-
1
-
-
0026049422
-
Activation of the Pseudomonas TOL plasmid upper pathway operon. Identification of binding sites for the positive regulator XylR and for integration host factor protein
-
Abril, M.A., Buck, M., and Ramos, J.L. (1991) Activation of the Pseudomonas TOL plasmid upper pathway operon. Identification of binding sites for the positive regulator XylR and for integration host factor protein. J Biol Chem 266: 15832-15838.
-
(1991)
J Biol Chem
, vol.266
, pp. 15832-15838
-
-
Abril, M.A.1
Buck, M.2
Ramos, J.L.3
-
2
-
-
0032716841
-
Growth phase-dependent variation in protein composition of the Escherichia coli nucleoid
-
Ali Azam, T., Iwata, A., Nishimura, A., Ueda, S., and Ishihama, A. (1999) Growth phase-dependent variation in protein composition of the Escherichia coli nucleoid. J Bacteriol 181: 6361-6370.
-
(1999)
J Bacteriol
, vol.181
, pp. 6361-6370
-
-
Ali Azam, T.1
Iwata, A.2
Nishimura, A.3
Ueda, S.4
Ishihama, A.5
-
3
-
-
0034703060
-
Global gene expression profiling in Escherichia coli K12. The effects of integration host factor
-
Arfin, S.M., Long, A.D., Ito, E.T., Tolleri, L., Riehle, M.M., Paegle, E.S., and Hatfield, G.W. (2000) Global gene expression profiling in Escherichia coli K12. The effects of integration host factor. J Biol Chem 275: 29672-29684.
-
(2000)
J Biol Chem
, vol.275
, pp. 29672-29684
-
-
Arfin, S.M.1
Long, A.D.2
Ito, E.T.3
Tolleri, L.4
Riehle, M.M.5
Paegle, E.S.6
Hatfield, G.W.7
-
4
-
-
10344229939
-
Structure and function of the Pseudomonas putida integration host factor
-
Calb, R., Davidovitch, A., Koby, S., Giladi, H., Goldenberg, D., Margalit, H., etal. (1996) Structure and function of the Pseudomonas putida integration host factor. J Bacteriol 178: 6319-6326.
-
(1996)
J Bacteriol
, vol.178
, pp. 6319-6326
-
-
Calb, R.1
Davidovitch, A.2
Koby, S.3
Giladi, H.4
Goldenberg, D.5
Margalit, H.6
-
5
-
-
0035863067
-
The black cat/white cat principle of signal integration in bacterial promoters
-
Cases, I., and de Lorenzo, V. (2001) The black cat/white cat principle of signal integration in bacterial promoters. EMBO J 20: 1-11.
-
(2001)
EMBO J
, vol.20
, pp. 1-11
-
-
Cases, I.1
de Lorenzo, V.2
-
6
-
-
0036267257
-
The genomes of Pseudomonas encode a third HU protein
-
Cases, I., and de Lorenzo, V. (2002) The genomes of Pseudomonas encode a third HU protein. Microbiology 148: 1243-1245.
-
(2002)
Microbiology
, vol.148
, pp. 1243-1245
-
-
Cases, I.1
de Lorenzo, V.2
-
7
-
-
41549126717
-
A set of activators and repressors control peripheral glucose pathways in Pseudomonas putida to yield a common central intermediate
-
del Castillo, T., Duque, E., and Ramos, J.L. (2008) A set of activators and repressors control peripheral glucose pathways in Pseudomonas putida to yield a common central intermediate. J Bacteriol 190: 2331-2339.
-
(2008)
J Bacteriol
, vol.190
, pp. 2331-2339
-
-
del Castillo, T.1
Duque, E.2
Ramos, J.L.3
-
8
-
-
36549035342
-
Alginate production by Pseudomonas putida creates a hydrated microenvironment and contributes to biofilm architecture and stress tolerance under water-limiting conditions
-
Chang, W.S., van de Mortel, M., Nielsen, L., Nino de Guzman, G., Li, X., and Halverson, L.J. (2007) Alginate production by Pseudomonas putida creates a hydrated microenvironment and contributes to biofilm architecture and stress tolerance under water-limiting conditions. J Bacteriol 189: 8290-8299.
-
(2007)
J Bacteriol
, vol.189
, pp. 8290-8299
-
-
Chang, W.S.1
van de Mortel, M.2
Nielsen, L.3
Nino de Guzman, G.4
Li, X.5
Halverson, L.J.6
-
9
-
-
69249147800
-
Regulation of glucose metabolism in Pseudomonas: the phosphorylative branch and Entner-Doudoroff enzymes are regulated by a repressor containing a sugar isomerase domain
-
Daddaoua, A., Krell, T., and Ramos, J.L. (2009) Regulation of glucose metabolism in Pseudomonas: the phosphorylative branch and Entner-Doudoroff enzymes are regulated by a repressor containing a sugar isomerase domain. J Biol Chem 284: 21360-21368.
