastid evolution
    • Archibald JM. 2009. The puzzle of plastid evolution. Curr. Biol. 19:R81-88
    • (2009) Curr. Biol , vol.19
    • Archibald, J.M.1
  • 7
    • 84855253576 scopus 로고    scopus 로고
    • Origin of eukaryotic cells: 40 years on
    • Archibald JM. 2011. Origin of eukaryotic cells: 40 years on. Symbiosis 54:69-86
    • (2011) Symbiosis , vol.54 , pp. 69-86
    • Archibald, J.M.1
  • 8
    • 69249222668 scopus 로고    scopus 로고
    • Going, going, not quite gone: Nucleomorphs as a case study in nuclear genome reduction
    • Archibald JM, Lane CE. 2009. Going, going, not quite gone: nucleomorphs as a case study in nuclear genome reduction. J. Hered. 100:582-90
    • (2009) J. Hered , vol.100 , pp. 582-590
    • Archibald, J.M.1    Lane, C.E.2
  • 9
    • 14544283723 scopus 로고    scopus 로고
    • Root of the Eukaryota tree as inferred from combined maximum likelihood analyses of multiple molecular sequence data
    • Arisue N, Hasegawa M, Hashimoto T. 2005. Root of the Eukaryota tree as inferred from combined maximum likelihood analyses of multiple molecular sequence data. Mol. Biol. Evol. 22:409-20
    • (2005) Mol. Biol. Evol , vol.22 , pp. 409-420
    • Arisue, N.1    Hasegawa, M.2    Hashimoto, T.3
  • 10
    • 0037841805 scopus 로고    scopus 로고
    • The deep roots of eukaryotes
    • Baldauf SL. 2003. The deep roots of eukaryotes. Science 300:1703-6
    • (2003) Science , vol.300 , pp. 1703-1706
    • Baldauf, S.L.1
  • 11
    • 0034602344 scopus 로고    scopus 로고
    • A kingdom-level phylogeny of eukaryotes based on combined protein data
    • Baldauf SL, Roger AJ, Wenk-Siefert I, Doolittle WF. 2000. A kingdom-level phylogeny of eukaryotes based on combined protein data. Science 290:972-77
    • (2000) Science , vol.290 , pp. 972-977
    • Baldauf, S.L.1    Roger, A.J.2    Wenk-Siefert, I.3    Doolittle, W.F.4
  • 12
    • 70549088079 scopus 로고    scopus 로고
    • Early steps in plastid evolution: Current ideas and controversies
    • Bodyl A, Mackiewicz P, Stiller JW. 2009. Early steps in plastid evolution: current ideas and controversies. BioEssays 31:1219-32
    • (2009) BioEssays , vol.31 , pp. 1219-1232
    • Bodyl, A.1    MacKiewicz, P.2    Stiller, J.W.3
  • 13
    • 60949088852 scopus 로고    scopus 로고
    • Chromalveolate plastids: Direct descent or multiple endosymbioses?
    • Bodyl A, Stiller JW, Mackiewicz P. 2009. Chromalveolate plastids: direct descent or multiple endosymbioses? Trends Ecol. Evol. 24:119-21
    • (2009) Trends Ecol. Evol , vol.24 , pp. 119-121
    • Bodyl, A.1    Stiller, J.W.2    MacKiewicz, P.3
  • 14
    • 38749143605 scopus 로고    scopus 로고
    • Molecular evolution of Foraminifera
    • ed. LA Katz, D Bhattacharya, Oxford: Oxford Univ. Press
    • Bowser SS, Habura A, Pawlowski J. 2006. Molecular evolution of Foraminifera. In Genome Evolution in Eukaryotic Microbes, ed. LA Katz, D Bhattacharya, pp. 78-93. Oxford: Oxford Univ. Press
    • (2006) Genome Evolution in Eukaryotic Microbes , pp. 78-93
    • Bowser, S.S.1    Habura, A.2    Pawlowski, J.3
  • 16
    • 0344861878 scopus 로고    scopus 로고
    • Mitochondrial genomes: Anything goes
    • Burger G, Gray MW, Lang BF. 2003. Mitochondrial genomes: anything goes. Trends Genet. 19:709-16
    • (2003) Trends Genet , vol.19 , pp. 709-716
    • Burger, G.1    Gray, M.W.2    Lang, B.F.3
  • 17
    • 73149097943 scopus 로고    scopus 로고
    • Large-scale phylogenomic analyses reveal that two enigmatic protist lineages, Telonemia and Centroheliozoa, are related to photosynthetic chromalveolates
    • Burki F, Inagaki Y, Brate J, Archibald JM, Keeling PJ, et al. 2009. Large-scale phylogenomic analyses reveal that two enigmatic protist lineages, Telonemia and Centroheliozoa, are related to photosynthetic chromalveolates. Genome Biol. Evol. 1:231-38
    • (2009) Genome Biol. Evol , vol.1 , pp. 231-238
    • Burki, F.1    Inagaki, Y.2    Brate, J.3    Archibald, J.M.4    Keeling, P.J.5
  • 19
    • 46949092431 scopus 로고    scopus 로고
    • Phylogenomics reveals a new 'megagroup' including most photosynthetic eukaryotes
    • Burki F, Shalchian-Tabrizi K, Pawlowski J. 2008. Phylogenomics reveals a new 'megagroup' including most photosynthetic eukaryotes. Biol. Lett. 4:366-69
    • (2008) Biol. Lett , vol.4 , pp. 366-369
    • Burki, F.1    Shalchian-Tabrizi, K.2    Pawlowski, J.3
  • 20
    • 0019764215 scopus 로고
    • Eukaryote kingdoms: Seven or nine?
