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Volumn 6, Issue , 2010, Pages

Bacterial adaptation through distributed sensing of metabolic fluxes

Author keywords

Computational model; Metabolism; Regulation; Sensing; Systems biology

Indexed keywords

CARBON; TRANSCRIPTION FACTOR;

EID: 77949385752     PISSN: 17444292     EISSN: 17444292     Source Type: Journal    
DOI: 10.1038/msb.2010.10     Document Type: Article
Times cited : (203)

References (35)
  • 1
    • 20344379457 scopus 로고    scopus 로고
    • Topological units of environmental signal processing in the transcriptional regulatory network of Escherichia coli
    • Balázsi G, Barabási AL, Oltvai ZN (2005) Topological units of environmental signal processing in the transcriptional regulatory network of Escherichia coli. Proc Natl Acad Sci USA 102: 7841-7846
    • (2005) Proc Natl Acad Sci USA , vol.102 , pp. 7841-7846
    • Balázsi, G.1    Barabási, A.L.2    Oltvai, Z.N.3
  • 3
    • 34948909644 scopus 로고    scopus 로고
    • Correlation between growth rates, EIIACrr phosphorylation, and intracellular cyclic AMP levels in Escherichia coli K-12
    • Bettenbrock K, Sauter T, Jahreis K, Kremling A, Lengeler JW, Gilles E-D (2007) Correlation between growth rates, EIIACrr phosphorylation, and intracellular cyclic AMP levels in Escherichia coli K-12. J Bacteriol 189: 6891-6900
    • (2007) J Bacteriol , vol.189 , pp. 6891-6900
    • Bettenbrock, K.1    Sauter, T.2    Jahreis, K.3    Kremling, A.4    Lengeler, J.W.5    Gilles, E.-D.6
  • 4
    • 0141941680 scopus 로고    scopus 로고
    • Making informed decisions: Regulatory interactions between two-component systems
    • Bijlsma JJ, Groisman EA (2003) Making informed decisions: regulatory interactions between two-component systems. Trends Microbiol 11: 359-366
    • (2003) Trends Microbiol , vol.11 , pp. 359-366
    • Bijlsma, J.J.1    Groisman, E.A.2
  • 6
    • 27144517984 scopus 로고    scopus 로고
    • Interlinked fast and slow positive feedback loops drive reliable cell decisions
    • Brandman O, Ferrell Jr JE, Li R, Meyer T (2005) Interlinked fast and slow positive feedback loops drive reliable cell decisions. Science 310: 496-498
    • (2005) Science , vol.310 , pp. 496-498
    • Brandman, O.1    Ferrell Jr, J.E.2    Li, R.3    Meyer, T.4
  • 7
    • 84913559202 scopus 로고    scopus 로고
    • Modulation of chemical composition and other parameters of the cell at different exponential growth rates
    • Böck A et al (eds). Module 5.2.3. Washington DC: ASM Press
    • Bremer H, Dennis PP (2008) Modulation of chemical composition and other parameters of the cell at different exponential growth rates. In EcoSal\Escherichia coli and Salmonella: Cellular and Molecular Biology, Böck A et al (eds). Module 5.2.3. Washington DC: ASM Press
    • (2008) In EcoSal\Escherichia Coli and Salmonella: Cellular and Molecular Biology
    • Bremer, H.1    Dennis, P.P.2
  • 10
    • 2342648924 scopus 로고    scopus 로고
    • Integrating high-throughput and computational data elucidates bacterial networks
    • Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO (2004) Integrating high-throughput and computational data elucidates bacterial networks. Nature 429: 92-96
    • (2004) Nature , vol.429 , pp. 92-96
    • Covert, M.W.1    Knight, E.M.2    Reed, J.L.3    Herrgard, M.J.4    Palsson, B.O.5
  • 13
    • 36749095093 scopus 로고    scopus 로고
    • Coordination logic of the sensing machinery in the transcriptional regulatory network of Escherichia coli
    • Janga SC, Salgado H, Martinez-Antonio A, Collado-Vides J (2007) Coordination logic of the sensing machinery in the transcriptional regulatory network of Escherichia coli. Nucleic Acids Res 35: 6963-6972