-
(2009)
J Biol Chem
, vol.284
, pp. 21360-21368
-
-
Daddaoua, A.1
Krell, T.2
Ramos, J.L.3
-
10
-
-
77956515962
-
Compartmentalized glucose metabolism in Pseudomonas putida is controlled by the PtxS repressor
-
Daddaoua, A., Krell, T., Alfonso, C., Morel, B., and Ramos, J.L. (2010) Compartmentalized glucose metabolism in Pseudomonas putida is controlled by the PtxS repressor. J Bacteriol 192: 4357-4366.
-
(2010)
J Bacteriol
, vol.192
, pp. 4357-4366
-
-
Daddaoua, A.1
Krell, T.2
Alfonso, C.3
Morel, B.4
Ramos, J.L.5
-
11
-
-
18444369954
-
The role of nucleoid-associated proteins in the organization and compaction of bacterial chromatin
-
Dame, R.T. (2005) The role of nucleoid-associated proteins in the organization and compaction of bacterial chromatin. Mol Microbiol 56: 858-870.
-
(2005)
Mol Microbiol
, vol.56
, pp. 858-870
-
-
Dame, R.T.1
-
12
-
-
0034233268
-
GC-MS analysis of amino acids rapidly provides rich information for isotopomer balancing
-
Dauner, M., and Sauer, U. (2000) GC-MS analysis of amino acids rapidly provides rich information for isotopomer balancing. Biotechnol Prog 16: 642-649.
-
(2000)
Biotechnol Prog
, vol.16
, pp. 642-649
-
-
Dauner, M.1
Sauer, U.2
-
13
-
-
0028307609
-
Growth phase variation of integration host factor level in Escherichia coli
-
Ditto, M.D., Roberts, D., and Weisberg, R.A. (1994) Growth phase variation of integration host factor level in Escherichia coli. J Bacteriol 176: 3738-3748.
-
(1994)
J Bacteriol
, vol.176
, pp. 3738-3748
-
-
Ditto, M.D.1
Roberts, D.2
Weisberg, R.A.3
-
14
-
-
60649108870
-
Nucleoid-associated proteins and bacterial physiology
-
Dorman, C.J. (2009) Nucleoid-associated proteins and bacterial physiology. Adv Appl Microbiol 67: 47-64.
-
(2009)
Adv Appl Microbiol
, vol.67
, pp. 47-64
-
-
Dorman, C.J.1
-
15
-
-
0037381650
-
Regulation of gene expression by histone-like proteins in bacteria
-
Dorman, C.J., and Deighan, P. (2003) Regulation of gene expression by histone-like proteins in bacteria. Curr Opin Genet Dev 13: 179-184.
-
(2003)
Curr Opin Genet Dev
, vol.13
, pp. 179-184
-
-
Dorman, C.J.1
Deighan, P.2
-
16
-
-
0031568786
-
A good turn for DNA: the structure of integration host factor bound to DNA
-
Ellenberger, T., and Landy, A. (1997) A good turn for DNA: the structure of integration host factor bound to DNA. Structure 5: 153-157.
-
(1997)
Structure
, vol.5
, pp. 153-157
-
-
Ellenberger, T.1
Landy, A.2
-
17
-
-
0031756354
-
Maximal transcriptional activation by the IHF protein of Escherichia coli depends on optimal DNA bending by the activator
-
Engelhorn, M., and Geiselmann, J. (1998) Maximal transcriptional activation by the IHF protein of Escherichia coli depends on optimal DNA bending by the activator. Mol Microbiol 30: 431-441.
-
(1998)
Mol Microbiol
, vol.30
, pp. 431-441
-
-
Engelhorn, M.1
Geiselmann, J.2
-
18
-
-
77951125481
-
Tradeoff between enzyme and metabolite efficiency maintains metabolic homeostasis upon perturbations in enzyme capacity
-
Fendt, S.M., Buescher, J.M., Rudroff, F., Picotti, P., Zamboni, N., and Sauer, U. (2010) Tradeoff between enzyme and metabolite efficiency maintains metabolic homeostasis upon perturbations in enzyme capacity. Mol Syst Biol 6: 356.
-
(2010)
Mol Syst Biol
, vol.6
, pp. 356
-
-
Fendt, S.M.1
Buescher, J.M.2
Rudroff, F.3
Picotti, P.4
Zamboni, N.5
Sauer, U.6
-
19
-
-
0037335931
-
Metabolic flux profiling of Escherichia coli mutants in central carbon metabolism using GC-MS
-
Fischer, E., and Sauer, U. (2003) Metabolic flux profiling of Escherichia coli mutants in central carbon metabolism using GC-MS. Eur J Biochem 270: 880-891.
