Genome duplications of early vertebrates as a possible chronicle of the evolutionary history of the neural crest

International Journal of Biological Sciences

Volumn 2, Issue 3, 2006, Pages 133-141

  Wada, Hiroshi ^a   Makabe, Kaz ^b  

^a UNIVERSITY OF TSUKUBA   (Japan)

^b UNIVERSITY OF TOKUSHIMA   (Japan)

Author keywords

Evolutionary sequence; Genome duplication; Neural crest; Vertebrates

Indexed keywords

CADHERIN; CELL ADHESION MOLECULE; TRANSCRIPTION FACTOR;

ASCIDIACEA; EMBRYO DEVELOPMENT; EPITHELIUM CELL; EVOLUTION; GENE DUPLICATION; GENOME; HUMAN; MESENCHYME CELL; NEURAL CREST; NONHUMAN; PHYLOGENY; REVIEW; VERTEBRATE;

VERTEBRATA;

EID: 33646918601     PISSN: 14492288     EISSN: None     Source Type: Journal    
DOI: 10.7150/ijbs.2.133     Document Type: Review

References (54)

1. Ohno S. Evolution by gene duplication. New York: Springer-Verlag, 1970.
2. Furlong RF, Holland PWH. Were vertebrate octoploid. Phil Trans R Soc Lond B 2002; 357: 531-544.
3. Gans C, Northcutt RG. Neural crest and the origin of vertebrates: a new head. Science 1983; 220: 268-274.
4. Jeffery WR, Strickier AG, Yamamoto Y. Migratory neural crest-like cells form body pigmentation in a urochordate embryo. Nature 2004; 431: 696-699.
5. Holland ND, Panganiban G, Henyey EL, Holland LZ. Sequence and developmental expression of AmphiDll, an amphioxus Distal-less gene transcribed in the ectoderm, epidermis and nervous system: insights into evolution of craniate forebrain and neural crest. Development 1996; 122: 2911-2920.
6. Wada H, Holland PWH, Sato S, Yamamoto H, Satoh N. Neural tube is partially dorsalized by overexpression of HrPax-37: the ascidian homologue of Pax-3 and Pax-7. Dev Biol 1997; 187: 240-252.
7. Wada H. Origin and evolution of the neural crest: a hypothetical reconstruction of its evolutionary history. Dev Growth Differ 2001; 43: 509-520.
8. Shimeld SM. The evolution of the hedgehog gene family in chordates: insights from amphioxus hedgehog. Dev Genes Evol 1999; 209: 40-47.
9. Meulemans D, Bronner-Fraser M. Gene-regulatory interactions in neural crest evolution and development. Dev Cell 2004; 7: 291-299.
10. Liem KFJ, Tremml G, Roelink H, Jessel TM. Dorsal differentiation of neural plate cells induced by BMP-mediated sugnals from epidermal ectoderm. Cell 1995; 82: 969-979.
11. -/- mutant mice. Development 1996; 122: 831-838.
12. Holland LZ, Schubert M, Kozmik Z, Holland ND. AmphiPax3/7, an amphioxus paired box gene: insights into chordate myogenesis, neurogenesis, and the possible evolutionary precursor of definitive vertebrate neural crest. Evol Dev 1999; 1: 153-165.
13. Hill RE et al. A new family of mouse homeo box-containing genes: molecular structure, chromosomal location, and developmental expression of Hox-7.1. Genes Gev 1989; 3: 26-37.
14. Robert B, Sassoon D, Jacq B, Gehring W, Buckingham M. Hox-7, a mouse homeobox gene with a novel pattern of expression during embryogenesis. EMBO J 1989; 8: 91-100.
15. MacKenzie A, Ferguson MW, Sharpe PT. Hox-7 expression during murine craniofacial development. Development 1991; 113: 601-611.
16. MacKenzie A, Ferguson MW, Sharpe PT. Expression patterns of the homeobox gene, Hox-8, in the mouse embryo suggest a role in specifying tooth initiation and shape. Development 1992; 115: 403-420.
17. Shimeld SM, MaKay IJ, Sharp PT. Th emurine homeobox gene Msx-3 hows highly restricted expression in the developing neural tube. Mech Dev 1996; 55: 201-210.
18. Sharman AC, Shimeld SM, Holland PWH. An amphioxus Msx gene expressed predominantly in the dorsal neural tube. Dev Genes Evol 1999; 209: 260-263.
19. Aniello F, et al. Identification and developmental expression of Ci-msxb: a novel homologue of Drosophila msh gene in Ciona intestinalis. Mech Dev 1999; 88: 123-126.
20. Nakata K, Koyabu Y, Aruga J, Mikoshiba K. A novel member of Xenopus Zic family, Zic5, mediates neural crest development. Mech Dev 2000;99: 83-91.
21. Imai KS, Hino K, Yagi K, Satoh N, Satou Y. Gene expression profiles of transcription factors and signaling molecules in the Ciona intestinalis embryo. Development 2004; 131: 4047-4058.
22. Wada S, Saiga H. HrzicN, a new Zic family gene of ascidians, plays essential roles in the neural tube and notochord development. Development 2002; 129: 5597-5608.
23. Gostling NJ, Shimeld SM. Protochordate Zic genes define primitive somite compartments and highlight molecular changes underlying neural crest evolution. Evol Dev 2003; 5: 136-144.
24. Satou Y et al. macho-1-related genes in Ciona embryos. Dev Genes Evol 2002; 212: 87-92.
25. Panganiban G, Rubenstein JLR. Developmental functions of the Distal-less/Dlx homeobox genes. Development 2002; 129: 4371-4386.
26. Stock DW, et al. The evolution of the vertebrate Dlx gene family. Proc Natl Acad Sci USA 1996; 93: 10858-10863.
27. Caracciolo A, Gregorio AD, Aniello F, DiLauro R, Branno M. Identification and developmental expression of three Distal-less homeobox containing genes in the ascidian Ciona intestinalis. Mech Dev 2000; 99: 173-176.