    • (2007) Nucleic Acids Res , vol.35 , pp. 6963-6972
    • Janga, S.C.1    Salgado, H.2    Martinez-Antonio, A.3    Collado-Vides, J.4
  • 15
    • 0036500993 scopus 로고    scopus 로고
    • Systems biology: A brief overview
    • Kitano H (2002a) Systems biology: a brief overview. Science 295: 1662-1664
    • (2002) Science , vol.295 , pp. 1662-1664
    • Kitano, H.1
  • 16
    • 0037079054 scopus 로고    scopus 로고
    • Computational systems biology
    • Kitano H (2002b) Computational systems biology. Nature 420: 206-210
    • (2002) Nature , vol.420 , pp. 206-210
    • Kitano, H.1
  • 17
    • 60149094488 scopus 로고    scopus 로고
    • A divide-and-conquer approach to analyze underdetermined biochemical models
    • Kotte O, Heinemann M (2009) A divide-and-conquer approach to analyze underdetermined biochemical models. Bioinformatics 25: 519-525
    • (2009) Bioinformatics , vol.25 , pp. 519-525
    • Kotte, O.1    Heinemann, M.2
  • 18
    • 40049093544 scopus 로고    scopus 로고
    • A feed-forward loop guarantees robust behavior in Escherichia coli carbohydrate uptake
    • Kremling A, Bettenbrock K, Gilles ED (2008) A feed-forward loop guarantees robust behavior in Escherichia coli carbohydrate uptake. Bioinformatics 24: 704-710
    • (2008) Bioinformatics , vol.24 , pp. 704-710
    • Kremling, A.1    Bettenbrock, K.2    Gilles, E.D.3
  • 19
    • 38049188050 scopus 로고    scopus 로고
    • Combinatorics of feedback in cellular uptake and metabolism of small molecules
    • Krishna S, Semsey S, Sneppen K (2007) Combinatorics of feedback in cellular uptake and metabolism of small molecules. Proc Natl Acad Sci USA 104: 20815-20819
    • (2007) Proc Natl Acad Sci USA , vol.104 , pp. 20815-20819
    • Krishna, S.1    Semsey, S.2    Sneppen, K.3
  • 20
    • 0021741048 scopus 로고
    • The branch point effect. Ultrasensitivity and subsensitivity to metabolic control
    • LaPorte DC, Walsh K, Koshland Jr DE (1984) The branch point effect. Ultrasensitivity and subsensitivity to metabolic control. J Biol Chem 259: 14068-14075
    • (1984) J Biol Chem , vol.259 , pp. 14068-14075
    • Laporte, D.C.1    Walsh, K.2    Koshland Jr, D.E.3
  • 22
    • 0015147278 scopus 로고
    • The effect of carbon and nitrogen sources on the level of metabolic intermediates in Escherichia coli
    • Lowry OH, Carter J, Ward JB, Glaser L (1971) The effect of carbon and nitrogen sources on the level of metabolic intermediates in Escherichia coli. J Biol Chem 246: 6511-6521
    • (1971) J Biol Chem , vol.246 , pp. 6511-6521
    • Lowry, O.H.1    Carter, J.2    Ward, J.B.3    Glaser, L.4
  • 23
    • 30344484891 scopus 로고    scopus 로고
    • Internal-sensing machinery directs the activity of the regulatory network in Escherichia coli
    • Martinez-Antonio A, Janga SC, Salgado H, Collado-Vides J (2006) Internal-sensing machinery directs the activity of the regulatory network in Escherichia coli. Trends Microbiol 14: 22-27
    • (2006) Trends Microbiol , vol.14 , pp. 22-27
    • Martinez-Antonio, A.1    Janga, S.C.2    Salgado, H.3    Collado-Vides, J.4
  • 24
    • 0037066717 scopus 로고    scopus 로고
    • Global expression profiling of acetate-grown Escherichia coli
    • Oh MK, Rohlin L, Kao KC, Liao JC (2002) Global expression profiling of acetate-grown Escherichia coli. J Biol Chem 277: 13175-13183
    • (2002) J Biol Chem , vol.277 , pp. 13175-13183
    • Oh, M.K.1    Rohlin, L.2    Kao, K.C.3    Liao, J.C.4
  • 26
    • 0036217950 scopus 로고    scopus 로고
    • Regulation of gene expression in the PTS in Escherichia coli: The role and interactions of Mlc
    • Plumbridge J (2002) Regulation of gene expression in the PTS in Escherichia coli: the role and interactions of Mlc. Curr Opin Microbiol 5: 187-193