-
(2003)
Eur J Biochem
, vol.270
, pp. 880-891
-
-
Fischer, E.1
Sauer, U.2
-
20
-
-
14244256095
-
Experimental identification and quantification of glucose metabolism in seven bacterial species
-
Fuhrer, T., Fischer, E., and Sauer, U. (2005) Experimental identification and quantification of glucose metabolism in seven bacterial species. J Bacteriol 187: 1581-1590.
-
(2005)
J Bacteriol
, vol.187
, pp. 1581-1590
-
-
Fuhrer, T.1
Fischer, E.2
Sauer, U.3
-
21
-
-
77954835737
-
Passing the baton between laps: adhesion and cohesion in Pseudomonas putida biofilms
-
Fuqua, C. (2010) Passing the baton between laps: adhesion and cohesion in Pseudomonas putida biofilms. Mol Microbiol 77: 533-536.
-
(2010)
Mol Microbiol
, vol.77
, pp. 533-536
-
-
Fuqua, C.1
-
22
-
-
0036933239
-
Complete sequence of the IncP-9 TOL plasmid pWW0 from Pseudomonas putida
-
Greated, A., Lambertsen, L., Williams, P.A., and Thomas, C.M. (2002) Complete sequence of the IncP-9 TOL plasmid pWW0 from Pseudomonas putida. Environ Microbiol 4: 856-871.
-
(2002)
Environ Microbiol
, vol.4
, pp. 856-871
-
-
Greated, A.1
Lambertsen, L.2
Williams, P.A.3
Thomas, C.M.4
-
23
-
-
0026009168
-
Genes coding for integration host factor are conserved in Gram-negative bacteria
-
Haluzi, H., Goitein, D., Koby, S., Mendelson, I., Teff, D., Mengeritsky, G., etal. (1991) Genes coding for integration host factor are conserved in Gram-negative bacteria. J Bacteriol 173: 6297-6299.
-
(1991)
J Bacteriol
, vol.173
, pp. 6297-6299
-
-
Haluzi, H.1
Goitein, D.2
Koby, S.3
Mendelson, I.4
Teff, D.5
Mengeritsky, G.6
-
24
-
-
0031058129
-
An operon containing fumC and sodA encoding fumarase C and manganese superoxide dismutase is controlled by the ferric uptake regulator in Pseudomonas aeruginosa: fur mutants produce elevated alginate levels
-
Hassett, D.J., Howell, M.L., Ochsner, U.A., Vasil, M.L., Johnson, Z., and Dean, G.E. (1997a) An operon containing fumC and sodA encoding fumarase C and manganese superoxide dismutase is controlled by the ferric uptake regulator in Pseudomonas aeruginosa: fur mutants produce elevated alginate levels. J Bacteriol 179: 1452-1459.
-
(1997)
J Bacteriol
, vol.179
, pp. 1452-1459
-
-
Hassett, D.J.1
Howell, M.L.2
Ochsner, U.A.3
Vasil, M.L.4
Johnson, Z.5
Dean, G.E.6
-
25
-
-
0031039076
-
Fumarase C activity is elevated in response to iron deprivation and in mucoid, alginate-producing Pseudomonas aeruginosa: cloning and characterization of fumC and purification of native FumC
-
Hassett, D.J., Howell, M.L., Sokol, P.A., Vasil, M.L., and Dean, G.E. (1997b) Fumarase C activity is elevated in response to iron deprivation and in mucoid, alginate-producing Pseudomonas aeruginosa: cloning and characterization of fumC and purification of native FumC. J Bacteriol 179: 1442-1451.
-
(1997)
J Bacteriol
, vol.179
, pp. 1442-1451
-
-
Hassett, D.J.1
Howell, M.L.2
Sokol, P.A.3
Vasil, M.L.4
Dean, G.E.5
-
27
-
-
0025047590
-
Transposon vectors containing non-antibiotic resistance selection markers for cloning and stable chromosomal insertion of foreign genes in gram-negative bacteria
-
Herrero, M., de Lorenzo, V., and Timmis, K.N. (1990) Transposon vectors containing non-antibiotic resistance selection markers for cloning and stable chromosomal insertion of foreign genes in gram-negative bacteria. J Bacteriol 172: 6557-6567.
