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Volumn 30, Issue 1, 2013, Pages 140-153

Whole-genome duplication and the functional diversification of teleost fish hemoglobins

Author keywords

convergent evolution; gene duplication; gene family evolution; genome duplication

Indexed keywords

HEMOGLOBIN; HEMOGLOBIN ALPHA CHAIN; HEMOGLOBIN BETA CHAIN;

EID: 84871836802     PISSN: 07374038     EISSN: 15371719     Source Type: Journal    
DOI: 10.1093/molbev/mss212     Document Type: Article
Times cited : (85)

References (110)
  • 2
    • 80051478843 scopus 로고    scopus 로고
    • Genome evolution and meiotic maps by massively parallel DNA sequencing: Spotted gar, an outgroup for the teleost genome duplication
    • Amores A, Catchen J, Ferrara A, Fontenot Q, Postlethwait JH. 2011. Genome evolution and meiotic maps by massively parallel DNA sequencing: spotted gar, an outgroup for the teleost genome duplication. Genetics 188:799-808.
    • (2011) Genetics , vol.188 , pp. 799-808
    • Amores, A.1    Catchen, J.2    Ferrara, A.3    Fontenot, Q.4    Postlethwait, J.H.5
  • 3
    • 0032573579 scopus 로고    scopus 로고
    • Zebrafish hox clusters and vertebrate genome evolution
    • 13 co-authors
    • Amores A, Force A, Yan YL, et al. (13 co-authors). 1998. Zebrafish hox clusters and vertebrate genome evolution. Science 282:1711-1714.
    • (1998) Science , vol.282 , pp. 1711-1714
    • Amores, A.1    Force, A.2    Yan, Y.L.3
  • 4
    • 78650648378 scopus 로고    scopus 로고
    • Old gene duplication facilitates origin and diversification of an innovative communication system-twice
    • Arnegard ME, Zwickl DJ, Lu Y, Zakon HH. 2010. Old gene duplication facilitates origin and diversification of an innovative communication system-twice. Proc Natl Acad Sci USA. 51:22172-221777.
    • (2010) Proc Natl Acad Sci USA , vol.51 , pp. 22172-221777
    • Arnegard, M.E.1    Zwickl, D.J.2    Lu, Y.3    Zakon, H.H.4
  • 5
    • 34249722584 scopus 로고    scopus 로고
    • Historical reconstructions of evolving physiological complexity: O2 secretion in the eye and swimbladder of fishes
    • Berenbrink M. 2007. Historical reconstructions of evolving physiological complexity: O2 secretion in the eye and swimbladder of fishes. J Exp Biol. 209:1641-1652.
    • (2007) J Exp Biol , vol.209 , pp. 1641-1652
    • Berenbrink, M.1
  • 6
    • 15244349241 scopus 로고    scopus 로고
    • Evolution of oxygen secretion in fishes and the emergence of a complex physiological system
    • Berenbrink M, Koldkjaer P, Kepp O, Cossins AR. 2005. Evolution of oxygen secretion in fishes and the emergence of a complex physiological system. Science 307:1752-1757.
    • (2005) Science , vol.307 , pp. 1752-1757
    • Berenbrink, M.1    Koldkjaer, P.2    Kepp, O.3    Cossins, A.R.4
  • 7
    • 70350724802 scopus 로고    scopus 로고
    • Atlantic cod (Gadus morhua) hemoglobin genes: Multiplicity and polymorphism
    • Borza T, Stone C, Gamperl AK, Bowman S. 2009. Atlantic cod (Gadus morhua) hemoglobin genes: multiplicity and polymorphism. BMC Genet. 10:51.
    • (2009) BMC Genet , vol.10 , pp. 51
    • Borza, T.1    Stone, C.2    Gamperl, A.K.3    Bowman, S.4
  • 8
    • 77951764763 scopus 로고    scopus 로고
    • Pigmentation pathway evolution after whole-genome duplication in fish
    • Braasch I, Brunet F, Volff J, Schartl M. 2009. Pigmentation pathway evolution after whole-genome duplication in fish. Genome Biol Evol. 1:479-493.
    • (2009) Genome Biol Evol , vol.1 , pp. 479-493
    • Braasch, I.1    Brunet, F.2    Volff, J.3    Schartl, M.4
  • 9
    • 33646885704 scopus 로고    scopus 로고
    • Asymmetric evolution in two fish-specifically duplicated receptor tyrosine kinase paralogons involved in teleost coloration
    • Braasch I, Salzburger W, Meyer A. 2006. Asymmetric evolution in two fish-specifically duplicated receptor tyrosine kinase paralogons involved in teleost coloration. Mol Biol Evol. 23:1192-1202.
    • (2006) Mol Biol Evol , vol.23 , pp. 1192-1202
    • Braasch, I.1    Salzburger, W.2    Meyer, A.3
  • 10
    • 34250182014 scopus 로고    scopus 로고
    • Evolution of pigment synthesis pathways by gene and genome duplication in fish
    • Braasch I, Schartl M, Volff J. 2007. Evolution of pigment synthesis pathways by gene and genome duplication in fish. BMC Evol Biol. 7:74.
    • (2007) BMC Evol Biol , vol.7 , pp. 74
    • Braasch, I.1    Schartl, M.2    Volff, J.3
  • 11
    • 62349112527 scopus 로고    scopus 로고
    • The endothelin system: Evolution of vertebrate-specific ligand-receptor interactions by three rounds of genome duplication
    • Braasch I, Volff J, Schartl M. 2009. The endothelin system: evolution of vertebrate-specific ligand-receptor interactions by three rounds of genome duplication. Mol Biol Evol. 26:783-799.
