Characterization of embryonic globin genes of the zebrafish

Developmental Biology

Volumn 255, Issue 1, 2003, Pages 48-61

  Brownlie, Alison ^a   Hersey, Candace ^a   Oates, Andrew C ^b   Paw, Barry H ^a,c   Falick, Arnold M ^d   Witkowska, H Ewa ^d,e   Flint, Jonathan ^f   Higgs, Doug ^f   Jessen, Jason ^g   Bahary, Nathan ^a   Zhu, Hao ^a   Lin, Shuo ^g,h   Zon, Leonard ^a,c  

^a BOSTON CHILDREN S HOSPITAL   (United States)

^b ROYAL MELBOURNE HOSPITAL   (Australia)

^c HOWARD HUGHES MEDICAL INSTITUTE   (United States)

^d APPLIED BIOSYSTEMS   (United States)

^e CHILDREN S HOSPITAL OAKLAND RESEARCH INSTITUTE   (United States)

^f UNIVERSITY OF OXFORD   (United Kingdom)

^g MEDICAL COLLEGE OF GEORGIA   (United States)

^h UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

Globin; Hematopoiesis; Thalassemia; Zebrafish

Indexed keywords

HEMOGLOBIN CHAIN;

ANIMAL EXPERIMENT; ANIMAL TISSUE; ARTICLE; CONTROLLED STUDY; CONVALESCENCE; DEVELOPMENTAL STAGE; DOWN REGULATION; EMBRYO; EMBRYO DEVELOPMENT; ENZYME DEFECT; EVALUATION; EXPERIMENTAL MODEL; GENE; GENE CLUSTER; GENE ISOLATION; GENE LINKAGE GROUP; GENE LOCATION; GENE LOCUS; GENE MAPPING; GENE MUTATION; GENE SWITCHING; GENETIC CORRELATION; GENETIC TRAIT; GLOBIN GENE; HEMATOPOIESIS; HEMOGLOBIN SYNTHESIS; IRON DEFICIENCY ANEMIA; MASS SPECTROMETRY; NONHUMAN; PRIORITY JOURNAL; PROTEIN EXPRESSION; ZEBRA FISH; ZINFANDEL GENE;

DANIO RERIO;

EID: 0037334410     PISSN: 00121606     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0012-1606(02)00041-6     Document Type: Article

References (52)

