메뉴 건너뛰기




Volumn 29, Issue 1, 2012, Pages 303-312

Whole-genome duplications spurred the functional diversification of the globin gene superfamily in vertebrates

Author keywords

Cytoglobin; Genome duplication; Globin gene family; Hemoglobin; Myoglobin

Indexed keywords

ALPHA GLOBIN; CYTOGLOBIN; GLOBIN; HEMOGLOBIN; MYOGLOBIN;

EID: 84861376715     PISSN: 07374038     EISSN: 15371719     Source Type: Journal    
DOI: 10.1093/molbev/msr207     Document Type: Article
Times cited : (87)

References (63)
  • 4
    • 79960662890 scopus 로고    scopus 로고
    • Oxygen supply from the bird's eye perspective: Globin E is a respiratory protein in the chicken retina
    • Blank M, Kiger L, Thielebein A, Gerlach F, Hankeln T, Marden MC, Burmester T. 2011. Oxygen supply from the bird's eye perspective: Globin E is a respiratory protein in the chicken retina. J Biol Chem. 286:26507-26515.
    • (2011) J Biol Chem. , vol.286 , pp. 26507-26515
    • Blank, M.1    Kiger, L.2    Thielebein, A.3    Gerlach, F.4    Hankeln, T.5    Marden, M.C.6    Burmester, T.7
  • 5
    • 77951764763 scopus 로고    scopus 로고
    • Pigmentation pathway evolution after whole-genome duplication in fish
    • Braasch I, Brunet F, Volff J, Schartl M. 2009. Pigmentation pathway evolution after whole-genome duplication in fish. Genome Biol Evol. 1:479-493.
    • (2009) Genome Biol Evol. , vol.1 , pp. 479-493
    • Braasch, I.1    Brunet, F.2    Volff, J.3    Schartl, M.4
  • 6
    • 33646885704 scopus 로고    scopus 로고
    • Asymmetric evolution in two fish-specifically duplicated receptor tyrosine kinase paralogons involved in teleost coloration
    • DOI 10.1093/molbev/msk003
    • Braasch I, Salzburger W, Meyer A. 2006. Asymmetric evolution in two fish-specifically duplicated receptor tyrosine kinase paralogons involved in teleost coloration. Mol Biol Evol. 23:1192-1202. (Pubitemid 43781594)
    • (2006) Molecular Biology and Evolution , vol.23 , Issue.6 , pp. 1192-1202
    • Braasch, I.1    Salzburger, W.2    Meyer, A.3
  • 7
    • 34250182014 scopus 로고    scopus 로고
    • Evolution of pigment synthesis pathways by gene and genome duplication in fish
    • Braasch I, Schartl M, Volff J. 2007. Evolution of pigment synthesis pathways by gene and genome duplication in fish. BMC Evol Biol. 7:74.
    • (2007) BMC Evol Biol. , vol.7 , pp. 74
    • Braasch, I.1    Schartl, M.2    Volff, J.3
  • 8
    • 62349112527 scopus 로고    scopus 로고
    • The endothelin system: Evolution of vertebrate-specific ligand-receptor interactions by three rounds of genome duplication
    • Braasch I, Volff J, Schartl M. 2009. The endothelin system: Evolution of vertebrate-specific ligand-receptor interactions by three rounds of genome duplication. Mol Biol Evol. 26:783-799.
    • (2009) Mol Biol Evol. , vol.26 , pp. 783-799
    • Braasch, I.1    Volff, J.2    Schartl, M.3
  • 9
    • 0036219963 scopus 로고    scopus 로고
    • Cytoglobin: A novel globin type ubiquitously expressed in vertebrate tissues
    • Burmester T, Ebner B, Weich B, Hankeln T. 2002. Cytoglobin: A novel globin type ubiquitously expressed in vertebrate tissues. Mol Biol Evol. 19:416-421. (Pubitemid 34289416)
    • (2002) Molecular Biology and Evolution , vol.19 , Issue.4 , pp. 416-421
    • Burmester, T.1    Ebner, B.2    Weich, B.3    Hankeln, T.4
  • 12
    • 26444603772 scopus 로고    scopus 로고
    • Two rounds of whole genome duplication in the ancestral vertebrate
    • Dehal P, Boore JL. 2005. Two rounds of whole genome duplication in the ancestral vertebrate. PLoS Biol. 3:e314.