-
(1990)
J Bacteriol
, vol.172
, pp. 6557-6567
-
-
Herrero, M.1
de Lorenzo, V.2
Timmis, K.N.3
-
28
-
-
0042065283
-
Transition from reversible to irreversible attachment during biofilm formation by Pseudomonas fluorescens WCS365 requires an ABC transporter and a large secreted protein
-
Hinsa, S.M., Espinosa-Urgel, M., Ramos, J.L., and O'Toole, G.A. (2003) Transition from reversible to irreversible attachment during biofilm formation by Pseudomonas fluorescens WCS365 requires an ABC transporter and a large secreted protein. Mol Microbiol 49: 905-918.
-
(2003)
Mol Microbiol
, vol.49
, pp. 905-918
-
-
Hinsa, S.M.1
Espinosa-Urgel, M.2
Ramos, J.L.3
O'Toole, G.A.4
-
29
-
-
0026572610
-
Upstream binding sequences of the XylR activator protein and integration host factor in the xylS gene promoter region of the Pseudomonas TOL plasmid
-
Holtel, A., Timmis, K.N., and Ramos, J.L. (1992) Upstream binding sequences of the XylR activator protein and integration host factor in the xylS gene promoter region of the Pseudomonas TOL plasmid. Nucleic Acids Res 20: 1755-1762.
-
(1992)
Nucleic Acids Res
, vol.20
, pp. 1755-1762
-
-
Holtel, A.1
Timmis, K.N.2
Ramos, J.L.3
-
30
-
-
0032464363
-
Expression of the transposase gene tnpA of Tn4652 is positively affected by integration host factor
-
Horak, R., and Kivisaar, M. (1998) Expression of the transposase gene tnpA of Tn4652 is positively affected by integration host factor. J Bacteriol 180: 2822-2829.
-
(1998)
J Bacteriol
, vol.180
, pp. 2822-2829
-
-
Horak, R.1
Kivisaar, M.2
-
31
-
-
1642442680
-
IHF is the limiting host factor in transposition of Pseudomonas putida transposon Tn4652 in stationary phase
-
Ilves, H., Horak, R., Teras, R., and Kivisaar, M. (2004) IHF is the limiting host factor in transposition of Pseudomonas putida transposon Tn4652 in stationary phase. Mol Microbiol 51: 1773-1785.
-
(2004)
Mol Microbiol
, vol.51
, pp. 1773-1785
-
-
Ilves, H.1
Horak, R.2
Teras, R.3
Kivisaar, M.4
-
32
-
-
42249098422
-
Evolvability and hierarchy in rewired bacterial gene networks
-
Isalan, M., Lemerle, C., Michalodimitrakis, K., Horn, C., Beltrao, P., Raineri, E., etal. (2008) Evolvability and hierarchy in rewired bacterial gene networks. Nature 452: 840-845.
-
(2008)
Nature
, vol.452
, pp. 840-845
-
-
Isalan, M.1
Lemerle, C.2
Michalodimitrakis, K.3
Horn, C.4
Beltrao, P.5
Raineri, E.6
-
33
-
-
77949385752
-
Bacterial adaptation through distributed sensing of metabolic fluxes
-
Kotte, O., Zaugg, J.B., and Heinemann, M. (2010) Bacterial adaptation through distributed sensing of metabolic fluxes. Mol Syst Biol 6: 355.
-
(2010)
Mol Syst Biol
, vol.6
, pp. 355
-
-
Kotte, O.1
Zaugg, J.B.2
Heinemann, M.3
-
34
-
-
0028358260
-
Analysis and construction of stable phenotypes in Gram-negative bacteria with Tn5- and Tn10-derived minitransposons
-
de Lorenzo, V., and Timmis, K.N. (1994) Analysis and construction of stable phenotypes in Gram-negative bacteria with Tn5- and Tn10-derived minitransposons. Methods Enzymol 235: 386-405.
-
(1994)
Methods Enzymol
, vol.235
, pp. 386-405
-
-
de Lorenzo, V.1
Timmis, K.N.2
-
35
-
-
0025195680
-
Mini-Tn5 transposon derivatives for insertion mutagenesis, promoter probing, and chromosomal insertion of cloned DNA in Gram-negative eubacteria
-
de Lorenzo, V., Herrero, M., Jakubzik, U., and Timmis, K.N. (1990) Mini-Tn5 transposon derivatives for insertion mutagenesis, promoter probing, and chromosomal insertion of cloned DNA in Gram-negative eubacteria. J Bacteriol 172: 6568-6572.
-
(1990)
J Bacteriol
, vol.172
, pp. 6568-6572
-
-
de Lorenzo, V.1
Herrero, M.2
Jakubzik, U.3
Timmis, K.N.4
-
36
-
-
0025797356
-
An upstream XylR- and IHF-induced nucleoprotein complex regulates the sigma 54-dependent Pu promoter of TOL plasmid
-
de Lorenzo, V., Herrero, M., Metzke, M., and Timmis, K.N. (1991) An upstream XylR- and IHF-induced nucleoprotein complex regulates the sigma 54-dependent Pu promoter of TOL plasmid. EMBO J 10: 1159-1167.