    • (2009) Mol Biol Evol , vol.26 , pp. 783-799
    • Braasch, I.1    Volff, J.2    Schartl, M.3
  • 12
    • 0037334410 scopus 로고    scopus 로고
    • Characterization of embryonic globin genes of the zebrafish
    • 13 co-authors
    • Brownlie A, Hersey C, Oates AC, et al. (13 co-authors). 2003. Characterization of embryonic globin genes of the zebrafish. Dev Biol. 255: 48-61.
    • (2003) Dev Biol , vol.255 , pp. 48-61
    • Brownlie, A.1    Hersey, C.2    Oates, A.C.3
  • 13
    • 0031586003 scopus 로고    scopus 로고
    • Prediction of complete gene structures in human genomic DNA
    • Burge C, Karlin S. 1997. Prediction of complete gene structures in human genomic DNA. J Mol Biol. 268:78-94.
    • (1997) J Mol Biol , vol.268 , pp. 78-94
    • Burge, C.1    Karlin, S.2
  • 15
    • 77955354748 scopus 로고    scopus 로고
    • Identification and characterization of full-length cDNAs in channel catfish (Ictalurus punctatus) and blue catfish (Ictalurus furcatus)
    • 11 co-authors
    • Chen F, Lee Y, Jiang Y, et al. (11 co-authors). 2010. Identification and characterization of full-length cDNAs in channel catfish (Ictalurus punctatus) and blue catfish (Ictalurus furcatus). PLoS One 5:e11546.
    • (2010) PLoS One , vol.5
    • Chen, F.1    Lee, Y.2    Jiang, Y.3
  • 16
    • 0030921939 scopus 로고    scopus 로고
    • Asymmetric hemoglobins, their thiol content, and blood glutathione of the scalloped hammerhead shark, Sphyrna lewini
    • Dafre AL, Reischl E. 1997. Asymmetric hemoglobins, their thiol content, and blood glutathione of the scalloped hammerhead shark, Sphyrna lewini. Comp Biochem Physiol B. 116:323-331.
    • (1997) Comp Biochem Physiol B , vol.116 , pp. 323-331
    • Dafre, A.L.1    Reischl, E.2
  • 19
    • 3042666256 scopus 로고    scopus 로고
    • Muscle: Multiple sequence alignment with high accuracy and high throughput
    • Edgar RC. 2004. Muscle: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32:1792-1797.
    • (2004) Nucleic Acids Res , vol.32 , pp. 1792-1797
    • Edgar, R.C.1
  • 20
    • 0030905324 scopus 로고    scopus 로고
    • The anodic hemoglobin of Anguilla anguilla.Molecular basis for allosteric effects in a root-effect hemoglobin
    • Fago A, Bendixen E, Malte H,Weber RE. 1997. The anodic hemoglobin of Anguilla anguilla.Molecular basis for allosteric effects in a root-effect hemoglobin. J Biol Chem. 272:15628-15635.
    • (1997) J Biol Chem , vol.272 , pp. 15628-15635
    • Fago, A.1    Bendixen, E.2    Malte Hweber, R.E.3
  • 21
    • 0029163616 scopus 로고
    • The cathodic hemoglobin of Anguilla anguilla. Amino acid sequence and oxygen equilibria of a reverse Bohr effect hemoglobin with high oxygen affinity and high phosphate sensitivity
    • Fago A, Carratore V, di Prisco G, Feuerlein RJ, Sottrup-Jensen L, Weber RE. 1995. The cathodic hemoglobin of Anguilla anguilla. Amino acid sequence and oxygen equilibria of a reverse Bohr effect hemoglobin with high oxygen affinity and high phosphate sensitivity. J Biol Chem. 270:18897-18902.
    • (1995) J Biol Chem , vol.270 , pp. 18897-18902
    • Fago, A.1    Carratore, V.2    Di Prisco, G.3    Feuerlein, R.J.4    Sottrup-Jensen, L.5    Weber, R.E.6
  • 22
    • 0035864919 scopus 로고    scopus 로고
    • Comparative genome analysis delimits a chromosomal domain and identifies key regulatory elements in the alpha globin cluster
    • 14 co-authors
    • Flint J, Tufarelli C, Peden J, et al. (14 co-authors). 2001. Comparative genome analysis delimits a chromosomal domain and identifies key regulatory elements in the alpha globin cluster. Hum Mol Genet. 10: 371-382.
    • (2001) Hum Mol Genet , vol.10 , pp. 371-382
    • Flint, J.1    Tufarelli, C.2    Peden, J.3
  • 23
    • 32944462917 scopus 로고    scopus 로고
    • The amphibian globin gene repertoire as revealed by the Xenopus genome
    • Fuchs C, Burmester T, Hankeln T. 2006. The amphibian globin gene repertoire as revealed by the Xenopus genome. Cytogenet Genome Res. 112:296-306.
    • (2006) Cytogenet Genome Res , vol.112 , pp. 296-306
    • Fuchs, C.1    Burmester, T.2    Hankeln, T.3
  • 24
    • 0016440814 scopus 로고
    • Elasmobranch hemoglobins: Dimerization and polymerization in various species
    • Fyhn UEH, Sullivan B. 1975. Elasmobranch hemoglobins: dimerization and polymerization in various species. Comp Biochem Physiol. 50: 119-129.
    • (1975) Comp Biochem Physiol , vol.50 , pp. 119-129
    • Ueh, F.1    Sullivan, B.2
  • 25
    • 0029916816 scopus 로고    scopus 로고
    • Multiple hemoglobins in the electric ray: Torpedo marmorata
    • Galderisi U, Fucci L, Garaci G. 1996. Multiple hemoglobins in the electric ray: Torpedo marmorata. Comp Biochem Physiol B. 113:645-651.