    • Cavalier-Smith T. 1981. Eukaryote kingdoms: seven or nine? Biosystems 14:461-81
    • (1981) Biosystems , vol.14 , pp. 461-481
    • Cavalier-Smith, T.1
  • 21
    • 85000484532 scopus 로고
    • Cell-cycles, diplokaryosis and the archezoan origin of sex
    • Cavalier-Smith T. 1995. Cell-cycles, diplokaryosis and the archezoan origin of sex. Arch. Protistenkd. 145:189-207
    • (1995) Arch. Protistenkd , vol.145 , pp. 189-207
    • Cavalier-Smith, T.1
  • 22
    • 0030803907 scopus 로고    scopus 로고
    • Amoeboflagellates and mitochondrial cristae in eukaryote evolution: Megasystematics of the new protozoan subkingdoms Eozoa and Neozoa
    • Cavalier-Smith T. 1997. Amoeboflagellates and mitochondrial cristae in eukaryote evolution: megasystematics of the new protozoan subkingdoms Eozoa and Neozoa. Arch. Protistenkd. 147:237-58
    • (1997) Arch. Protistenkd , vol.147 , pp. 237-258
    • Cavalier-Smith, T.1
  • 23
    • 0032838597 scopus 로고    scopus 로고
    • Principles of protein and lipid targeting in secondary symbiogenesis: Euglenoid, dinoflagellate, and sporozoan plastid origins and the eukaryote family tree
    • Cavalier-Smith T. 1999. Principles of protein and lipid targeting in secondary symbiogenesis: euglenoid, dinoflagellate, and sporozoan plastid origins and the eukaryote family tree. J. Eukaryot. Microbiol. 46:347-66
    • (1999) J. Eukaryot. Microbiol , vol.46 , pp. 347-366
    • Cavalier-Smith, T.1
  • 24
    • 0034177573 scopus 로고    scopus 로고
    • Membrane heredity and early chloroplast evolution
    • Cavalier-Smith T. 2000. Membrane heredity and early chloroplast evolution. Trends Plant Sci. 5:173-82
    • (2000) Trends Plant Sci , vol.5 , pp. 173-182
    • Cavalier-Smith, T.1
  • 25
    • 0036897998 scopus 로고    scopus 로고
    • Nucleomorphs: Enslaved algal nuclei
    • Cavalier-Smith T. 2002. Nucleomorphs: enslaved algal nuclei. Curr. Opin. Microbiol. 5:612-19
    • (2002) Curr. Opin. Microbiol , vol.5 , pp. 612-619
    • Cavalier-Smith, T.1
  • 26
    • 0036208071 scopus 로고    scopus 로고
    • The phagotrophic origin of eukaryotes and phylogenetic classification of protozoa
    • Cavalier-Smith T. 2002. The phagotrophic origin of eukaryotes and phylogenetic classification of protozoa. Int. J. Syst. Evol. Microbiol. 52:297-354
    • (2002) Int. J. Syst. Evol. Microbiol , vol.52 , pp. 297-354
    • Cavalier-Smith, T.1
  • 28
    • 61849169707 scopus 로고    scopus 로고
    • Megaphylogeny, cell body plans, adaptive zones: Causes and timing of eukaryote basal radiations
    • Cavalier-Smith T. 2009. Megaphylogeny, cell body plans, adaptive zones: causes and timing of eukaryote basal radiations. J. Eukaryot. Microbiol. 56:26-33
    • (2009) J. Eukaryot. Microbiol , vol.56 , pp. 26-33
    • Cavalier-Smith, T.1
  • 29
    • 77954090275 scopus 로고    scopus 로고
    • Kingdoms Protozoa and Chromista and the eozoan root of the eukaryotic tree
    • Cavalier-Smith T. 2010. Kingdoms Protozoa and Chromista and the eozoan root of the eukaryotic tree. Biol. Lett. 6:342-45
    • (2010) Biol. Lett , vol.6 , pp. 342-345
    • Cavalier-Smith, T.1
  • 30
    • 77949910116 scopus 로고    scopus 로고
    • Origin of the cell nucleus, mitosis and sex: Roles of intracellular coevolution
    • Cavalier-Smith T. 2010. Origin of the cell nucleus, mitosis and sex: roles of intracellular coevolution. Biol. Direct 5:7
    • (2010) Biol. Direct , vol.5 , pp. 7
    • Cavalier-Smith, T.1
  • 31
    • 0030442691 scopus 로고    scopus 로고
    • Molecular phylogeny of the free-living archezoan Trepomonas agilis and the nature of the first eukaryote
    • Cavalier-Smith T, Chao EE. 1996. Molecular phylogeny of the free-living archezoan Trepomonas agilis and the nature of the first eukaryote. J. Mol. Evol. 43:551-62
    • (1996) J. Mol. Evol , vol.43 , pp. 551-562
    • Cavalier-Smith, T.1    Chao, E.E.2
  • 32
    • 0029121044 scopus 로고
    • The opalozoan Apusomonas is related to the common ancestor of animals, fungi, and choanoflagellates
    • Cavalier-Smith T, Chao EEY. 1995. The opalozoan Apusomonas is related to the common ancestor of animals, fungi, and choanoflagellates. Proc. R. Soc. Lond. Ser. B 261:1-6
    • (1995) Proc. R. Soc. Lond. ser B , vol.261 , pp. 1-6
    • Cavalier-Smith, T.1    Chao, E.E.Y.2
  • 33
    • 0242456821 scopus 로고    scopus 로고
    • Phylogeny and classification of phylumCercozoa (Protozoa)
    • Cavalier-Smith T, Chao EEY. 2003. Phylogeny and classification of phylumCercozoa (Protozoa). Protist 154:341-58
    • (2003) Protist , vol.154 , pp. 341-358
    • Cavalier-Smith, T.1    Chao, E.E.Y.2
  • 34