-
(1991)
EMBO J
, vol.10
, pp. 1159-1167
-
-
de Lorenzo, V.1
Herrero, M.2
Metzke, M.3
Timmis, K.N.4
-
37
-
-
18044367581
-
ppGpp: a global regulator in Escherichia coli
-
Magnusson, L.U., Farewell, A., and Nystrom, T. (2005) ppGpp: a global regulator in Escherichia coli. Trends Microbiol 13: 236-242.
-
(2005)
Trends Microbiol
, vol.13
, pp. 236-242
-
-
Magnusson, L.U.1
Farewell, A.2
Nystrom, T.3
-
38
-
-
31844431848
-
The integration host factor integrates stationary-phase and virulence gene expression in Salmonella enterica serovar Typhimurium
-
Mangan, M.W., Lucchini, S., Danino, V., Cróinín, T.O., Hinton, J.C., and Dorman, C.J. (2006) The integration host factor integrates stationary-phase and virulence gene expression in Salmonella enterica serovar Typhimurium. Mol Microbiol 59: 1831-1847.
-
(2006)
Mol Microbiol
, vol.59
, pp. 1831-1847
-
-
Mangan, M.W.1
Lucchini, S.2
Danino, V.3
Cróinín, T.O.4
Hinton, J.C.5
Dorman, C.J.6
-
39
-
-
0242386460
-
Identifying global regulators in transcriptional regulatory networks in bacteria
-
Martinez-Antonio, A., and Collado-Vides, J. (2003) Identifying global regulators in transcriptional regulatory networks in bacteria. Curr Opin Microbiol 6: 482-489.
-
(2003)
Curr Opin Microbiol
, vol.6
, pp. 482-489
-
-
Martinez-Antonio, A.1
Collado-Vides, J.2
-
40
-
-
77954843913
-
LapF, the second largest Pseudomonas putida protein, contributes to plant root colonization and determines biofilm architecture
-
Martinez-Gil, M., Yousef-Coronado, F., and Espinosa-Urgel, M. (2010) LapF, the second largest Pseudomonas putida protein, contributes to plant root colonization and determines biofilm architecture. Mol Microbiol 77: 549-561.
-
(2010)
Mol Microbiol
, vol.77
, pp. 549-561
-
-
Martinez-Gil, M.1
Yousef-Coronado, F.2
Espinosa-Urgel, M.3
-
41
-
-
79551504187
-
Regulatory exaptation of the catabolite repression protein (Crp)-cAMP system in Pseudomonas putida
-
Milanesio, P., Arce-Rodriguez, A., Munoz, A., Calles, B., and de Lorenzo, V. (2011) Regulatory exaptation of the catabolite repression protein (Crp)-cAMP system in Pseudomonas putida. Environ Microbiol 13: 324-339.
-
(2011)
Environ Microbiol
, vol.13
, pp. 324-339
-
-
Milanesio, P.1
Arce-Rodriguez, A.2
Munoz, A.3
Calles, B.4
de Lorenzo, V.5
-
43
-
-
9644310554
-
Pyrroloquinoline-quinone: a reactive oxygen species scavenger in bacteria
-
Misra, H.S., Khairnar, N.P., Barik, A., Priyadarsini, K., Mohan, H., and Apte, S.K. (2004) Pyrroloquinoline-quinone: a reactive oxygen species scavenger in bacteria. FEBS Lett 578: 26-30.
-
(2004)
FEBS Lett
, vol.578
, pp. 26-30
-
-
Misra, H.S.1
Khairnar, N.P.2
Barik, A.3
Priyadarsini, K.4
Mohan, H.5
Apte, S.K.6
-
44
-
-
84857236226
-
Extreme DNA bending: molecular basis of the regulatory breadth of IHF
-
Dame, R.T., and Dorman, C.J. (eds). Heidelberg: Springer
-
Muñoz, A., Valls, M., and de Lorenzo, V. (2010) Extreme DNA bending: molecular basis of the regulatory breadth of IHF. In Bacterial Chromatin. Dame, R.T., and Dorman, C.J. (eds). Heidelberg: Springer, pp. 365-393.
-
(2010)
Bacterial Chromatin
, pp. 365-393
-
-
Muñoz, A.1
Valls, M.2
de Lorenzo, V.3
-
45
-
-
34447502083
-
13C-experiments and gas chromatography-mass spectrometry data: protocol and principles
-
13C-experiments and gas chromatography-mass spectrometry data: protocol and principles. Methods Mol Biol 358: 177-197.