    • (2005) PLoS Biol. , vol.3
    • Dehal, P.1    Boore, J.L.2
  • 13
    • 33644536713 scopus 로고    scopus 로고
    • Tunicates and not cephalochordates are the closest living relatives of vertebrates
    • DOI 10.1038/nature04336, PII N04336
    • Delsuc F, Brinkmann H, Chourrout D, Philippe H. 2006. Tunicates and not cephalochordates are the closest living relatives of vertebrates. Nature 439:965-968. (Pubitemid 43292413)
    • (2006) Nature , vol.439 , Issue.7079 , pp. 965-968
    • Delsuc, F.1    Brinkmann, H.2    Chourrout, D.3    Philippe, H.4
  • 15
    • 0042335879 scopus 로고    scopus 로고
    • Globin genes are present in Ciona intestinalis
    • DOI 10.1093/molbev/msg164
    • Ebner B, Burmester T, Hankeln T. 2003. Globin genes are present in Ciona intestinalis. Mol Biol Evol. 20:1521-1525. (Pubitemid 37082587)
    • (2003) Molecular Biology and Evolution , vol.20 , Issue.9 , pp. 1521-1525
    • Ebner, B.1    Burmester, T.2    Hankeln, T.3
  • 17
    • 17144420129 scopus 로고    scopus 로고
    • Functional properties of neuroglobin and cytoglobin. Insights into the ancestral physiological roles of globins
    • DOI 10.1080/15216540500037299
    • Fago A, Hundahl C, Malte H, Weber RE. 2004. Functional properties of neuroglobin and cytoglobin. Insights into the ancestral physiological roles of globins. IUBMB Life. 56: 689-696. (Pubitemid 40515814)
    • (2004) IUBMB Life , vol.56 , Issue.11-12 , pp. 689-696
    • Fago, A.1    Hundahl, C.2    Malte, H.3    Weber, R.E.4
  • 18
    • 32944462917 scopus 로고    scopus 로고
    • The amphibian globin gene repertoire as revealed by the Xenopus genome
    • DOI 10.1159/000089884
    • Fuchs C, Burmester T, Hankeln T. 2006. The amphibian globin gene repertoire as revealed by the Xenopus genome. Cytogenet Genome Res. 112:296-306. (Pubitemid 43260758)
    • (2006) Cytogenetic and Genome Research , vol.112 , Issue.3-4 , pp. 296-306
    • Fuchs, C.1    Burmester, T.2    Hankeln, T.3
  • 19
    • 0034351387 scopus 로고    scopus 로고
    • Likelihood-based tests of topologies in phylogenetics
    • DOI 10.1080/106351500750049752
    • Goldman N, Anderson JP, Rodrigo AG. 2000. Likelihood-based tests of topologies in phylogenetics. Syst Biol. 49:652-670. (Pubitemid 33213083)
    • (2000) Systematic Biology , vol.49 , Issue.4 , pp. 652-670
    • Goldman, N.1    Anderson, J.P.2    Rodrigo, A.G.3
  • 21
    • 0016436505 scopus 로고
    • Darwinian evolution in the genealogy of haemoglobin
    • Goodman M, Moore GW, Matsuda G. 1975. Darwinian evolution in the genealogy of haemoglobin. Nature 253:603-608.
    • (1975) Nature , vol.253 , pp. 603-608
    • Goodman, M.1    Moore, G.W.2    Matsuda, G.3
  • 24
    • 0032052216 scopus 로고    scopus 로고
    • Hemoglobins from bacteria to man: Evolution of different patterns of gene expression
    • Hardison R. 1998. Hemoglobins from bacteria to man: Evolution of different patterns of gene expression. J Exp Biol. 201: 1099-1117. (Pubitemid 28278316)
    • (1998) Journal of Experimental Biology , vol.201 , Issue.8 , pp. 1099-1117
    • Hardison, R.1
  • 25
    • 22144452139 scopus 로고    scopus 로고
    • Hox clusters as models for vertebrate genome evolution
    • DOI 10.1016/j.tig.2005.06.004, PII S0168952505001654
    • Hoegg S, Meyer A. 2005. Hox clusters as models for vertebrate genome evolution. Trends Genet. 21:421-424. (Pubitemid 40981787)
    • (2005) Trends in Genetics , vol.21 , Issue.8 , pp. 421-424
    • Hoegg, S.1    Meyer, A.2
  • 26
    • 77956272960 scopus 로고    scopus 로고
    • Gene cooption and convergent evolution of oxygen transport hemoglobins in jawed and jawless vertebrates
    • Hoffmann FG, Opazo JC, Storz JF. 2010. Gene cooption and convergent evolution of oxygen transport hemoglobins in jawed and jawless vertebrates. Proc Natl Acad Sci U S A. 107:14274-14279.