    • 2942725903 scopus 로고    scopus 로고
    • Molecular phylogeny of 'Amoebozoa' and the evolutionary significance of the unikont Phalansterium
    • Cavalier-Smith T, Chao EEY, Oates B. 2004. Molecular phylogeny of 'Amoebozoa' and the evolutionary significance of the unikont Phalansterium. Eur. J. Protistol. 40:21-48
    • (2004) Eur. J. Protistol , vol.40 , pp. 21-48
    • Cavalier-Smith, T.1    Chao, E.E.Y.2    Oates, B.3
  • 35
    • 33745951984 scopus 로고    scopus 로고
    • On the origin and functions of RNA-mediated silencing: From protists to man
    • Cerutti H, Casas-Mollano JA. 2006. On the origin and functions of RNA-mediated silencing: from protists to man. Curr. Genet. 50:81-99
    • (2006) Curr. Genet , vol.50 , pp. 81-99
    • Cerutti, H.1    Casas-Mollano, J.A.2
  • 36
    • 67849121611 scopus 로고    scopus 로고
    • Extrachromosomal circular DNA in eukaryotes: Possible involvement in the plasticity of tandem repeats
    • Cohen S, Segal D. 2009. Extrachromosomal circular DNA in eukaryotes: possible involvement in the plasticity of tandem repeats. Cytogenet. Genome Res. 124:327-38
    • (2009) Cytogenet. Genome Res , vol.124 , pp. 327-338
    • Cohen, S.1    Segal, D.2
  • 37
    • 80155142141 scopus 로고    scopus 로고
    • Large-scale phylogenomic analyses indicate a deep origin of primary plastids within cyanobacteria
    • Criscuolo A, Gribaldo S. 2011. Large-scale phylogenomic analyses indicate a deep origin of primary plastids within cyanobacteria. Mol. Biol. Evol. 28:3019-32
    • (2011) Mol. Biol. Evol , vol.28 , pp. 3019-3032
    • Criscuolo, A.1    Gribaldo, S.2
  • 38
    • 33750810896 scopus 로고    scopus 로고
    • The tree of one percent
    • Dagan T, MartinW. 2006. The tree of one percent. Genome Biol. 7:118
    • (2006) Genome Biol , vol.7 , pp. 118
    • Dagan, T.1    Martin, W.2
  • 39
    • 0032727696 scopus 로고    scopus 로고
    • Tracing the tread of plastid diversity through the tapestry of life
    • Delwiche CF. 1999. Tracing the tread of plastid diversity through the tapestry of life. Am. Nat. 154:S164-77
    • (1999) Am. Nat , vol.154
    • Delwiche, C.F.1
  • 40
    • 0029897169 scopus 로고    scopus 로고
    • Rampant horizontal transfer and duplication of rubisco genes in eubacteria and plastids
    • Delwiche CF, Palmer JD. 1996. Rampant horizontal transfer and duplication of rubisco genes in eubacteria and plastids. Mol. Biol. Evol. 13:873-82
    • (1996) Mol. Biol. Evol , vol.13 , pp. 873-882
    • Delwiche, C.F.1    Palmer, J.D.2
  • 41
    • 84858411861 scopus 로고    scopus 로고
    • Rooting the eukaryotic tree with mitochondrial and bacterial proteins
    • Derelle R, Lang BF. 2011. Rooting the eukaryotic tree with mitochondrial and bacterial proteins. Mol. Biol. Evol. 29:1277-89
    • (2011) Mol. Biol. Evol , vol.29 , pp. 1277-1289
    • Derelle, R.1    Lang, B.F.2
  • 42
    • 40849119798 scopus 로고    scopus 로고
    • Genes of cyanobacterial origin in plant nuclear genomes point to a heterocyst-forming plastid ancestor
    • Deusch O, Landan G, Roettger M, Gruenheit N, Kowallik KV, et al. 2008. Genes of cyanobacterial origin in plant nuclear genomes point to a heterocyst-forming plastid ancestor. Mol. Biol. Evol. 25:748-61
    • (2008) Mol. Biol. Evol , vol.25 , pp. 748-761
    • Deusch, O.1    Landan, G.2    Roettger, M.3    Gruenheit, N.4    Kowallik, K.V.5
  • 43
    • 0032404453 scopus 로고    scopus 로고
    • You are what you eat: A gene transfer ratchet could account for bacterial genes in eukaryotic nuclear genomes
    • DoolittleWF. 1998. You are what you eat: A gene transfer ratchet could account for bacterial genes in eukaryotic nuclear genomes. Trends Genet. 14:307-11
    • (1998) Trends Genet , vol.14 , pp. 307-311
    • Doolittle, W.F.1
  • 44
    • 0033603539 scopus 로고    scopus 로고
    • Phylogenetic classification and the universal tree
    • DoolittleWF. 1999. Phylogenetic classification and the universal tree. Science 284:2124-28
    • (1999) Science , vol.284 , pp. 2124-2128
    • Doolittle, W.F.1
  • 45
    • 0032844737 scopus 로고    scopus 로고
    • Gene descent, duplication, and horizontal transfer in the evolution of glutamyl-and glutaminyl-tRNA synthetases
    • Doolittle WF, Brown JR. 1999. Gene descent, duplication, and horizontal transfer in the evolution of glutamyl-and glutaminyl-tRNA synthetases. J. Mol. Evol. 49:485-95
    • (1999) J. Mol. Evol , vol.49 , pp. 485-495
    • Doolittle, W.F.1    Brown, J.R.2
  • 46
    • 33747810433 scopus 로고    scopus 로고
    • Multiple secondary origins of the anaerobic lifestyle in eukaryotes