    • (2002) Curr Opin Microbiol , vol.5 , pp. 187-193
    • Plumbridge, J.1
  • 27
    • 0028913511 scopus 로고
    • Purification, characterization and mode of action of PdhR, the transcriptional repressor of the pdhR-aceEF-lpd operon of Escherichia coli
    • Quail MA, Guest JR (1995) Purification, characterization and mode of action of PdhR, the transcriptional repressor of the pdhR-aceEF-lpd operon of Escherichia coli. Mol Microbiol 15: 519-529
    • (1995) Mol Microbiol , vol.15 , pp. 519-529
    • Quail, M.A.1    Guest, J.R.2
  • 28
    • 0027444619 scopus 로고
    • In vitro binding of the pleiotropic transcriptional regulatory protein, FruR, to the fru, pps, ace, pts and icd operons of Escherichia coli and Salmonella typhimurium
    • Ramseier TM, Negre D, Cortay JC, Scarabel M, Cozzone AJ, Saier Jr MH (1993) In vitro binding of the pleiotropic transcriptional regulatory protein, FruR, to the fru, pps, ace, pts and icd operons of Escherichia coli and Salmonella typhimurium. J Mol Biol 234: 28-44
    • (1993) J Mol Biol , vol.234 , pp. 28-44
    • Ramseier, T.M.1    Negre, D.2    Cortay, J.C.3    Scarabel, M.4    Cozzone, A.J.5    Saier Jr, M.H.6
  • 30
    • 17644375240 scopus 로고    scopus 로고
    • The PEP-pyruvate-oxaloacetate node as the switch point for carbon flux distribution in bacteria
    • Sauer U, Eikmanns BJ (2004) The PEP-pyruvate-oxaloacetate node as the switch point for carbon flux distribution in bacteria. FEMS Microbiol Rev 29: 765-794
    • (2004) FEMS Microbiol Rev , vol.29 , pp. 765-794
    • Sauer, U.1    Eikmanns, B.J.2
  • 31
    • 33748846417 scopus 로고    scopus 로고
    • Transcriptional regulatory networks in bacteria: From input signals to output responses
    • Seshasayee AS, Bertone P, Fraser GM, Luscombe NM (2006) Transcriptional regulatory networks in bacteria: from input signals to output responses. Curr Opin Microbiol 9: 511-519
    • (2006) Curr Opin Microbiol , vol.9 , pp. 511-519
    • Seshasayee, A.S.1    Bertone, P.2    Fraser, G.M.3    Luscombe, N.M.4
  • 32
    • 0036096732 scopus 로고    scopus 로고
    • The N terminus of the Escherichia coli transcription activator MalT is the domain of interaction with MalY
    • Schlegel A, Danot O, Richet E, Ferenci T, Boos W (2002) The N terminus of the Escherichia coli transcription activator MalT is the domain of interaction with MalY. J Bacteriol 184: 3069-3077
    • (2002) J Bacteriol , vol.184 , pp. 3069-3077
    • Schlegel, A.1    Danot, O.2    Richet, E.3    Ferenci, T.4    Boos, W.5
  • 33
    • 34247183123 scopus 로고    scopus 로고
    • A genome-scale computational study of the interplay between transcriptional regulation and metabolism
    • Shlomi T, Eisenberg Y, Sharan R, Ruppin E (2007) A genome-scale computational study of the interplay between transcriptional regulation and metabolism. Mol Syst Biol 3: 101
    • (2007) Mol Syst Biol , vol.3 , pp. 101
    • Shlomi, T.1    Eisenberg, Y.2    Sharan, R.3    Ruppin, E.4
  • 34
    • 62849127949 scopus 로고    scopus 로고
    • Dynamics of uptake and metabolism of small molecules in cellular response systems
    • Werner M, Semsey S, Sneppen K, Krishna S (2009) Dynamics of uptake and metabolism of small molecules in cellular response systems. PLoS One 4: e4923
    • (2009) PLoS One , vol.4
    • Werner, M.1    Semsey, S.2    Sneppen, K.3    Krishna, S.4
  • 35
    • 0037676107 scopus 로고    scopus 로고
    • Motifs, modules and games in bacteria
    • Wolf D, Arkin A (2003) Motifs, modules and games in bacteria. Curr Opin Microbiol 6: 125-134
    • (2003) Curr Opin Microbiol , vol.6 , pp. 125-134
    • Wolf, D.1    Arkin, A.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.