    • (2010) Proc Natl Acad Sci U S A. , vol.107 , pp. 14274-14279
    • Hoffmann, F.G.1    Opazo, J.C.2    Storz, J.F.3
  • 27
    • 84856397079 scopus 로고    scopus 로고
    • Differential loss and retention of cytoglobin, myoglobin, and globin-E during the radiation of vertebrates
    • Hoffmann FG, Opazo JC, Storz JF. 2011. Differential loss and retention of cytoglobin, myoglobin, and globin-E during the radiation of vertebrates. Genome Biol Evol. 3:588-600.
    • (2011) Genome Biol Evol. , vol.3 , pp. 588-600
    • Hoffmann, F.G.1    Opazo, J.C.2    Storz, J.F.3
  • 28
    • 77951546469 scopus 로고    scopus 로고
    • Lineage-specific patterns of functional diversification in the a- and b-globin gene families of tetrapod vertebrates
    • Hoffmann FG, Storz JF, Gorr TA, Opazo JC. 2010. Lineage-specific patterns of functional diversification in the a- and b-globin gene families of tetrapod vertebrates. Mol Biol Evol. 27: 1126-1138.
    • (2010) Mol Biol Evol. , vol.27 , pp. 1126-1138
    • Hoffmann, F.G.1    Storz, J.F.2    Gorr, T.A.3    Opazo, J.C.4
  • 32
    • 13444259388 scopus 로고    scopus 로고
    • Treefinder: A powerful graphical analysis environment for molecular phylogenetics
    • Jobb G, von Haeseler A, Strimmer K. 2004. Treefinder: A powerful graphical analysis environment for molecular phylogenetics. BMC Evol Biol. 4:18.
    • (2004) BMC Evol Biol. , vol.4 , pp. 18
    • Jobb, G.1    Von Haeseler, A.2    Strimmer, K.3
  • 35
    • 68149176813 scopus 로고    scopus 로고
    • Evolution of gene function and regulatory control after wholegenome duplication: Comparative analyses in vertebrates
    • Kassahn KS, Dang VT, Wilkins SJ, Perkins AC, Ragan MA. 2009.Evolution of gene function and regulatory control after wholegenome duplication: Comparative analyses in vertebrates. Genome Res. 19:1404-1418.
    • (2009) Genome Res. , vol.19 , pp. 1404-1418
    • Kassahn, K.S.1    Dang, V.T.2    Wilkins, S.J.3    Perkins, A.C.4    Ragan, M.A.5
  • 36
    • 45949107473 scopus 로고    scopus 로고
    • Recent developments in the MAFFT multiple sequence alignment program
    • DOI 10.1093/bib/bbn013, Special Issue: Critical Technologies for Bioinformatics
    • Katoh K, Toh H. 2008. Recent developments in the Mafft multiple sequence alignment program. Brief Bioinform. 9:286-298. (Pubitemid 351890825)
    • (2008) Briefings in Bioinformatics , vol.9 , Issue.4 , pp. 286-298
    • Katoh, K.1    Toh, H.2
  • 37
    • 0035816696 scopus 로고    scopus 로고
    • Characterization of a stellate cell activation-Associated protein (STAP) with peroxidase activity found in rat hepatic stellate cells
    • Kawada N, Kristensen DB, Asahina K, Nakatani K, Minamiyama Y, Seki S, Yoshizato K. 2001. Characterization of a stellate cell activation-Associated protein (STAP) with peroxidase activity found in rat hepatic stellate cells. J Biol Chem. 276:25318-25323.
    • (2001) J Biol Chem. , vol.276 , pp. 25318-25323
    • Kawada, N.1    Kristensen, D.B.2    Asahina, K.3    Nakatani, K.4    Minamiyama, Y.5    Seki, S.6    Yoshizato, K.7
  • 39
    • 0036613237 scopus 로고    scopus 로고
    • Extensive genomic duplication during early chordate evolution
    • McLysaght A, Hokamp K, Wolfe KH. 2002. Extensive genomic duplication during early chordate evolution. Nat Genet. 31:200-204.
    • (2002) Nat Genet. , vol.31 , pp. 200-204
    • McLysaght, A.1    Hokamp, K.2    Wolfe, K.H.3
  • 40
    • 0032518271 scopus 로고    scopus 로고
    • Hox gene variation and evolution
    • Meyer A. 1998. Hox gene variation and evolution. Nature 391:225,227-228
    • (1998) Nature , vol.391 , Issue.225 , pp. 227-228
    • Meyer, A.1
  • 41
    • 0032733930 scopus 로고    scopus 로고
    • Gene and genome duplications in vertebrates: The one-To-four (-To-eight in fish) rule and the evolution of novel gene functions
    • Meyer A, Schartl M. 1999. Gene and genome duplications in vertebrates: The one-To-four (-To-eight in fish) rule and the evolution of novel gene functions. Curr Opin Cell Biol. 11:699-704.