    • (1996) Comp Biochem Physiol B , vol.113 , pp. 645-651
    • Galderisi, U.1    Fucci, L.2    Garaci, G.3
  • 26
    • 0038107364 scopus 로고    scopus 로고
    • Functional and comparative analysis of globin loci in pufferfish and humans
    • 12 co-authors
    • Gillemans N, McMorrow T, Tewari R, et al. (12 co-authors). 2003. Functional and comparative analysis of globin loci in pufferfish and humans. Blood 101:2842-2849.
    • (2003) Blood , vol.101 , pp. 2842-2849
    • Gillemans, N.1    McMorrow, T.2    Tewari, R.3
  • 27
    • 0000023445 scopus 로고
    • Pattern and process in vertebrate phylogeny revealed by coevolution of molecules and phylogenies
    • Patterson C, editor Cambridge (United Kingdom Cambridge University Press
    • Goodman M, Miyamoto M, Czelusniak J. 1987. Pattern and process in vertebrate phylogeny revealed by coevolution of molecules and phylogenies. In: Patterson C, editor. Molecules and morphology in evolution: conflict or compromise? Cambridge (United Kingdom): Cambridge University Press. p. 140-176.
    • (1987) Molecules and Morphology in Evolution: Conflict or Compromise? , pp. 140-176
    • Goodman, M.1    Miyamoto, M.2    Czelusniak, J.3
  • 28
    • 0002038910 scopus 로고    scopus 로고
    • Organization, evolution, and regulation of the globin genes
    • Steinberg MH, Forget BG, Higgs DR, Nagel RL, editors Cambridge (United Kingdom Cambridge University Press
    • Hardison RC. 2001. Organization, evolution, and regulation of the globin genes. In: Steinberg MH, Forget BG, Higgs DR, Nagel RL, editors. Disorders of hemoglobin: genetics, pathophysiology, and clinical management. Cambridge (United Kingdom): Cambridge University Press. p. 95-115.
    • (2001) Disorders of Hemoglobin: Genetics, Pathophysiology, and Clinical Management , pp. 95-115
    • Hardison, R.C.1
  • 29
    • 65349101312 scopus 로고    scopus 로고
    • Globin genes on the move
    • Hardison RC. 2008. Globin genes on the move. J Biol. 7:35.
    • (2008) J Biol , vol.7 , pp. 35
    • Hardison, R.C.1
  • 30
    • 34548390127 scopus 로고    scopus 로고
    • Evolution of trace amine associated receptor (TAAR) gene family in vertebrates: Lineage-specific expansions and degradations of a second class of vertebrate chemosensory receptors expressed in the olfactory epithelium
    • Hashiguchi Y, Nishida M. 2007. Evolution of trace amine associated receptor (TAAR) gene family in vertebrates: lineage-specific expansions and degradations of a second class of vertebrate chemosensory receptors expressed in the olfactory epithelium. Mol Biol Evol. 24: 2099-2107.
    • (2007) Mol Biol Evol , vol.24 , pp. 2099-2107
    • Hashiguchi, Y.1    Nishida, M.2
  • 31
    • 0018570714 scopus 로고
    • Analysis of Xenopus laevis globins during development and erythroid cell maturation and the construction of recombinant plasmids containing sequences derived from adult globin mRNA
    • Hentschel CC, Kay RM, Williams JG. 1979. Analysis of Xenopus laevis globins during development and erythroid cell maturation and the construction of recombinant plasmids containing sequences derived from adult globin mRNA. Dev Biol. 72:350-363.
    • (1979) Dev Biol , vol.72 , pp. 350-363
    • Hentschel, C.C.1    Kay, R.M.2    Williams, J.G.3
  • 32
    • 4143134848 scopus 로고    scopus 로고
    • Phylogenetic timing of the fish-specific genome duplication correlates with the diversification of teleost fish
    • Hoegg S, Brinkman H, Taylor JS, Meyer A. 2004. Phylogenetic timing of the fish-specific genome duplication correlates with the diversification of teleost fish. J Mol Evol. 5:190-203.
    • (2004) J Mol Evol , vol.5 , pp. 190-203
    • Hoegg, S.1    Brinkman, H.2    Taylor, J.S.3    Meyer, A.4
  • 33
    • 22144452139 scopus 로고    scopus 로고
    • Hox clusters as models for vertebrate genome evolution
    • Hoegg S, Meyer A. 2005. Hox clusters as models for vertebrate genome evolution. Trends Genet. 21:421-424.
    • (2005) Trends Genet , vol.21 , pp. 421-424
    • Hoegg, S.1    Meyer, A.2
  • 34
    • 34548732734 scopus 로고    scopus 로고
    • Phylogenomic analyses of KCNA clusters in vertebrates: Why do some clusters stay intact?
    • Hoegg S, Meyer A. 2007. Phylogenomic analyses of KCNA clusters in vertebrates: why do some clusters stay intact? BMC Evol Biol. 7:139.
    • (2007) BMC Evol Biol , vol.7 , pp. 139
    • Hoegg, S.1    Meyer, A.2
  • 36
    • 39749109407 scopus 로고    scopus 로고
    • Rapid rates of lineage-specific gene duplication and deletion in the a-globin gene family
    • Hoffmann FG, Opazo JC, Storz JF. 2008a. Rapid rates of lineage-specific gene duplication and deletion in the a-globin gene family. Mol Biol Evol. 25:591-602.
    • (2008) Mol Biol Evol , vol.25 , pp. 591-602
    • Hoffmann, F.G.1    Opazo, J.C.2    Storz, J.F.3
  • 37
    • 56449106384 scopus 로고    scopus 로고
    • New genes originated via multiple recombinational pathways in the b-globin gene family of rodents
    • Hoffmann FG, Opazo JC, Storz JF. 2008b. New genes originated via multiple recombinational pathways in the b-globin gene family of rodents. Mol Biol Evol. 25:2589-2600.