-
(2007)
Methods Mol Biol
, vol.358
, pp. 177-197
-
-
Nanchen, A.1
Fuhrer, T.2
Sauer, U.3
-
46
-
-
0036933705
-
Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440
-
Nelson, K.E., Weinel, C., Paulsen, I.T., Dodson, R.J., Hilbert, H., Martins dos Santos, V.A., etal. (2002) Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440. Environ Microbiol 4: 799-808.
-
(2002)
Environ Microbiol
, vol.4
, pp. 799-808
-
-
Nelson, K.E.1
Weinel, C.2
Paulsen, I.T.3
Dodson, R.J.4
Hilbert, H.5
Martins dos Santos, V.A.6
-
47
-
-
54449092307
-
A genome-scale metabolic reconstruction of Pseudomonas putida KT2440: iJN746 as a cell factory
-
Nogales, J., Palsson, B.O., and Thiele, I. (2008) A genome-scale metabolic reconstruction of Pseudomonas putida KT2440: iJN746 as a cell factory. BMC Syst Biol 2: 79.
-
(2008)
BMC Syst Biol
, vol.2
, pp. 79
-
-
Nogales, J.1
Palsson, B.O.2
Thiele, I.3
-
48
-
-
0031724115
-
Flagellar and twitching motility are necessary for Pseudomonas aeruginosa biofilm development
-
O'Toole, G.A., and Kolter, R. (1998a) Flagellar and twitching motility are necessary for Pseudomonas aeruginosa biofilm development. Mol Microbiol 30: 295-304.
-
(1998)
Mol Microbiol
, vol.30
, pp. 295-304
-
-
O'Toole, G.A.1
Kolter, R.2
-
49
-
-
0031970701
-
Initiation of biofilm formation in Pseudomonas fluorescens WCS365 proceeds via multiple, convergent signalling pathways: a genetic analysis
-
O'Toole, G.A., and Kolter, R. (1998b) Initiation of biofilm formation in Pseudomonas fluorescens WCS365 proceeds via multiple, convergent signalling pathways: a genetic analysis. Mol Microbiol 28: 449-461.
-
(1998)
Mol Microbiol
, vol.28
, pp. 449-461
-
-
O'Toole, G.A.1
Kolter, R.2
-
50
-
-
0030798605
-
Clues and consequences of DNA bending in transcription
-
Pérez-Martín, J., and de Lorenzo, V. (1997) Clues and consequences of DNA bending in transcription. Annu Rev Microbiol 51: 593-628.
-
(1997)
Annu Rev Microbiol
, vol.51
, pp. 593-628
-
-
Pérez-Martín, J.1
de Lorenzo, V.2
-
51
-
-
0031754332
-
Genetic analysis of Escherichia coli biofilm formation: roles of flagella, motility, chemotaxis and type I pili
-
Pratt, L.A., and Kolter, R. (1998) Genetic analysis of Escherichia coli biofilm formation: roles of flagella, motility, chemotaxis and type I pili. Mol Microbiol 30: 285-293.
-
(1998)
Mol Microbiol
, vol.30
, pp. 285-293
-
-
Pratt, L.A.1
Kolter, R.2
-
52
-
-
55449096123
-
Genome-scale reconstruction and analysis of the Pseudomonas putida KT2440 metabolic network facilitates applications in biotechnology
-
Puchalka, J., Oberhardt, M.A., Godinho, M., Bielecka, A., Regenhardt, D., Timmis, K.N., etal. (2008) Genome-scale reconstruction and analysis of the Pseudomonas putida KT2440 metabolic network facilitates applications in biotechnology. PLoS Comput Biol 4: e1000210.
-
(2008)
PLoS Comput Biol
, vol.4
-
-
Puchalka, J.1
Oberhardt, M.A.2
Godinho, M.3
Bielecka, A.4
Regenhardt, D.5
Timmis, K.N.6
-
53
-
-
0030860391
-
Transcriptional control of the Pseudomonas TOL plasmid catabolic operons is achieved through an interplay of host factors and plasmid-encoded regulators
-
Ramos, J.L., Marques, S., and Timmis, K.N. (1997) Transcriptional control of the Pseudomonas TOL plasmid catabolic operons is achieved through an interplay of host factors and plasmid-encoded regulators. Annu Rev Microbiol 51: 341-373.
-
(1997)
Annu Rev Microbiol
, vol.51
, pp. 341-373
-
-
Ramos, J.L.1
Marques, S.2
Timmis, K.N.3
-
54
-
-
73449088005
-
Identification of genes regulated by the MvaT-like paralogues TurA and TurB of Pseudomonas putida KT2440
-
Renzi, F., Rescalli, E., Galli, E., and Bertoni, G. (2010) Identification of genes regulated by the MvaT-like paralogues TurA and TurB of Pseudomonas putida KT2440. Environ Microbiol 12: 254-263.