    • (1999) Curr Opin Cell Biol. , vol.11 , pp. 699-704
    • Meyer, A.1    Schartl, M.2
  • 42
    • 26244444380 scopus 로고    scopus 로고
    • From 2R to 3R: Evidence for a fish-specific genome duplication (FSGD)
    • DOI 10.1002/bies.20293
    • Meyer A, Van de Peer Y. 2005. From 2R to 3R: Evidence for a fishspecific genome duplication (FSGD). Bioessays 27:937-945. (Pubitemid 41415948)
    • (2005) BioEssays , vol.27 , Issue.9 , pp. 937-945
    • Meyer, A.1    Van De Peer, Y.2
  • 46
    • 0031828161 scopus 로고    scopus 로고
    • Ancient large-scale genome duplications: Phylogenetic and linkage analyses shed light on chordate genome evolution
    • Pébusque MJ, Coulier F, Birnbaum D, Pontarotti P. 1998. Ancient large-scale genome duplications: Phylogenetic and linkage analyses shed light on chordate genome evolution. Mol Biol Evol. 15:1145-1159. (Pubitemid 28394950)
    • (1998) Molecular Biology and Evolution , vol.15 , Issue.9 , pp. 1145-1159
    • Pebusque, M.-J.1    Coulier, F.2    Birnbaum, D.3    Pontarotti, P.4
  • 49
    • 10344243985 scopus 로고    scopus 로고
    • A globin gene of ancient evolutionary origin in lower vertebrates: Evidence for two distinct globin families in animals
    • DOI 10.1093/molbev/msh258
    • Roesner A, Fuchs C, Hankeln T, Burmester T. 2005. A globin gene of ancient evolutionary origin in lower vertebrates: Evidence for two distinct globin families in animals. Mol Biol Evol. 22:12-20. (Pubitemid 39628539)
    • (2005) Molecular Biology and Evolution , vol.22 , Issue.1 , pp. 12-20
    • Roesner, A.1    Fuchs, C.2    Hankeln, T.3    Burmester, T.4
  • 50
    • 0041386108 scopus 로고    scopus 로고
    • MrBayes 3: Bayesian phylogenetic inference under mixed models
    • DOI 10.1093/bioinformatics/btg180
    • Ronquist F, Huelsenbeck JP. 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19:1572-1574. (Pubitemid 37038874)
    • (2003) Bioinformatics , vol.19 , Issue.12 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 51
    • 67649807765 scopus 로고    scopus 로고
    • Temporal pattern of loss/persistence of duplicate genes involved in signal transduction and metabolic pathways after teleost-specific genome duplication
    • Sato Y, Hashiguchi Y, Nishida M. 2009. Temporal pattern of loss/persistence of duplicate genes involved in signal transduction and metabolic pathways after teleost-specific genome duplication. BMC Evol Biol. 9:127.
    • (2009) BMC Evol Biol. , vol.9 , pp. 127
    • Sato, Y.1    Hashiguchi, Y.2    Nishida, M.3
  • 53
    • 79958043184 scopus 로고    scopus 로고
    • Phylogenetic diversification of the globin gene superfamily in chordates
    • Storz JF, Opazo JC, Hoffmann FG. 2011. Phylogenetic diversification of the globin gene superfamily in chordates. IUBMB Life. 63:313-322.
    • (2011) IUBMB Life. , vol.63 , pp. 313-322
    • Storz, J.F.1    Opazo, J.C.2    Hoffmann, F.G.3
  • 54
    • 0001336205 scopus 로고    scopus 로고
    • Phylogenetic inference
    • In: Hillis DM, Moritz C, Mable B, editors., 2nd ed Sunderland (MA): Sinauer Associates.
    • Swofford DL, Olsen GJ, Waddell PJ, Hillis DM. 1996. Phylogenetic inference. In: Hillis DM, Moritz C, Mable B, editors. Molecular systematics, 2nd ed. Sunderland (MA): Sinauer Associates. p. 407-514.