    • (2008) Mol Biol Evol , vol.25 , pp. 2589-2600
    • Hoffmann, F.G.1    Opazo, J.C.2    Storz, J.F.3
  • 38
    • 77956272960 scopus 로고    scopus 로고
    • Gene cooption and convergent evolution of oxygen transport hemoglobins in jawed and jawless vertebrates
    • Hoffmann FG, Opazo JC, Storz JF. 2010. Gene cooption and convergent evolution of oxygen transport hemoglobins in jawed and jawless vertebrates. Proc Natl Acad Sci USA. 107:14274-14279.
    • (2010) Proc Natl Acad Sci USA , vol.107 , pp. 14274-14279
    • Hoffmann, F.G.1    Opazo, J.C.2    Storz, J.F.3
  • 39
    • 84856397079 scopus 로고    scopus 로고
    • Differential loss and retention of myoglobin, cytoglobin, and globin-E during the radiation of vertebrates
    • Hoffmann FG, Opazo JC, Storz JF. 2011. Differential loss and retention of myoglobin, cytoglobin, and globin-E during the radiation of vertebrates. Genome Biol Evol. 3:588-600.
    • (2011) Genome Biol Evol , vol.3 , pp. 588-600
    • Hoffmann, F.G.1    Opazo, J.C.2    Storz, J.F.3
  • 40
    • 84861376715 scopus 로고    scopus 로고
    • Whole-genome duplications spurred the functional diversification of the globin gene superfamily in vertebrates
    • Hoffmann FG, Opazo JC, Storz JF. 2012. Whole-genome duplications spurred the functional diversification of the globin gene superfamily in vertebrates. Mol Biol Evol. 29:303-312.
    • (2012) Mol Biol Evol , vol.29 , pp. 303-312
    • Hoffmann, F.G.1    Opazo, J.C.2    Storz, J.F.3
  • 41
    • 77951546469 scopus 로고    scopus 로고
    • Lineage-specific patterns of functional diversification in the a-and b-globin gene families of tetrapod vertebrates
    • Hoffmann FG, Storz JF, Gorr TA, Opazo JC. 2010. Lineage-specific patterns of functional diversification in the a-and b-globin gene families of tetrapod vertebrates. Mol Biol Evol. 27:1126-1138.
    • (2010) Mol Biol Evol , vol.27 , pp. 1126-1138
    • Hoffmann, F.G.1    Storz, J.F.2    Gorr, T.A.3    Opazo, J.C.4
  • 43
    • 84857613938 scopus 로고    scopus 로고
    • Androglobin: A chimeric globin in metazoans that is preferentially expressed in mammalian testes
    • 11 co-authors
    • Hoogewijs D, Ebner B, Germani F, et al. (11 co-authors). 2012. Androglobin: a chimeric globin in metazoans that is preferentially expressed in mammalian testes. Mol Biol Evol. 29:1105-1114.
    • (2012) Mol Biol Evol , vol.29 , pp. 1105-1114
    • Hoogewijs, D.1    Ebner, B.2    Germani, F.3
  • 44
    • 0020680868 scopus 로고
    • The Xenopus laevis globin gene family: Chromosomal arrangement and gene structure
    • Hosbach HA, Wyler T, Weber R. 1983. The Xenopus laevis globin gene family: chromosomal arrangement and gene structure. Cell 32: 45-53.
    • (1983) Cell , vol.32 , pp. 45-53
    • Hosbach, H.A.1    Wyler, T.2    Weber, R.3
  • 45
    • 0345629344 scopus 로고    scopus 로고
    • Vertebrate hemoglobins
    • Bethesda (MD American Physiological Society
    • Ingermann RI. 1997. Vertebrate hemoglobins. In: Handbook of physiology. Bethesda (MD): American Physiological Society. p. 357-408.
    • (1997) Handbook of Physiology , pp. 357-408
    • Ingermann, R.I.1
  • 46
    • 7244259101 scopus 로고    scopus 로고
    • Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype
    • 61 co-authors
    • Jaillon O, Aury J, Brunet F, et al. (61 co-authors). 2004. Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype. Nature 431:946-957.
    • (2004) Nature , vol.431 , pp. 946-957
    • Jaillon, O.1    Aury, J.2    Brunet, F.3
  • 47
    • 0018973068 scopus 로고
    • Linkage of adult alpha-and beta-globin genes in X. laevis and gene duplication by tetraploidization
    • Jeffreys AJ, Wilson V, Wood D, Simons JP, Kay RM, Williams JG. 1980. Linkage of adult alpha-and beta-globin genes in X. laevis and gene duplication by tetraploidization. Cell 21:555-564.
    • (1980) Cell , vol.21 , pp. 555-564
    • Jeffreys, A.J.1    Wilson, V.2    Wood, D.3    Simons, J.P.4    Kay, R.M.5    Williams, J.G.6
  • 48
    • 77956747884 scopus 로고    scopus 로고
    • Hemoglobin structure and function
    • Perry SF, Tufts BL, editors San Diego (CA Academic Press
    • Jensen FB, Fago A, Weber RE. 1998. Hemoglobin structure and function. In: Perry SF, Tufts BL, editors. Fish physiology, Vol. 17: Fish respiration. San Diego (CA): Academic Press. p. 1-40.
    • (1998) Fish Physiology : Fish Respiration , vol.17 , pp. 1-40
    • Jensen, F.B.1    Fago, A.2    Weber, R.E.3
  • 49
    • 13444259388 scopus 로고    scopus 로고
    • Treefinder: A powerful graphical analysis environment for molecular phylogenetics
    • Jobb G, von Haeseler A, Strimmer K. 2004. Treefinder: a powerful graphical analysis environment for molecular phylogenetics. BMC Evol Biol. 4:18.
    • (2004) BMC Evol Biol , vol.4 , pp. 18
    • Jobb, G.1    Von Haeseler, A.2    Strimmer, K.3
  • 50
    • 34249994907 scopus 로고    scopus 로고
    • The medaka draft genome and insights into vertebrate genome evolution
    • 37 co-authors
    • Kasahara M, Naruse K, Sasaki S, et al. (37 co-authors). 2007. The medaka draft genome and insights into vertebrate genome evolution. Nature 447:714-719.