    • Embley TM. 2006. Multiple secondary origins of the anaerobic lifestyle in eukaryotes. Philos. Trans. R. Soc. Lond. B 361:1055-67
    • (2006) Philos. Trans. R. Soc. Lond B , vol.361 , pp. 1055-1067
    • Embley, T.M.1
  • 47
    • 33645456207 scopus 로고    scopus 로고
    • Eukaryotic evolution, changes and challenges
    • Embley TM, MartinW. 2006. Eukaryotic evolution, changes and challenges. Nature 440:623-30
    • (2006) Nature , vol.440 , pp. 623-630
    • Embley, T.M.1    Martin, W.2
  • 49
    • 0347519176 scopus 로고    scopus 로고
    • Mechanisms of germ cell specification across the metazoans: Epigenesis and preformation
    • Extavour CG, Akam M. 2003. Mechanisms of germ cell specification across the metazoans: epigenesis and preformation. Development 130:5869-84
    • (2003) Development , vol.130 , pp. 5869-5884
    • Extavour, C.G.1    Akam, M.2
  • 50
    • 84872248483 scopus 로고    scopus 로고
    • Evolution of the metazoan germline: A unifying hypothesis
    • Extavour CGM, Wilkins AS. 2008. Evolution of the metazoan germline: a unifying hypothesis. Biol. Reprod. 78:282
    • (2008) Biol. Reprod , vol.78 , pp. 282
    • Extavour, C.G.M.1    Wilkins, A.S.2
  • 52
    • 28944434614 scopus 로고    scopus 로고
    • Genome phylogenies indicate a meaningful α-proteobacterial phylogeny and support a grouping of the mitochondria with the Rickettsiales
    • Fitzpatrick DA, Creevey CJ, McInerney JO. 2006. Genome phylogenies indicate a meaningful α-proteobacterial phylogeny and support a grouping of the mitochondria with the Rickettsiales. Mol. Biol. Evol. 23:74-85
    • (2006) Mol. Biol. Evol , vol.23 , pp. 74-85
    • Fitzpatrick, D.A.1    Creevey, C.J.2    McInerney, J.O.3
  • 53
    • 0036021692 scopus 로고    scopus 로고
    • Jam packed genomes: A preliminary, comparative analysis of nucleomorphs
    • Gilson PR, McFadden GI. 2002. Jam packed genomes: a preliminary, comparative analysis of nucleomorphs. Genetica 115:13-28
    • (2002) Genetica , vol.115 , pp. 13-28
    • Gilson, P.R.1    McFadden, G.I.2
  • 54
    • 0031287397 scopus 로고    scopus 로고
    • Gametogenesis and the antiquity of reproductive pattern in the Foraminiferida
    • Goldstein ST. 1997. Gametogenesis and the antiquity of reproductive pattern in the Foraminiferida. J. Foraminifer. Res. 27:319-28
    • (1997) J. Foraminifer. Res , vol.27 , pp. 319-328
    • Goldstein, S.T.1
  • 56
    • 0037388327 scopus 로고    scopus 로고
    • The Mesozoic radiation of eukaryotic algae: The portable plastid hypothesis
    • Grzebyk D, Schofield O, Vetriani C, Falkowski PG. 2003. The Mesozoic radiation of eukaryotic algae: the portable plastid hypothesis. J. Phycol. 39:259-67
    • (2003) J. Phycol , vol.39 , pp. 259-267
    • Grzebyk, D.1    Schofield, O.2    Vetriani, C.3    Falkowski, P.G.4
  • 57
    • 34547754024 scopus 로고    scopus 로고
    • Phylogenomic analysis supports the monophyly of cryptophytes and haptophytes and the association of 'Rhizaria' with Chromalveolates
    • Hackett JD, Yoon HS, Li S, Reyes-Prieto A, R̈ummele SE, Bhattacharya D. 2007. Phylogenomic analysis supports the monophyly of cryptophytes and haptophytes and the association of 'Rhizaria' with Chromalveolates. Mol. Biol. Evol. 24:1702-13
    • (2007) Mol. Biol. Evol , vol.24 , pp. 1702-1713
    • Hackett, J.D.1    Yoon, H.S.2    Li, S.3    Reyes-Prieto, A.4    R̈ummele, S.E.5    Bhattacharya, D.6
  • 58
    • 33747887707 scopus 로고    scopus 로고
    • Mitochondria, hydrogenosomes and mitosomes: Products of evolutionary tinkering! Curr
    • Hackstein JHP, Tjaden J, Huynen M. 2006. Mitochondria, hydrogenosomes and mitosomes: products of evolutionary tinkering! Curr. Genet. 50:225-45
    • (2006) Genet , vol.50 , pp. 225-245
    • Hackstein, J.H.P.1    Tjaden, J.2    Huynen, M.3
  • 59
    • 62649113993 scopus 로고    scopus 로고
    • Phylogenomic analyses support the monophyly of 'Excavata' and resolve relationships among eukaryotic "supergroups"
    • Hampl V, Hug L, Leigh JW, Dacks JB, Lang BF, et al. 2009. Phylogenomic analyses support the monophyly of 'Excavata' and resolve relationships among eukaryotic "supergroups". Proc. Natl. Acad. Sci. USA 106:3859-64
    • (2009) Proc. Natl. Acad. Sci. USA , vol.106 , pp. 3859-3864
    • Hampl, V.1    Hug, L.2    Leigh, J.W.3    Dacks, J.B.4    Lang, B.F.5
  • 60
    • 79955715343 scopus 로고    scopus 로고
    • The evolution of adaptive immunity in vertebrates
    • Hirano M, Das S, Guo P, Cooper MD. 2011. The evolution of adaptive immunity in vertebrates. Adv. Immunol. 109:125-57
    • (2011) Adv. Immunol , vol.109 , pp. 125-157
    • Hirano, M.1    Das, S.2    Guo, P.3    Cooper, M.D.4