    • (1996) Molecular Systematics , pp. 407-514
    • Swofford, D.L.1    Olsen, G.J.2    Waddell, P.J.3    Hillis, D.M.4
  • 55
    • 0032964297 scopus 로고    scopus 로고
    • BLAST 2 SEQUENCES, a new tool for comparing protein and nucleotide sequences
    • DOI 10.1016/S0378-1097(99)00149-4, PII S0378109799001494
    • Tatusova TA, Madden TL. 1999. BLAST 2 sequences, a new tool for comparing protein and nucleotide sequences. FEMS Microbiol Lett. 174:247-250. (Pubitemid 29217013)
    • (1999) FEMS Microbiology Letters , vol.174 , Issue.2 , pp. 247-250
    • Tatusova, T.A.1    Madden, T.L.2
  • 56
    • 0037351989 scopus 로고    scopus 로고
    • Genome duplication, a trait shared by 22,000 species of ray-finned fish
    • DOI 10.1101/gr.640303
    • Taylor JS, Braasch I, Frickey T, Meyer A, Van de Peer Y. 2003. Genome duplication, a trait shared by 22,000 species of rayfinned fish. Genome Res. 13:382-390. (Pubitemid 36395395)
    • (2003) Genome Research , vol.13 , Issue.3 , pp. 382-390
    • Taylor, J.S.1    Braasch, I.2    Frickey, T.3    Meyer, A.4    Van de Peer, Y.5
  • 57
    • 0037205447 scopus 로고    scopus 로고
    • A ubiquitously expressed human hexacoordinate hemoglobin
    • DOI 10.1074/jbc.M201934200
    • Trent JT III, Hargrove MS. 2002. A ubiquitously expressed human hexacoordinate hemoglobin. J Biol Chem. 277:19538-19545. (Pubitemid 34967466)
    • (2002) Journal of Biological Chemistry , vol.277 , Issue.22 , pp. 19538-19545
    • Trent III, J.T.1    Hargrove, M.S.2
  • 58
    • 70349325524 scopus 로고    scopus 로고
    • The evolutionary significance of ancient genome duplications
    • Van de Peer Y, Maere S, Meyer A. 2009. The evolutionary significance of ancient genome duplications. Nat Rev Genet. 10:725-732.
    • (2009) Nat Rev Genet. , vol.10 , pp. 725-732
    • Van De Peer, Y.1    Maere, S.2    Meyer, A.3
  • 59
    • 59949096873 scopus 로고    scopus 로고
    • EnsemblCompara genetrees: Complete, duplication-Aware phylogenetic trees in vertebrates
    • Vilella AJ, Severin J, Ureta-Vidal A, Heng L, Durbin R, Birney E. 2009. EnsemblCompara genetrees: Complete, duplication-Aware phylogenetic trees in vertebrates. Genome Res. 19:327-335.
    • (2009) Genome Res. , vol.19 , pp. 327-335
    • Vilella, A.J.1    Severin, J.2    Ureta-Vidal, A.3    Heng, L.4    Durbin, R.5    Birney, E.6
  • 60
    • 0034786419 scopus 로고    scopus 로고
    • Origin and evolution of the neural crest: A hypothetical reconstruction of its evolutionary history
    • DOI 10.1046/j.1440-169X.2001.00600.x
    • Wada H. 2001. Origin and evolution of the neural crest: A hypothetical reconstruction of its evolutionary history. Dev Growth Differ. 43:509-520. (Pubitemid 32953771)
    • (2001) Development Growth and Differentiation , vol.43 , Issue.5 , pp. 509-520
    • Wada, H.1
  • 61
    • 33646918601 scopus 로고    scopus 로고
    • Genome duplications of early vertebrates as a possible chronicle of the evolutionary history of the neural crest
    • Wada H, Makabe K. 2006. Genome duplications of early vertebrates as a possible chronicle of the evolutionary history of the neural crest. Int J Biol Sci. 2:133-141. (Pubitemid 43793975)
    • (2006) International Journal of Biological Sciences , vol.2 , Issue.3 , pp. 133-141
    • Wada, H.1    Makabe, K.2
  • 62
    • 61649102674 scopus 로고    scopus 로고
    • CHSminer: A GUI tool to identify chromosomal homologous segments
    • Wang Z, Ding G, Yu Z, Liu L, Li Y. 2009. CHSminer: A GUI tool to identify chromosomal homologous segments. Algorithms Mol Biol. 4:2.
    • (2009) Algorithms Mol Biol. , vol.4 , pp. 2
    • Wang, Z.1    Ding, G.2    Yu, Z.3    Liu, L.4    Li, Y.5
  • 63
    • 53449101955 scopus 로고    scopus 로고
    • Genome duplication and the origin of the vertebrate skeleton
    • Zhang G, Cohn MJ. 2008. Genome duplication and the origin of the vertebrate skeleton. Curr Opin Genet Dev. 18:387-393.
    • (2008) Curr Opin Genet Dev. , vol.18 , pp. 387-393
    • Zhang, G.1    Cohn, M.J.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.