    • (2007) Nature , vol.447 , pp. 714-719
    • Kasahara, M.1    Naruse, K.2    Sasaki, S.3
  • 51
    • 68049142320 scopus 로고    scopus 로고
    • Multiple alignment of DNA sequences with MAFFT
    • Katoh K, Asimenos G, Toh H. 2009. Multiple alignment of DNA sequences with MAFFT. Methods Mol Biol. 537:39-64.
    • (2009) Methods Mol Biol , vol.537 , pp. 39-64
    • Katoh, K.1    Asimenos, G.2    Toh, H.3
  • 52
    • 0019332690 scopus 로고
    • Molecular cloning of cDNA sequences coding for the major alpha-and betaglobin polypeptides of adult Xenopus laevis
    • Kay RM, Harris R, Patient RK, Williams JG. 1980. Molecular cloning of cDNA sequences coding for the major alpha-and betaglobin polypeptides of adult Xenopus laevis. Nucleic Acids Res. 8: 2691-2707.
    • (1980) Nucleic Acids Res , vol.8 , pp. 2691-2707
    • Kay, R.M.1    Harris, R.2    Patient, R.K.3    Williams, J.G.4
  • 53
    • 31144442881 scopus 로고    scopus 로고
    • Automatic assessment of alignment quality
    • Lassmann T, Sonnhammer ELL. 2005. Automatic assessment of alignment quality. Nucleic Acids Res. 33:7120-7128.
    • (2005) Nucleic Acids Res , vol.33 , pp. 7120-7128
    • Lassmann, T.1    Sonnhammer, E.L.L.2
  • 54
    • 33747818327 scopus 로고    scopus 로고
    • Kalign, Kalignvu and Mumsa: Web servers for multiple sequence alignment
    • Lassmann T, Sonnhammer ELL. 2006. Kalign, Kalignvu and Mumsa: web servers for multiple sequence alignment. Nucleic Acids Res. 34: W596-W599.
    • (2006) Nucleic Acids Res , vol.34
    • Lassmann, T.1    Sonnhammer, E.L.L.2
  • 55
    • 77951572257 scopus 로고    scopus 로고
    • Salmo salar and Esox lucius full-length cDNA sequences reveal changes in evolutionary pressures on a post-tetraploidization genome
    • 12 co-authors
    • Leong JS, Jantzen SG, von Schalburg KR, et al. (12 co-authors). 2010. Salmo salar and Esox lucius full-length cDNA sequences reveal changes in evolutionary pressures on a post-tetraploidization genome. BMC Genomics. 11:279.
    • (2010) BMC Genomics , vol.11 , pp. 279
    • Leong, J.S.1    Jantzen, S.G.2    Von Schalburg, K.R.3
  • 56
    • 0035884370 scopus 로고    scopus 로고
    • Duplicate mitf genes in zebrafish: Complementary expression and conservation ofmelanogenic potential
    • Lister JA, Close J, Raible DW. 2001. Duplicate mitf genes in zebrafish: complementary expression and conservation ofmelanogenic potential. Dev Biol. 237:333-344.
    • (2001) Dev Biol , vol.237 , pp. 333-344
    • Lister, J.A.1    Close, J.2    Raible, D.W.3
  • 57
    • 36749019041 scopus 로고    scopus 로고
    • Organization of the hb1 genes of the antarctic skate Bathyraja eatonii: New insights into the evolution of globin genes
    • Marino K, Boschetto L, de Pascale D, Cocca E. 2007. Organization of the hb1 genes of the antarctic skate Bathyraja eatonii: new insights into the evolution of globin genes. Gene 406:199-208.
    • (2007) Gene , vol.406 , pp. 199-208
    • Marino, K.1    Boschetto, L.2    De Pascale, D.3    Cocca, E.4
  • 58
    • 0032744810 scopus 로고    scopus 로고
    • Characterization and expression of embryonic globin in the rainbow trout, Oncorhynchus mykiss: Intra-embryonic initiation of erythropoiesis
    • Maruyama K, Yasumasu S, Iuchi I. 1999. Characterization and expression of embryonic globin in the rainbow trout, Oncorhynchus mykiss: intra-embryonic initiation of erythropoiesis. Dev Growth Differ. 41: 589-599.
    • (1999) Dev Growth Differ , vol.41 , pp. 589-599
    • Maruyama, K.1    Yasumasu, S.2    Iuchi, I.3
  • 59
    • 2942522515 scopus 로고    scopus 로고
    • Evolution of globin genes of the medaka Oryzias latipes (Euteleostei; Beloniformes; Oryziinae
    • Maruyama K, Yasumasu S, Iuchi I. 2004. Evolution of globin genes of the medaka Oryzias latipes (Euteleostei; Beloniformes; Oryziinae). Mech Dev. 121:753-769.
    • (2004) Mech Dev , vol.121 , pp. 753-769
    • Maruyama, K.1    Yasumasu, S.2    Iuchi, I.3
  • 60
    • 2942550796 scopus 로고    scopus 로고
    • Genomic organization and developmental expression of globin genes in the teleost Oryzias latipes
    • Maruyama K, Yasumasu S, Naruse K, Mitani H, Shima A, Iuchi I. 2004. Genomic organization and developmental expression of globin genes in the teleost Oryzias latipes. Gene 335:89-100.
    • (2004) Gene , vol.335 , pp. 89-100
    • Maruyama, K.1    Yasumasu, S.2    Naruse, K.3    Mitani, H.4    Shima, A.5    Iuchi, I.6
  • 62
    • 0032518271 scopus 로고    scopus 로고
    • Hox gene variation and evolution
    • Meyer A. 1998. Hox gene variation and evolution. Nature 391:225, 227-228.