  • 63
    • 74549210085 scopus 로고    scopus 로고
    • Phylogenetic distributions and histories of proteins involved in anaerobic pyruvate metabolism in eukaryotes
    • Hug LA, Stechmann A, Roger AJ. 2010. Phylogenetic distributions and histories of proteins involved in anaerobic pyruvate metabolism in eukaryotes. Mol. Biol. Evol. 27:311-24
    • (2010) Mol. Biol. Evol , vol.27 , pp. 311-324
    • Hug, L.A.1    Stechmann, A.2    Roger, A.J.3
  • 64
    • 52049110120 scopus 로고    scopus 로고
    • The chloroplast protein translocation complexes of Chlamydomonas reinhardtii: A bioinformatic comparison of Toc and Tic components in plants, green algae and red algae
    • Kalanon M, McFadden GI. 2008. The chloroplast protein translocation complexes of Chlamydomonas reinhardtii: a bioinformatic comparison of Toc and Tic components in plants, green algae and red algae. Genetics 179:95-112
    • (2008) Genetics , vol.179 , pp. 95-112
    • Kalanon, M.1    McFadden, G.I.2
  • 65
    • 0034915592 scopus 로고    scopus 로고
    • Evolution of nuclear dualism in ciliates: A reanalysis in light of recent molecular data
    • Katz LA. 2001. Evolution of nuclear dualism in ciliates: a reanalysis in light of recent molecular data. Int. J. Syst. Evol. Microbiol. 51:1587-92
    • (2001) Int. J. Syst. Evol. Microbiol , vol.51 , pp. 1587-1592
    • Katz, L.A.1
  • 66
    • 0036739501 scopus 로고    scopus 로고
    • Lateral gene transfers and the evolution of eukaryotes: Theories and data
    • Katz LA. 2002. Lateral gene transfers and the evolution of eukaryotes: theories and data. Int. J. Syst. Evol. Microbiol. 52:1893-900
    • (2002) Int. J. Syst. Evol. Microbiol , vol.52 , pp. 1893-1900
    • Katz, L.A.1
  • 67
    • 84862884930 scopus 로고    scopus 로고
    • Turning the crown upside down: Gene tree parsimony roots the eukaryotic tree of life
    • doi: 10. 1093/sysbio/sys026
    • Katz LA, Grant JR, Parfrey LW, Burleigh JG. 2012. Turning the crown upside down: gene tree parsimony roots the eukaryotic tree of life. Syst. Biol. doi: 10. 1093/sysbio/sys026
    • (2012) Syst. Biol
    • Katz, L.A.1    Grant, J.R.2    Parfrey, L.W.3    Burleigh, J.G.4
  • 69
    • 47649104484 scopus 로고    scopus 로고
    • Horizontal gene transfer in eukaryotic evolution
    • Keeling PJ, Palmer JD. 2008. Horizontal gene transfer in eukaryotic evolution. Nat. Rev. Genet. 9:605-18
    • (2008) Nat. Rev. Genet , vol.9 , pp. 605-618
    • Keeling, P.J.1    Palmer, J.D.2
  • 70
    • 77955039174 scopus 로고    scopus 로고
    • The origin and early evolution of eukaryotes in the light of phylogenomics
    • Koonin EV. 2010. The origin and early evolution of eukaryotes in the light of phylogenomics. Genome Biol. 11:209
    • (2010) Genome Biol , vol.11 , pp. 209
    • Koonin, E.V.1
  • 72
    • 79960855196 scopus 로고    scopus 로고
    • Comprehensive phylogenetic reconstruction of 'Amoebozoa' based on concatenated analyses of SSU-rDNA and actin genes
    • Lahr DJG, Grant J, Nguyen T, Lin JH, Katz LA. 2011. Comprehensive phylogenetic reconstruction of 'Amoebozoa' based on concatenated analyses of SSU-rDNA and actin genes. PLoS One 6:e22780
    • (2011) PLoS One , vol.6
    • Lahr, D.J.G.1    Grant, J.2    Nguyen, T.3    Lin, J.H.4    Katz, L.A.5
  • 73
    • 43049085945 scopus 로고    scopus 로고
    • The eukaryotic tree of life: Endosymbiosis takes its TOL
    • Lane CE, Archibald JM. 2008. The eukaryotic tree of life: endosymbiosis takes its TOL. Trends Ecol. Evol. 23:268-75
    • (2008) Trends Ecol. Evol , vol.23 , pp. 268-275
    • Lane, C.E.1    Archibald, J.M.2
  • 74
    • 84988044805 scopus 로고    scopus 로고
    • The energetics of genome complexity
    • Lane N, Martin W. 2010. The energetics of genome complexity. Nature 467:929-34
    • (2010) Nature , vol.467 , pp. 929-934
    • Lane, N.1    Martin, W.2
  • 76
    • 73049092972 scopus 로고    scopus 로고
    • Molecular analyses reveal high levels of eukaryotic richness associated with enigmatic deep-sea protists (Komokiacea)
    • Lecroq B, Gooday AJ, Cedhagen T, Sabbatini A, Pawlowski J. 2009. Molecular analyses reveal high levels of eukaryotic richness associated with enigmatic deep-sea protists (Komokiacea). Mar. Biodiv. 39:45-55
    • (2009) Mar. Biodiv , vol.39 , pp. 45-55
    • Lecroq, B.1    Gooday, A.J.2    Cedhagen, T.3    Sabbatini, A.4    Pawlowski, J.5
  • 78
    • 0030035039 scopus 로고    scopus 로고
    • Archaeal-eubacterial mergers in the origin of Eukarya: Phylogenetic classification of life
    • Margulis L. 1996. Archaeal-eubacterial mergers in the origin of Eukarya: phylogenetic classification of life. Proc. Natl. Acad. Sci. USA 93:1071-76