1. Brownlie A., Donovan A., Pratt S.J., Paw B.H., Oates A.C., Brugnara C., Witkowska H.E., Sassa S., Zon L.I. Positional cloning of the zebrafish sauternes gene a model for congenital sideroblastic anaemia . Nat. Genet. 20:1998;244-250.
2. Brownlie A., Zon L.I. The zebrafish as a new model system for the study of hematopoiesis. Bioscience. 49:1999;382-392.
3. Brunori M. Molecular adaptation to physiological requirements the hemoglobin system of trout . Curr. Top. Cell Regul. 9:1975;1-39.
4. Chan F.Y., Robinson J., Brownlie A., Shivdasani R.A., Donovan A., Brugnara C., Kim J., Lau B.C., Witkowska H.E., Zon L.I. Characterization of adult alpha- and beta-globin genes in the zebrafish. Blood. 89:1997;688-700.
5. Coates M.L. Hemoglobin function in the vertebrates an evolutionary model . J. Mol. Evol. 6:1975;285-307.
6. De Witt W., Ingram V.M. Acetylated peptide chains in bullfrog hemoglobins. Biochem. Biophys. Res. Commun. 27:1967;236-241.
7. Detrich H.W. 3rd, Kieran M.W., Chan F.Y., Barone L.M., Yee K., Rundstadler J.A., Pratt S., Ransom D., Zon L.I. Intraembryonic hematopoietic cell migration during vertebrate development. Proc. Natl. Acad. Sci. USA. 92:1995;10713-10717.
8. Dodgson J.B., Strommer J., Engel J.D. Isolation of the chicken beta-globin gene and a linked embryonic beta-like globin gene from a chicken DNA recombinant library. Cell. 17:1979;879-887.
9. Efstratiadis A., Posakony J.W., Maniatis T., Lawn R.M., O'Connell C., Spritz R.A., DeRiel J.K., Forget B.G., Weissman S.M., Slightom J.L., Blechl A.E., Smithies O., Baralle F.E., Shoulders C.C., Proudfoot N.J. The structure and evolution of the human beta-globin gene family. Cell. 21:1980;653-668.
10. Engel J.D., Dodgson J.B. Analysis of the closely linked adult chicken alpha-globin genes in recombinant DNAs. Proc. Natl. Acad. Sci. USA. 77:1980;2596-2600.
11. Frohman M.A., Dush M.K., Martin G.R. Rapid production of full-length cDNAs from rare transcripts amplification using a single gene-specific oligonucleotide primer . Proc. Natl. Acad. Sci. USA. 85:1988;8998-9002.
12. Goodman M., Moore G.W., Matsuda G. Darwinian evolution in the genealogy of haemoglobin. Nature. 253:1975;603-608.
13. Haffter P., Granato M., Brand M., Mullins M.C., Hammerschmidt M., Kane D.A., Odenthal J., van Eeden F.J., Jiang Y.J., Heisenberg C.P., Kelsh R.N., Furutani-Seiki M., Vogelsang E., Beuchle D., Schach U., Fabian C., Nusslein-Volhard C. The identification of genes with unique and essential functions in the development of the zebrafish, Danio rerio. Development. 123:1996;1-36.
14. Hartley S.E., Horne M.T. Chromosome relationships in the genus Salmo. Chromosoma. 90:1984;229-237.
15. Higgs D.R., Vickers M.A., Wilkie A.O., Pretorius I.M., Jarman A.P., Weatherall D.J. A review of the molecular genetics of the human alpha-globin gene cluster. Blood. 73:1989;1081-1104.
16. Hosbach H.A., Wyler T., Weber R. The Xenopus laevis globin gene family chromosomal arrangement and gene structure . Cell. 32:1983;45-53.
17. Iuchi I. Chemical and physiological properties of the larval and the adult hemoglobins in rainbow trout, Salmo gairdnerii irideus. Comp. Biochem. Physiol. B. 44:1973;1087-1101.
18. Iuchi I. The post-hatching transition of erythrocytes from larval to adult type in the rainbow trout, Salmo gairdnerii irideus. J. Exp. Zool. 184:1973;383-396.
19. Iuchi I. Cellular and molecular bases of the larval-adult shift of hemoglobins in fish. Zool. Sci. 2:1985;11-23.
20. Jeffreys A.J., Wilson V., Wood D., Simons J.P., Kay R.M., Williams J.G. Linkage of adult alpha- and beta-globin genes in X. laevis and gene duplication by tetraploidization. Cell. 21:1980;555-564.
21. Johnson K.R., Wright J.E. Jr., May B. Linkage relationships reflecting ancestral tetraploidy in salmonid fish. Genetics. 116:1987;579-591.
22. Kasten-Jolly J., Abraham E.C. Human fetal hemoglobin synthesis and its NH2-terminal acetylation in a rabbit reticulocyte lysate translational system. Biochim. Biophys. Acta. 866:1986;125-134.
23. Kasten-Jolly J., Taketa F. The amino terminal acetylation of cat globin chains and their tryptic peptides. Life Sci. 35:1984;1623-1632.
24. Kimmel C.B., Ballard W.W., Kimmel S.R., Ullmann B., Schilling T.F. Stages of embryonic development of the zebrafish. Dev. Dyn. 203:1995;253-310.
25. Larhammar D., Risinger C. Molecular genetic aspects of tetraploidy in the common carp Cyprinus carpio. Mol. Phylogenet. Evol. 3:1994;59-68.
26. Lauer J., Shen C.K., Maniatis T. The chromosomal arrangement of human alpha-like globin genes sequence homology and alpha-globin gene deletions . Cell. 20:1980;119-130.
27. Leonard M., Brice M., Engel J.D., Papayannopoulou T. Dynamics of GATA transcription factor expression during erythroid differentiation. Blood. 82:1993;1071-1079.