28. Imai KS, Hino K, Yagi K, Satoh N, Satou Y. Gene expression profiles of transcription factors and signaling molecules in the Ciona intestinalis embryo. Development 2004; 131: 4047-4058.
29. Sefton M, Sanchez S, Nieto MA. Conserved and divergent roles for members of the Snail family of transcription factors in the chick and mouse embryo. Development 1998; 125: 3111-3121.
30. Linker C, Bronner-Fraser M, Mayor R. Relationship between Gene Expression Domains of Xsnail, Xslug, and Xtwist and Cell Movement in the Prospective Neural Crest of Xenopus. Dev Biol 2000; 224: 215-225.
31. Langeland J, Tomsa JM, Jackman WR, Kimmel CB. An amphioxus snail gene: Expression in paraxial mesoderm and neural plate suggests a conserved role in patterning the chordate embryo. Dev Genes Evol 1998; 208: 569-577.
32. Wada S, Saiga H. Cloning and embryonic expression of Hrsna, a snail family gene of the ascidian Halocynthia roretzi: implication in the origins of mechanisms for mesoderm specification and body axis formation in chordates. Dev Growth Differ 1999; 41: 9-18.
33. Corbo JC, Erives A, DiGregorio A, Chang A, Levine M. Dorsoventral patterning of the vertebrate neural tube is conserved in a protochordate. Development 1997; 124: 2335-2344.
34. Hilger-Eversheim K, Moser M, Schorle H, Buettner R. Regulatory roles of AP-2 transcription factors in vertebrate development, apoptosis and cell-cycle control. Gene 2000; 260: 1-12.
35. Meulemans D, Bronner-Fraser M. Amphioxus and lamprey AP-2 genes: implications for neural crest evolution and migration pattern. Development 2002; 129: 4953-4962.
36. Luo T, Lee YH, Saint-Jeannet JP, Sargent TD. Induction of neural crest in Xenopus by transcription factor AP2a. Proc Natl Acad Sci USA 2003; 100: 532-537.
37. Kaestner KH, Knöchel W, Martínez DE. Unified nomenclature for the winged helix/forkhead transcription factors. Genes Dev 2000;14: 142-146.
38. Imai KS, Satoh N, Satou Y. An essential role of FoxD gene in notochord induction in Ciona embryos. Development 2002; 129: 3441-3453.
39. Yu J, Holland ND, Holland LZ. Tissue-specific expression of FoxD reporter constructs in amphioxus embryos. Dev Biol 2004; 274: 452-461.
40. Kos R, Reedy MV, Johnson RL, Erickson CA. The winged-helix transcription factor FoxD3 is important for establishing the neural crest lineage and repressing melanogenesis in avian embryos. Development 2001; 128: 1467-1479.
41. Sasai N, Mizuseki K, Sasai Y. Requirement of FoxD3-class signaling for neural crest determination in Xenopus. Development 2001; 128: 2525-2536.
42. Nakagawa S, Takeichi M. Neural crest cell-cell adhesion controlled by sequential and subpopulation-specific expression of novel cadherins. Development 1995; 121: 1321-1332.
43. Borchers A, David R, Wedlich D. Xenopus cadherin-11 restrains cranial neural crest migration and influences neural crest specification. Development 2001; 128: 3049-3060.
44. Nakagawa S, Takeichi M. Neural crest emigration from the neural tube depends on regulated cadherin expression. Development 1998; 125: 2963-2971.
45. Nollet F, Kools P, van Roy F. Phylogenetic analysis of the cadherin superfamily allows identification of six major subfamilies besides several solitary members. J Mol Biol 2000; 299: 551-572.
46. Sasakura Y. et al. A genomewide survey of developmentally relevant genes in Ciona intestinalis X. Genes for cell junctions and extracellular matrix. Dev Genes Evol 2003; 213: 303-313.
47. Satou Y. et al. A cDNA resource from the basal chordate Ciona intestinalis. Genesis 2002; 33: 153-154.
48. Imai KS. Isolation and characterization of b-catenin downstream genes in early embryos of the ascidian Ciona savignyi. Differentiation 2003; 71: 346-360.
49. Oda H. et al. A novel amphioxus cadherin that localizes to epithelial adherens junctions has an unusual domain organization with implication for chordate phylogeny. Evol Dev 2002; 4: 426-434.
50. Oda H, Akiyama-Oda Y, Zhang S. Two classic cadherin-related molecules with no cadherin extracellular repeats in the cephalochordate amphioxus: distinct adhesive specificities and possible involvement in the development of multicell-layered structures. J Cell Sci 2003; 117: 2757-2767.
51. Liu J, Jessel TM. A role for rhoB in delamination of neural crest cells from the dorsal neural tube. Development 1998; 125: 5055-5067.
52. Hotta K, Takahashi H, Ueno N, Gojobori T. A genome-wide survey of the genes for planar polarity signaling or convergent extension-related genes in Ciona intestinalis and phylogenetic comparisons of evolutionary conserved signaling components. Gene 2003; 317: 165-185.
53. Dottori M, Gross MK, Labosky P, Goulding M. The winged-helix transcription factor Foxd3 suppresses interneuron differentiation and promotes neural crest cell fate. Development 2001;128: 4127-4138.
54. Strimmer K, von Haeseler A. Qualtet puzzling: a quartet maximum likelihood method for reconstructing tree topologies. Mol Biol Evol 1996; 13: 964-969.