    • (1996) Proc. Natl. Acad. Sci. USA , vol.93 , pp. 1071-1076
    • Margulis, L.1
  • 79
    • 0034691073 scopus 로고    scopus 로고
    • The chimeric eukaryote: Origin of the nucleus from the karyomastigont in amitochondriate protists
    • Margulis L, Dolan MF, Guerrero R. 2000. The chimeric eukaryote: origin of the nucleus from the karyomastigont in amitochondriate protists. Proc. Natl. Acad. Sci. USA 97:6954-59
    • (2000) Proc. Natl. Acad. Sci. USA , vol.97 , pp. 6954-6959
    • Margulis, L.1    Dolan, M.F.2    Guerrero, R.3
  • 81
    • 27844490046 scopus 로고    scopus 로고
    • Archaebacteria (Archaea) and the origin of the eukaryotic nucleus
    • Martin W. 2005. Archaebacteria (Archaea) and the origin of the eukaryotic nucleus. Curr. Opin. Microbiol. 8:630-37
    • (2005) Curr. Opin. Microbiol , vol.8 , pp. 630-637
    • Martin, W.1
  • 82
    • 33644783626 scopus 로고    scopus 로고
    • Introns and the origin of nucleus-cytosol compartmentalization
    • Martin W, Koonin EV. 2006. Introns and the origin of nucleus-cytosol compartmentalization. Nature 440:41-45
    • (2006) Nature , vol.440 , pp. 41-45
    • Martin, W.1    Koonin, E.V.2
  • 83
    • 2642689666 scopus 로고    scopus 로고
    • The hydrogen hypothesis for the first eukaryote
    • Martin W, M̈ uller M. 1998. The hydrogen hypothesis for the first eukaryote. Nature 392:37-41
    • (1998) Nature , vol.392 , pp. 37-41
    • Martin, W.1    M̈uller, M.2
  • 86
    • 0025732410 scopus 로고
    • Chromatin diminution and chromosome elimination in four Japanese hagfish species
    • Nakai Y, Kubota S, Kohno S. 1991. Chromatin diminution and chromosome elimination in four Japanese hagfish species. Cytogenet. Cell Genet. 56:196-98
    • (1991) Cytogenet. Cell Genet , vol.56 , pp. 196-198
    • Nakai, Y.1    Kubota, S.2    Kohno, S.3
  • 87
    • 0025922871 scopus 로고
    • On the evolution of the karyorelict ciliate life cycle: Heterophasic ciliates and the origin of ciliate binary fission
    • Orias E. 1991. On the evolution of the karyorelict ciliate life cycle: heterophasic ciliates and the origin of ciliate binary fission. Biosystems 25:67-73
    • (1991) Biosystems , vol.25 , pp. 67-73
    • Orias, E.1
  • 90
    • 84863834982 scopus 로고    scopus 로고
    • Ribosomal DNA is differentially amplified across life cycle stages in the foraminifer Allogromia laticollaris strain CSH
    • In press
    • Parfrey LW, Grant JR, Katz LA. 2012. Ribosomal DNA is differentially amplified across life cycle stages in the foraminifer Allogromia laticollaris strain CSH. J. Foraminifer. Res. In press
    • (2012) J. Foraminifer. Res
    • Parfrey, L.W.1    Grant, J.R.2    Katz, L.A.3
  • 91
    • 77950357483 scopus 로고    scopus 로고
    • Dynamic genomes of eukaryotes and the maintenance of genomic integrity
    • Parfrey LW, Katz LA. 2010. Dynamic genomes of eukaryotes and the maintenance of genomic integrity. Microbe 5:156-64
    • (2010) Microbe , vol.5 , pp. 156-164
    • Parfrey, L.W.1    Katz, L.A.2
  • 93
    • 80052019696 scopus 로고    scopus 로고
    • Estimating the timing of early eukaryotic diversification with multigene molecular clocks Proc
    • Parfrey LW, Lahr DJG, Knoll AH, Katz LA. 2011. Estimating the timing of early eukaryotic diversification with multigene molecular clocks Proc. Natl. Acad. Sci. USA 108:13624-29
    • (2011) Natl. Acad. Sci. USA , vol.108 , pp. 13624-13629
    • Parfrey, L.W.1    Lahr, D.J.G.2    Knoll, A.H.3    Katz, L.A.4
  • 94
    • 0032744297 scopus 로고    scopus 로고
    • The diversity of eukaryotes
    • Patterson DJ. 1999. The diversity of eukaryotes. Am. Nat. 154:S96-124
    • (1999) Am. Nat , vol.154
    • Patterson, D.J.1
  • 95
    • 69449088461 scopus 로고    scopus 로고
    • The twilight of Sarcodina: A molecular perspective on the polyphyletic origin of amoeboid protists
    • Pawlowski J. 2008. The twilight of Sarcodina: a molecular perspective on the polyphyletic origin of amoeboid protists. Protistology 5:281-302
    • (2008) Protistology , vol.5 , pp. 281-302
    • Pawlowski, J.1
  • 96
    • 4544313053 scopus 로고    scopus 로고
    • The ring of life provides evidence for a genome fusion origin of eukaryotes
    • Rivera MC, Lake JA. 2004. The ring of life provides evidence for a genome fusion origin of eukaryotes. Nature 431:152-55
    • (2004) Nature , vol.431 , pp. 152-155
    • Rivera, M.C.1    Lake, J.A.2
  • 98
    • 0032702602 scopus 로고    scopus 로고
    • Reconstructing early events in eukaryotic evolution
    • Roger AJ. 1999. Reconstructing early events in eukaryotic evolution. Am. Nat. 154:S146-63