28. Maniatis T., Fritsch E.F., Lauer J., Lawn R.M. The molecular genetics of human hemoglobins. Annu. Rev. Genet. 14:1980;145-178.
29. McMorrow T., Wagner A., Deryckere F., Gannon F. Structural organization and sequence analysis of the globin locus in Atlantic salmon. DNA Cell Biol. 15:1996;407-414.
30. McMorrow T., Wagner A., Harte T., Gannon F. Sequence analysis and tissue expression of a non-Bohr beta-globin cDNA from Atlantic salmon. Gene. 189:1997;183-188.
31. Miyata M., Aoki T. Head-to-head linkage of carp alpha- and beta-globin genes. Biochim. Biophys. Acta. 1354:1997;127-133.
32. Moss B.A., Thompson E.O. Adult fowl haemoglobin and its acetylation. Biochim. Biophys. Acta. 188:1969;348-350.
33. Oates A.C., Brownlie A., Pratt S.J., Irvine D.V., Liao E.C., Paw B.H., Dorian K.J., Johnson S.L., Postlethwait J.H., Zon L.I., Wilks A.F. Gene duplication of zebrafish JAK2 homologs is accompanied by divergent embryonic expression patterns only jak2a is expressed during erythropoiesis . Blood. 94:1999;2622-2636.
34. Patient R.K., Elkington J.A., Kay R.M., Williams J.G. Internal organization of the major adult alpha- and beta-globin genes of X. laevis. Cell. 21:1980;565-573.
35. Pelster B., Burggren W.W. Disruption of hemoglobin oxygen transport does not impact oxygen-dependent physiological processes in developing embryos of zebra fish (Danio rerio). Circ. Res. 79:1996;358-362.
36. Perkins A.C., Peterson K.R., Stamatoyannopoulos G., Witkowska H.E., Orkin S.H. Fetal expression of a human Aγ globin transgene rescues globin chain imbalance but not hemolysis in EKLF null mouse embryos. Blood. 95:2000;1827-1833.
37. Perutz M.F., Muirhead H., Mazzarella L., Crowther R.A., Greer J., Kilmartin J.V. Identification of residues responsible for the alkaline Bohr effect in haemoglobin. Nature. 222:1969;1240-1243.
38. Perutz M.F., Rossmann M.G., Cullis A.F.H.M., Will G., North A.C.T. Structure of haemoglobin. Nature. 185:1960;416-422.
39. Postlethwait J.H., Yan Y.L., Gates M.A., Horne S., Amores A., Brownlie A., Donovan A., Egan E.S., Force A., Gong Z., Goutel C., Fritz A., Kelsh R., Knapik E., Liao E., Paw B., Ransom D., Singer A., Thomson M., Abduljabbar T.S., Yelick P., Beier D., Joly J.S., Larhammar D., Rosa F., et al. Vertebrate genome evolution and the zebrafish gene map. Nat. Genet. 18:1998;345-349.
40. Powers D.A., Edmundson A.B. Multiple hemoglobins of catostomid fish. I. Isolation and characterization of the isohemoglobins from Catostomus clarkii. J. Biol. Chem. 247:1972;6686-6693.
41. Ransom D.G., Haffter P., Odenthal J., Brownlie A., Vogelsang E., Kelsh R.N., Brand M., van Eeden F.J., Furutani-Seiki M., Granato M., Hammerschmidt M., Heisenberg C.P., Jiang Y.J., Kane D.A., Mullins M.C., Nusslein-Volhard C. Characterization of zebrafish mutants with defects in embryonic hematopoiesis. Development. 123:1996;311-319.
42. Riggs A. Colloquium on Oxygen and Physiological Function. 1977;Professional Information Library, Dallas.
43. Roninson I.B., Ingram V.M. Gene evolution in the chicken beta-globin cluster. Cell. 28:1982;515-521.
44. Scheepens A., Mould R., Hofmann O., Brittain T. Some effects of post-translational N-terminal acetylation of the human embryonic zeta globin protein. Biochem. J. 310:1995;597-600.
45. Shih D.T., Luisi B.F., Miyazaki G., Perutz M.F., Nagai K. A mutagenic study of the allosteric linkage of His(HC3)146 beta in haemoglobin. J. Mol. Biol. 230:1993;1291-1296.
46. Thompson M.A., Ransom D.G., Pratt S.J., MacLennan H., Kieran M.W., Detrich H.W. 3rd, Vail B., Huber T.L., Paw B., Brownlie A.J., Oates A.C., Fritz A., Gates M.A., Amores A., Bahary N., Talbot W.S., Her H., Beier D.R., Postlethwait J.H., Zon L.I. The cloche and spadetail genes differentially affect hematopoiesis and vasculogenesis. Dev. Biol. 197:1998;248-269.
47. Wagner A., Deryckere F., McMorrow T., Gannon F. Tail-to-tail orientation of the Atlantic salmon alpha- and beta-globin genes. J. Mol. Evol. 38:1994;28-35.
48. Weinstein B.M., Schier A.F., Abdelilah S., Malicki J., Solnica-Krezel L., Stemple D.L., Stainier D.Y.R., Zwartkruis F., Driever W., Fishman M.C. Hematopoietic mutations in the zebrafish. Development. 123:1996;303-309.
49. Westerfield, M. (1989). The Zebrafish Book: A Guide for the Laboratory Use of zebrafish (Brachydanio rerio), University of Oregon Press, Eugene.
50. Wilkens N.P. Ontogeny and evolution of salmonid hemoglobins. Int. Rev. Cytol. 94:1985;269-298.
51. Wittbrodt J., Meyer A., Schartl M. More genes in fish? Bioessays. 20:1998;511-514.
52. Zhang J., Talbot W.S., Schier A.F. Positional cloning identifies zebrafish one-eyed pinhead as a permissive EGF-related ligand required during gastrulation. Cell. 92:1998;241-251.