    • (1998) Nature , vol.391 , Issue.225 , pp. 227-228
    • Meyer, A.1
  • 63
    • 0033602459 scopus 로고    scopus 로고
    • Vertebrate genomics: More fishy tales about Hox genes
    • Meyer A, Málaga-Trillo E. 1999. Vertebrate genomics: more fishy tales about Hox genes. Curr Biol. 9:R210-R213.
    • (1999) Curr Biol , vol.9
    • Meyer, A.1    Málaga-Trillo, E.2
  • 64
    • 0032733930 scopus 로고    scopus 로고
    • Gene and genome duplications in vertebrates: The one-to-four (-to-eight in fish) rule and the evolution of novel gene functions
    • Meyer A, Schartl M. 1999. Gene and genome duplications in vertebrates: the one-to-four (-to-eight in fish) rule and the evolution of novel gene functions. Curr Opin Cell Biol. 11:699-704.
    • (1999) Curr Opin Cell Biol , vol.11 , pp. 699-704
    • Meyer, A.1    Schartl, M.2
  • 65
    • 26244444380 scopus 로고    scopus 로고
    • From 2R to 3R: Evidence for a fish-specific genome duplication (FSGD
    • Meyer A, Van de Peer Y. 2005. From 2R to 3R: evidence for a fish-specific genome duplication (FSGD). Bioessays 27:937-945.
    • (2005) Bioessays , vol.27 , pp. 937-945
    • Meyer, A.1    Van De Peer, Y.2
  • 66
    • 0030828814 scopus 로고    scopus 로고
    • Head-to-head linkage of carp a-and b-globin genes
    • Miyata M, Aoki T. 1997. Head-to-head linkage of carp a-and b-globin genes. Biochim Biophys Acta. 1354:127-133.
    • (1997) Biochim Biophys Acta , vol.1354 , pp. 127-133
    • Miyata, M.1    Aoki, T.2
  • 67
    • 33745906973 scopus 로고    scopus 로고
    • Breakup of a homeobox cluster after genome duplication in teleosts
    • Mulley JF, Chiu CH, Holland PW. 2006. Breakup of a homeobox cluster after genome duplication in teleosts. Proc Natl Acad Sci USA. 103: 10369-10372.
    • (2006) Proc Natl Acad Sci USA , vol.103 , pp. 10369-10372
    • Mulley, J.F.1    Chiu, C.H.2    Holland, P.W.3
  • 68
    • 77951972053 scopus 로고    scopus 로고
    • Genomicus: A database and a browser to study gene synteny in modern and ancestral genomes
    • Muffato M, Louis A, Poisnel C, Crollius HR. 2010. Genomicus: a database and a browser to study gene synteny in modern and ancestral genomes. Bioinformatics 26:1119-1121.
    • (2010) Bioinformatics , vol.26 , pp. 1119-1121
    • Muffato, M.1    Louis, A.2    Poisnel, C.3    Crollius, H.R.4
  • 69
    • 0017888225 scopus 로고
    • The hemoglobin of the common sting-ray, Dasyatis sabina: Structural and functional properties
    • Mumm DP, Atha DH, Riggs A. 1978. The hemoglobin of the common sting-ray, Dasyatis sabina: structural and functional properties. Comp Biochem Physiol B. 60:189-193.
    • (1978) Comp Biochem Physiol B , vol.60 , pp. 189-193
    • Mumm, D.P.1    Atha, D.H.2    Riggs, A.3
  • 70
    • 34548420992 scopus 로고    scopus 로고
    • Reconstruction of the vertebrate ancestral genome reveals dynamic genome reorganization in early vertebrates
    • Nakatani Y, Takeda H, Kohara Y, Morishita S. 2007. Reconstruction of the vertebrate ancestral genome reveals dynamic genome reorganization in early vertebrates. Genome Res. 17:1254-1265.
    • (2007) Genome Res , vol.17 , pp. 1254-1265
    • Nakatani, Y.1    Takeda, H.2    Kohara, Y.3    Morishita, S.4
  • 72
    • 40349116061 scopus 로고    scopus 로고
    • Genomic evidence for independent origins of b-like globin genes in monotremes and therian mammals
    • Opazo JC, Hoffmann FG, Storz JF. 2008a. Genomic evidence for independent origins of b-like globin genes in monotremes and therian mammals. Proc Natl Acad Sci USA. 105:1590-1595.
    • (2008) Proc Natl Acad Sci USA , vol.105 , pp. 1590-1595
    • Opazo, J.C.1    Hoffmann, F.G.2    Storz, J.F.3
  • 73
    • 51349166309 scopus 로고    scopus 로고
    • Differential loss of embryonic globin genes during the radiation of placental mammals
    • Opazo JC, Hoffmann FG, Storz JF. 2008b. Differential loss of embryonic globin genes during the radiation of placental mammals. Proc Natl Acad Sci USA. 105:12950-12955.
    • (2008) Proc Natl Acad Sci USA , vol.105 , pp. 12950-12955
    • Opazo, J.C.1    Hoffmann, F.G.2    Storz, J.F.3
  • 74
    • 67649308436 scopus 로고    scopus 로고
    • Origin and ascendancy of a chimeric fusion gene: The b/d-globin gene of paenungulate mammals
    • Opazo JC, Sloan AM, Campbell KL, Storz JF. 2009. Origin and ascendancy of a chimeric fusion gene: the b/d-globin gene of paenungulate mammals. Mol Biol Evol. 26:1469-1478.
    • (2009) Mol Biol Evol , vol.26 , pp. 1469-1478
    • Opazo, J.C.1    Sloan, A.M.2    Campbell, K.L.3    Storz, J.F.4
  • 76
    • 78651478858 scopus 로고    scopus 로고
    • Globin gene structure in a reptile supports the transpositional model for amniote a-and b-globin gene evolution
    • Patel VS, Ezaz T, Deakin JE,MarshallGraves JA. 2010. Globin gene structure in a reptile supports the transpositional model for amniote a-and b-globin gene evolution. Chromosome Res. 18:897-907.