    • (1999) Am. Nat , vol.154
    • Roger, A.J.1
  • 99
    • 33747798028 scopus 로고    scopus 로고
    • The origin and diversification of eukaryotes: Problems with molecular phylogenetics and molecular clock estimation
    • Roger AJ, Hug LA. 2006. The origin and diversification of eukaryotes: problems with molecular phylogenetics and molecular clock estimation. Philos. Trans. R. Soc. Lond. B 361:1039-54
    • (2006) Philos. Trans. R. Soc. Lond B , vol.361 , pp. 1039-1054
    • Roger, A.J.1    Hug, L.A.2
  • 100
    • 67651124996 scopus 로고    scopus 로고
    • Splicing in the eukaryotic ancestor: Form, function and dysfunction
    • Roy SW, Irimia M. 2009. Splicing in the eukaryotic ancestor: form, function and dysfunction. Trends Ecol. Evol. 24:447-55
    • (2009) Trends Ecol. Evol , vol.24 , pp. 447-455
    • Roy, S.W.1    Irimia, M.2
  • 102
    • 34447271967 scopus 로고    scopus 로고
    • Sortingwheat from chaff inmulti-gene analyses of chlorophyll c-containing plastids
    • Sanchez-PuertaMV, Bachvaroff TR, Delwiche CF. 2007. Sortingwheat from chaff inmulti-gene analyses of chlorophyll c-containing plastids. Mol. Phylogenet. Evol. 44:885-97
    • (2007) Mol. Phylogenet. Evol , vol.44 , pp. 885-897
    • Sanchez-Puerta, M.V.1    Bachvaroff, T.R.2    Delwiche, C.F.3
  • 104
    • 51449085579 scopus 로고    scopus 로고
    • Origins and evolution of eukaryotic RNA interference
    • Shabalina SA, Koonin EV. 2008. Origins and evolution of eukaryotic RNA interference. Trends Ecol. Evol. 23:578-87
    • (2008) Trends Ecol. Evol , vol.23 , pp. 578-587
    • Shabalina, S.A.1    Koonin, E.V.2
  • 105
    • 77957955710 scopus 로고    scopus 로고
    • Mitochondrion-related organelles in eukaryotic protists
    • Shiflett AM, Johnson PJ. 2010. Mitochondrion-related organelles in eukaryotic protists. Annu. Rev. Microbiol. 64:409-29
    • (2010) Annu. Rev. Microbiol , vol.64 , pp. 409-429
    • Shiflett, A.M.1    Johnson, P.J.2
  • 106
    • 0345328163 scopus 로고    scopus 로고
    • Cytoskeletal organization, phylogenetic affinities and systematics in the contentious taxon 'Excavata' (Eukaryota)
    • Simpson AGB. 2003. Cytoskeletal organization, phylogenetic affinities and systematics in the contentious taxon 'Excavata' (Eukaryota). Int. J. Syst. Evol. Microbiol. 53:1759-77
    • (2003) Int. J. Syst. Evol. Microbiol , vol.53 , pp. 1759-1777
    • Simpson, A.G.B.1
  • 107
    • 0033619980 scopus 로고    scopus 로고
    • The ultrastructure of Carpediemonas membranifera (Eukaryota) with reference to the "excavate hypothesis"
    • Simpson AGB, Patterson DJ. 1999. The ultrastructure of Carpediemonas membranifera (Eukaryota) with reference to the "Excavate hypothesis". Eur. J. Protistol. 35:353-70
    • (1999) Eur. J. Protistol , vol.35 , pp. 353-370
    • Simpson, A.G.B.1    Patterson, D.J.2
  • 108
    • 12544255323 scopus 로고    scopus 로고
    • The real 'kingdoms' of eukaryotes
    • Simpson AGB, Roger AJ. 2004. The real 'kingdoms' of eukaryotes. Curr. Biol. 14:R693-96
    • (2004) Curr. Biol , vol.14
    • Simpson, A.G.B.1    Roger, A.J.2
  • 109
    • 0024962760 scopus 로고
    • Phylogenetic meaning of the kingdom concept: An unusual ribosomal RNA from the Giardia lamblia
    • Sogin ML, Gunderson JH, Eldwood HJ, Alonso RA, Peattie DA. 1989. Phylogenetic meaning of the kingdom concept: an unusual ribosomal RNA from the Giardia lamblia. Science 243:75-67
    • (1989) Science , vol.243 , pp. 75-67
    • Sogin, M.L.1    Gunderson, J.H.2    Eldwood, H.J.3    Alonso, R.A.4    Peattie, D.A.5
  • 110
    • 0037025197 scopus 로고    scopus 로고
    • Rooting the eukaryote tree by using a derived gene fusion
    • Stechmann A, Cavalier-Smith T. 2002. Rooting the eukaryote tree by using a derived gene fusion. Science 297:89-91
    • (2002) Science , vol.297 , pp. 89-91
    • Stechmann, A.1    Cavalier-Smith, T.2
  • 111
    • 0041955201 scopus 로고    scopus 로고
    • Phylogenetic analysis of eukaryotes using heat-shock protein Hsp90
    • Stechmann A, Cavalier-Smith T. 2003. Phylogenetic analysis of eukaryotes using heat-shock protein Hsp90. J. Mol. Evol. 57:408-19
    • (2003) J. Mol. Evol , vol.57 , pp. 408-419
    • Stechmann, A.1    Cavalier-Smith, T.2
  • 113
    • 78449299224 scopus 로고    scopus 로고
    • Mosaic origin of the mitochondrial proteome
    • Szklarczyk R, Huynen MA. 2010. Mosaic origin of the mitochondrial proteome. Proteomics 10:4012-24
    • (2010) Proteomics , vol.10 , pp. 4012-4024
    • Szklarczyk, R.1    Huynen, M.A.2
  • 115
    • 33751017069 scopus 로고    scopus 로고
    • Switching trypanosome coats: What's in the wardrobe?