-
(2010)
Environ Microbiol
, vol.12
, pp. 254-263
-
-
Renzi, F.1
Rescalli, E.2
Galli, E.3
Bertoni, G.4
-
55
-
-
0030451819
-
Crystal structure of an IHF-DNA complex: a protein-induced DNA U-turn
-
Rice, P.A., Yang, S., Mizuuchi, K., and Nash, H.A. (1996) Crystal structure of an IHF-DNA complex: a protein-induced DNA U-turn. Cell 87: 1295-1306.
-
(1996)
Cell
, vol.87
, pp. 1295-1306
-
-
Rice, P.A.1
Yang, S.2
Mizuuchi, K.3
Nash, H.A.4
-
56
-
-
0003903343
-
-
New York, USA: Cold Spring Harbor Laboratory Press.
-
Sambrook, J., Fritsch, E.F., and Maniatis, T. (1989) Molecular Cloning: A Laboratory Manual. New York, USA: Cold Spring Harbor Laboratory Press.
-
(1989)
Molecular Cloning: A Laboratory Manual
-
-
Sambrook, J.1
Fritsch, E.F.2
Maniatis, T.3
-
57
-
-
84871929425
-
-
Desarrollo de herramientas moleculares para el análisis genético y la generación de nuevos fenotipos en Pseudomonas. Doctoral Thesis. Autonomous University of Madrid, p.
-
Sánchez-Romero, J.M. (1997) Desarrollo de herramientas moleculares para el análisis genético y la generación de nuevos fenotipos en Pseudomonas. Doctoral Thesis. Autonomous University of Madrid, p. 44.
-
(1997)
, pp. 44
-
-
Sánchez-Romero, J.M.1
-
58
-
-
80054033830
-
A composite feed-forward loop I4-FFL involving IHF and Crc stabilizes expression of the XylR regulator of Pseudomonas putida mt-2 from growth phase perturbations
-
Silva-Rocha, R., and de Lorenzo, V. (2011) A composite feed-forward loop I4-FFL involving IHF and Crc stabilizes expression of the XylR regulator of Pseudomonas putida mt-2 from growth phase perturbations. Mol Biosyst 7: 2982-2990.
-
(2011)
Mol Biosyst
, vol.7
, pp. 2982-2990
-
-
Silva-Rocha, R.1
de Lorenzo, V.2
-
59
-
-
4544341015
-
Linear models and empirical bayes methods for assessing differential expression in microarray experiments
-
Article 3
-
Smyth, G.K. (2004) Linear models and empirical bayes methods for assessing differential expression in microarray experiments. Stat Appl Genet Mol Biol 3: Article3.
-
(2004)
Stat Appl Genet Mol Biol
, vol.3
-
-
Smyth, G.K.1
-
60
-
-
0242333835
-
Normalization of cDNA microarray data
-
Smyth, G.K., and Speed, T. (2003) Normalization of cDNA microarray data. Methods 31: 265-273.
-
(2003)
Methods
, vol.31
, pp. 265-273
-
-
Smyth, G.K.1
Speed, T.2
-
61
-
-
0033954732
-
Transcription from fusion promoters generated during transposition of transposon Tn4652 is positively affected by integration host factor in Pseudomonas putida
-
Teras, R., Horak, R., and Kivisaar, M. (2000) Transcription from fusion promoters generated during transposition of transposon Tn4652 is positively affected by integration host factor in Pseudomonas putida. J Bacteriol 182: 589-598.
-
(2000)
J Bacteriol
, vol.182
, pp. 589-598
-
-
Teras, R.1
Horak, R.2
Kivisaar, M.3
-
62
-
-
0035077729
-
Genome organisation and chromatin structure in Escherichia coli
-
Ussery, D., Larsen, T.S., Wilkes, K.T., Friis, C., Worning, P., Krogh, A., and Brunak, S. (2001) Genome organisation and chromatin structure in Escherichia coli. Biochimie 83: 201-212.
-
(2001)
Biochimie
, vol.83
, pp. 201-212
-
-
Ussery, D.1
Larsen, T.S.2
Wilkes, K.T.3
Friis, C.4
Worning, P.5
Krogh, A.6
Brunak, S.7
-
63
-
-
0037127286
-
In vivo UV laser footprinting of the Pseudomonas putida sigma 54 Pu promoter reveals that integration host factor couples transcriptional activity to growth phase
-
Valls, M., Buckle, M., and de Lorenzo, V. (2002) In vivo UV laser footprinting of the Pseudomonas putida sigma 54 Pu promoter reveals that integration host factor couples transcriptional activity to growth phase. J Biol Chem 277: 2169-2175.