    • (2010) Chromosome Res , vol.18 , pp. 897-907
    • Patel, V.S.1    Ezaz, T.2    Deakin, J.E.3    Marshallgraves, J.A.4
  • 81
    • 0041386108 scopus 로고    scopus 로고
    • Mrbayes 3: Bayesian phylogenetic inference under mixed models
    • Ronquist F, Huelsenbeck JP. 2003. Mrbayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19:1572-1574.
    • (2003) Bioinformatics , vol.19 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 82
    • 73349088137 scopus 로고    scopus 로고
    • Evolution of duplicated b-globin genes and the structural basis of hemoglobin isoform differentiation in Mus
    • Runck AM, Moriyama H, Storz JF. 2009. Evolution of duplicated b-globin genes and the structural basis of hemoglobin isoform differentiation in Mus. Mol Biol Evol. 26:2521-2532.
    • (2009) Mol Biol Evol , vol.26 , pp. 2521-2532
    • Runck, A.M.1    Moriyama, H.2    Storz, J.F.3
  • 84
    • 67649807765 scopus 로고    scopus 로고
    • Temporal pattern of loss/persistence of duplicate genes involved in signal transduction andmetabolic pathways after teleost-specific genome duplication
    • Sato Y, Hashiguchi Y, Nishida M. 2009a. Temporal pattern of loss/persistence of duplicate genes involved in signal transduction andmetabolic pathways after teleost-specific genome duplication. BMC Evol Biol. 9:127.
    • (2009) BMC Evol Biol , vol.9 , pp. 127
    • Sato, Y.1    Hashiguchi, Y.2    Nishida, M.3
  • 85
    • 62649155906 scopus 로고    scopus 로고
    • Evolution of multiple phosphodiesterase isoforms in stickleback involved in cAMP signal transduction pathway
    • Sato Y, Hashiguchi Y, Nishida M. 2009b. Evolution of multiple phosphodiesterase isoforms in stickleback involved in cAMP signal transduction pathway. BMC Syst Biol. 3:23.
    • (2009) BMC Syst Biol , vol.3 , pp. 23
    • Sato, Y.1    Hashiguchi, Y.2    Nishida, M.3
  • 86
    • 38049150292 scopus 로고    scopus 로고
    • Post-duplication charge evolution of phosphoglucose isomerases in teleost fishes throughweak selection onmany amino acid sites
    • Sato Y, Nishida M. 2007. Post-duplication charge evolution of phosphoglucose isomerases in teleost fishes throughweak selection onmany amino acid sites. BMC Evol Biol. 7:204.
    • (2007) BMC Evol Biol , vol.7 , pp. 204
    • Sato, Y.1    Nishida, M.2
  • 87
    • 77951766330 scopus 로고    scopus 로고
    • Teleost fish with specific genome duplication as unique models of vertebrate evolution
    • Sato Y, Nishida M. 2010. Teleost fish with specific genome duplication as unique models of vertebrate evolution. Environ Biol Fish. 88:169-188.
    • (2010) Environ Biol Fish , vol.88 , pp. 169-188
    • Sato, Y.1    Nishida, M.2
  • 91
    • 35248812530 scopus 로고    scopus 로고
    • Comparative genomics of ParaHox clusters of teleost fishes: Gene cluster breakup and the retention of gene sets following whole genome duplications
    • Siegel N, Hoegg S, Salzburger W, Braasch I, Meyer A. 2007. Comparative genomics of ParaHox clusters of teleost fishes: gene cluster breakup and the retention of gene sets following whole genome duplications. BMC Genomics. 8:312.
    • (2007) BMC Genomics , vol.8 , pp. 312
    • Siegel, N.1    Hoegg, S.2    Salzburger, W.3    Braasch, I.4    Meyer, A.5
  • 92
    • 79958043184 scopus 로고    scopus 로고
    • Phylogenetic diversification of the globin gene superfamily in chordates
    • Storz J F, Opazo JC, Hoffmann FG. 2011. Phylogenetic diversification of the globin gene superfamily in chordates. IUBMB Life 63:313-322.
    • (2011) IUBMB Life , vol.63 , pp. 313-322
    • Storz, J.F.1    Opazo, J.C.2    Hoffmann, F.G.3
  • 93
    • 84873096226 scopus 로고    scopus 로고
    • Gene duplication, genome duplication, and the functional diversification of vertebrate globins
    • Forthcoming
    • Storz J F, Opazo JC, Hoffmann FG. Forthcoming 2012. Gene duplication, genome duplication, and the functional diversification of vertebrate globins. Mol Phyl Evol. http://dx.doi.org/10.1016/j.ympev.2012.07. 013.
    • (2012) Mol Phyl Evol
    • Storz, J.F.1    Opazo, J.C.2    Hoffmann, F.G.3
  • 94
    • 0037351989 scopus 로고    scopus 로고
    • Genome duplication, a trait shared by 22,000 species of ray-finned fish
    • Taylor JS, Braasch I, Frickey T, Meyer A, Van de Peer Y. 2003. Genome duplication, a trait shared by 22,000 species of ray-finned fish. Genome Res. 13:382-390.
    • (2003) Genome Res , vol.13 , pp. 382-390
    • Taylor, J.S.1    Braasch, I.2    Frickey, T.3    Meyer, A.4    Van De Peer, Y.5
  • 95
  • 97
    • 70349325524 scopus 로고    scopus 로고
    • The evolutionary significance of ancient genome duplications
    • Van de Peer Y, Maere S, Meyer A. 2009. The evolutionary significance of ancient genome duplications. Nat Rev Genet. 10:725-732.