    • Taylor JE, Rudenko G. 2006. Switching trypanosome coats: What's in the wardrobe? Trends Genet. 22:614-20
    • (2006) Trends Genet , vol.22 , pp. 614-620
    • Taylor, J.E.1    Rudenko, G.2
  • 116
    • 68949157157 scopus 로고    scopus 로고
    • Molecular data are transforming hypotheses on the origin and diversification of eukaryotes
    • Tekle YI, Parfrey LW, Katz LA. 2009. Molecular data are transforming hypotheses on the origin and diversification of eukaryotes. Bioscience 59:471-81
    • (2009) Bioscience , vol.59 , pp. 471-481
    • Tekle, Y.I.1    Parfrey, L.W.2    Katz, L.A.3
  • 117
    • 84862562185 scopus 로고    scopus 로고
    • An evolutionary network of genes present in the eukaryote commonancestor polls genomes on eukaryotic and mitochondrial origin
    • Thiergart T, Landan G, Schenk M, Dagan T, Martin WF. 2012. An evolutionary network of genes present in the eukaryote commonancestor polls genomes on eukaryotic and mitochondrial origin. Genome Biol. Evol. 4:466-85
    • (2012) Genome Biol. Evol , vol.4 , pp. 466-485
    • Thiergart, T.1    Landan, G.2    Schenk, M.3    Dagan, T.4    Martin, W.F.5
  • 118
    • 0031436828 scopus 로고    scopus 로고
    • Evolutionary relationships among the eukaryotic crown taxa taking into account site-to-site variation in 18S rRNA
    • Van de Peer Y, De Wachter R. 1997. Evolutionary relationships among the eukaryotic crown taxa taking into account site-to-site variation in 18S rRNA. J. Mol. Evol. 45:619-30
    • (1997) J. Mol. Evol , vol.45 , pp. 619-630
    • Van De Peer, Y.1    De Wachter, R.2
  • 119
    • 82455208960 scopus 로고    scopus 로고
    • The falsifiability of the models for the origin of eukaryotes
    • Vesteg M, Krajcovic J. 2011. The falsifiability of the models for the origin of eukaryotes. Curr. Genet. 57:367-90
    • (2011) Curr. Genet , vol.57 , pp. 367-390
    • Vesteg, M.1    Krajcovic, J.2
  • 120
    • 0027241482 scopus 로고
    • Monophyletic origins of the Metazoa: An evolutionary link with fungi
    • Wainright PO, Hinkle G, Sogin ML, Stickel SK. 1993. Monophyletic origins of the Metazoa: an evolutionary link with fungi. Science 260:340-42
    • (1993) Science , vol.260 , pp. 340-342
    • Wainright, P.O.1    Hinkle, G.2    Sogin, M.L.3    Stickel, S.K.4
  • 121
    • 0014669335 scopus 로고
    • New concepts of kingdoms of organisms
    • Whittaker RH. 1969. New concepts of kingdoms of organisms. Science 163:150-60
    • (1969) Science , vol.163 , pp. 150-160
    • Whittaker, R.H.1
  • 122
    • 0017956171 scopus 로고
    • Protist classification and the kingdoms of organisms
    • WhittakerRH, Margulis L. 1978. Protist classification and the kingdoms of organisms. Biosystems 10:3-18
    • (1978) Biosystems , vol.10 , pp. 3-18
    • Whittaker, R.H.1    Margulis, L.2
  • 123
    • 80052614055 scopus 로고    scopus 로고
    • The evolution of the cytoskeleton
    • Wickstead B, Gull K. 2011. The evolution of the cytoskeleton. J. Cell Biol. 194:513-25
    • (2011) J. Cell Biol , vol.194 , pp. 513-525
    • Wickstead, B.1    Gull, K.2
  • 124
    • 0001271789 scopus 로고
    • Phylogenetic structure of the prokaryotic domain: The primary kingdoms
    • Woese CR, Fox GE. 1977. Phylogenetic structure of the prokaryotic domain: the primary kingdoms. Proc. Natl. Acad. Sci. USA 74:5088-90
    • (1977) Proc. Natl. Acad. Sci. USA , vol.74 , pp. 5088-5090
    • Woese, C.R.1    Fox, G.E.2
  • 125
    • 0025300402 scopus 로고
    • Towards a natural system of organisms: Proposal for the domains Archaea, Bacteria, and Eucarya
    • Woese CR, Kandler O, Wheelis ML. 1990. Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya. Proc. Natl. Acad. Sci. USA 87:4576-79
    • (1990) Proc. Natl. Acad. Sci. USA , vol.87 , pp. 4576-4579
    • Woese, C.R.1    Kandler, O.2    Wheelis, M.L.3
  • 128
    • 27844458601 scopus 로고    scopus 로고
    • Evolution of developmentally regulated genome rearrangements in eukaryotes
    • Zufall RA, Robinson T, Katz LA. 2005. Evolution of developmentally regulated genome rearrangements in eukaryotes. J. Exp. Zool. Part B 304B:448-55
    • (2005) J. Exp. Zool. Part B , vol.304 B , pp. 448-455
    • Zufall, R.A.1    Robinson, T.2    Katz, L.A.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.