-
(2002)
J Biol Chem
, vol.277
, pp. 2169-2175
-
-
Valls, M.1
Buckle, M.2
de Lorenzo, V.3
-
64
-
-
80054840299
-
Functional analysis of the integration host factor site of the sigma 54 Pu promoter of Pseudomonas putida by in vivo UV imprinting
-
Valls, M., Silva-Rocha, R., Cases, I., Munoz, A., and de Lorenzo, V. (2011) Functional analysis of the integration host factor site of the sigma 54 Pu promoter of Pseudomonas putida by in vivo UV imprinting. Mol Microbiol 82: 591-601.
-
(2011)
Mol Microbiol
, vol.82
, pp. 591-601
-
-
Valls, M.1
Silva-Rocha, R.2
Cases, I.3
Munoz, A.4
de Lorenzo, V.5
-
65
-
-
0036937356
-
Global features of the Pseudomonas putida KT2440 genome sequence
-
Weinel, C., Nelson, K.E., and Tummler, B. (2002) Global features of the Pseudomonas putida KT2440 genome sequence. Environ Microbiol 4: 809-818.
-
(2002)
Environ Microbiol
, vol.4
, pp. 809-818
-
-
Weinel, C.1
Nelson, K.E.2
Tummler, B.3
-
66
-
-
0016197816
-
Metabolism of benzoate and the methylbenzoates by Pseudomonas putida (arvilla) mt-2: evidence for the existence of a TOL plasmid
-
Williams, P.A., and Murray, K. (1974) Metabolism of benzoate and the methylbenzoates by Pseudomonas putida (arvilla) mt-2: evidence for the existence of a TOL plasmid. J Bacteriol 120: 416-423.
-
(1974)
J Bacteriol
, vol.120
, pp. 416-423
-
-
Williams, P.A.1
Murray, K.2
-
67
-
-
0016593935
-
Metabolism of toluene and xylenes by Pseudomonas putida (arvilla) mt-2: evidence for a new function of the TOL plasmid
-
Worsey, M.J., and Williams, P.A. (1975) Metabolism of toluene and xylenes by Pseudomonas putida (arvilla) mt-2: evidence for a new function of the TOL plasmid. J Bacteriol 124: 7-13.
-
(1975)
J Bacteriol
, vol.124
, pp. 7-13
-
-
Worsey, M.J.1
Williams, P.A.2
-
68
-
-
52649091370
-
Different, overlapping mechanisms for colonization of abiotic and plant surfaces by Pseudomonas putida
-
Yousef-Coronado, F., Travieso, M.L., and Espinosa-Urgel, M. (2008) Different, overlapping mechanisms for colonization of abiotic and plant surfaces by Pseudomonas putida. FEMS Microbiol Lett 288: 118-124.
-
(2008)
FEMS Microbiol Lett
, vol.288
, pp. 118-124
-
-
Yousef-Coronado, F.1
Travieso, M.L.2
Espinosa-Urgel, M.3
-
69
-
-
33644952730
-
Growth phase-dependent expression of the Pseudomonas putida KT2440 transcriptional machinery analysed with a genome-wide DNA microarray
-
Yuste, L., Hervas, A.B., Canosa, I., Tobes, R., Jimenez, J.I., Nogales, J., etal. (2006) Growth phase-dependent expression of the Pseudomonas putida KT2440 transcriptional machinery analysed with a genome-wide DNA microarray. Environ Microbiol 8: 165-177.
-
(2006)
Environ Microbiol
, vol.8
, pp. 165-177
-
-
Yuste, L.1
Hervas, A.B.2
Canosa, I.3
Tobes, R.4
Jimenez, J.I.5
Nogales, J.6
-
71
-
-
46049083393
-
Involvement of a novel efflux system in biofilm-specific resistance to antibiotics
-
Zhang, L., and Mah, T.F. (2008) Involvement of a novel efflux system in biofilm-specific resistance to antibiotics. J Bacteriol 190: 4447-4452.
-
(2008)
J Bacteriol
, vol.190
, pp. 4447-4452
-
-
Zhang, L.1
Mah, T.F.2
-
72
-
-
23444458457
-
The HimA and HimD subunits of integration host factor can specifically bind to DNA as homodimers
-
Zulianello, L., de la Gorgue de Rosny, E., van Ulsen, P., van de Putte, P., and Goosen, N. (1994) The HimA and HimD subunits of integration host factor can specifically bind to DNA as homodimers. EMBO J 13: 1534-1540.
-
(1994)
EMBO J
, vol.13
, pp. 1534-1540
-
-
Zulianello, L.1
de la Gorgue de Rosny, E.2
van Ulsen, P.3
van de Putte, P.4
Goosen, N.5
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