    • (2009) Nat Rev Genet , vol.10 , pp. 725-732
    • Van De Peer, Y.1    Maere, S.2    Meyer, A.3
  • 99
    • 59949096873 scopus 로고    scopus 로고
    • Ensemblcompara genetrees: Complete, duplication-aware phylogenetic trees in vertebrates
    • Vilella AJ, Severin J, Ureta-Vidal A, Heng L, Durbin R, Birney E. 2009. Ensemblcompara genetrees: complete, duplication-aware phylogenetic trees in vertebrates. Genome Res. 19:327-335.
    • (2009) Genome Res , vol.19 , pp. 327-335
    • Vilella, A.J.1    Severin, J.2    Ureta-Vidal, A.3    Heng, L.4    Durbin, R.5    Birney, E.6
  • 100
    • 0034786419 scopus 로고    scopus 로고
    • Origin and evolution of the neural crest: A hypothetical reconstruction of its evolutionary history
    • Wada H. 2001. Origin and evolution of the neural crest: a hypothetical reconstruction of its evolutionary history. Dev Growth Differ. 43: 509-520.
    • (2001) Dev Growth Differ , vol.43 , pp. 509-520
    • Wada, H.1
  • 101
    • 33646918601 scopus 로고    scopus 로고
    • Genome duplications of early vertebrates as a possible chronicle of the evolutionary history of the neural crest
    • Wada H, Makabe K. 2006. Genome duplications of early vertebrates as a possible chronicle of the evolutionary history of the neural crest. Int J Biol Sci. 2:133-141.
    • (2006) Int J Biol Sci , vol.2 , pp. 133-141
    • Wada, H.1    Makabe, K.2
  • 102
    • 0002884437 scopus 로고
    • Functional significance and structural basis of multiple hemoglobins with special reference to ectothermic vertebrates.
    • Truchot JP, Lahlou B, editors Basel (Switzerland): Karger
    • Weber RE. 1990. Functional significance and structural basis of multiple hemoglobins with special reference to ectothermic vertebrates. In: Truchot JP, Lahlou B, editors. Animal nutrition and transport processes. 2. Transport, respiration and excretion: comparative and environmental aspects. Basel (Switzerland): Karger. p. 58-75.
    • (1990) Animal Nutrition and Transport Processes. Transport, Respiration and Excretion: Comparative and Environmental Aspects , vol.2 , pp. 58-75
    • Weber, R.E.1
  • 105
    • 0023866302 scopus 로고
    • Functional adaptations in hemoglobins from ectothermic vertebrates
    • Weber RE, Jensen FB. 1988. Functional adaptations in hemoglobins from ectothermic vertebrates. Ann Rev Physiol. 50:161-179.
    • (1988) Ann Rev Physiol , vol.50 , pp. 161-179
    • Weber, R.E.1    Jensen, F.B.2
  • 106
    • 0020724984 scopus 로고
    • Allosteric interactions governing oxygen equilibria in the haemoglobin system of the spiny dogfish. Squalus acanthias
    • Weber RE, Wells RMG, Rossetti JE. 1983. Allosteric interactions governing oxygen equilibria in the haemoglobin system of the spiny dogfish. Squalus acanthias. J Exp Biol. 103:109-120.
    • (1983) J Exp Biol , vol.103 , pp. 109-120
    • Weber, R.E.1    Rmg, W.2    Rossetti, J.E.3
  • 107
    • 84998950149 scopus 로고    scopus 로고
    • Blood-gas transport and hemoglobin function: Adaptations for functional and environmental hypoxia
    • Richards JG, Farrell AP, Brauner CJ, editors New York Elsevier
    • Wells RMG. 2009. Blood-gas transport and hemoglobin function: adaptations for functional and environmental hypoxia. In: Richards JG, Farrell AP, Brauner CJ, editors. Fish physiology, Vol. 27. New York: Elsevier. p. 255-299.
    • (2009) Fish Physiology , vol.27 , pp. 255-299
    • Wells, R.M.G.1
  • 108
    • 77957986214 scopus 로고    scopus 로고
    • Genomic organization and gene expression of the multiple globins in atlantic cod: Conservation of globin-flanking genes in chordates infers the origin of the vertebrate globin clusters
    • Wetten OF, Nederbragt AJ, Wilson RC, Jakobsen KS, Edvardsen RB, Andersen O. 2010. Genomic organization and gene expression of the multiple globins in atlantic cod: conservation of globin-flanking genes in chordates infers the origin of the vertebrate globin clusters. BMC Evol Biol. 10:315.
    • (2010) BMC Evol Biol , vol.10 , pp. 315
    • Wetten, O.F.1    Nederbragt, A.J.2    Wilson, R.C.3    Jakobsen, K.S.4    Edvardsen, R.B.5    ø, A.6
  • 109
    • 34247120219 scopus 로고    scopus 로고
    • Sequencing and comparative analysis of fugu protocadherin clusters reveal diversity of protocadherin genes among teleosts
    • Yu WP, Yew K, Rajasegaran V, Venkatesh B. 2007. Sequencing and comparative analysis of fugu protocadherin clusters reveal diversity of protocadherin genes among teleosts. BMC Evol Biol. 7:49.
    • (2007) BMC Evol Biol , vol.7 , pp. 49
    • Yu, W.P.1    Yew, K.2    Rajasegaran, V.3    Venkatesh, B.4
  • 110
    • 53449101955 scopus 로고    scopus 로고
    • Genome duplication and the origin of the vertebrate skeleton
    • Zhang G, Cohn MJ. 2008. Genome duplication and the origin of the vertebrate skeleton. Curr Opin Genet Dev. 18:387-393.
    • (2008) Curr Opin Genet Dev , vol.18 , pp. 387-393
    • Zhang, G.1    Cohn, M.J.2


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