Construction of a High-Density Microsatellite Genetic Linkage Map and Mapping of Sexual and Growth-Related Traits in Half-Smooth Tongue Sole (Cynoglossus semilaevis)

PLoS ONE

Volumn 7, Issue 12, 2012, Pages

  Song, Wentao ^a,b   Li, Yangzhen ^a,c   Zhao, Yongwei ^a   Liu, Yang ^a,c   Niu, Yuze ^a,c   Pang, Renyi ^a   Miao, Guidong ^a   Liao, Xiaolin ^a   Shao, Changwei ^a   Gao, Fengtao ^a   Chen, Songlin ^a  

^a YELLOW SEA FISHERIES RESEARCH INSTITUTE   (China)

^b Weihai Vocational College   (China)

^c SHANGHAI OCEAN UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BODY WEIGHT; CONSENSUS SEQUENCE; CONTROLLED STUDY; CYNOGLOSSUS SEMILAEVIS; FEMALE; GENE CONSTRUCT; GENE LOCUS; GENE MAPPING; GENE SEGREGATION; GENETIC LINKAGE; GENETIC RECOMBINATION; GENETIC VARIABILITY; HUMAN; LINKAGE ANALYSIS; MALE; MARINE SPECIES; MICROSATELLITE MARKER; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; QUANTITATIVE TRAIT LOCUS; QUANTITATIVE TRAIT LOCUS MAPPING; SIMPLE SEQUENCE REPEAT; UNINDEXED SEQUENCE;

ANIMALS; CHROMOSOME MAPPING; FEMALE; FISHES; GENETIC LINKAGE; GENETIC MARKERS; LOD SCORE; MALE; MICROSATELLITE REPEATS; MOLECULAR SEQUENCE DATA; PHYSICAL CHROMOSOME MAPPING; QUANTITATIVE TRAIT LOCI; QUANTITATIVE TRAIT, HERITABLE; RECOMBINATION, GENETIC;

CYNOGLOSSIDAE; CYNOGLOSSUS SEMILAEVIS;

EID: 84871432298     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0052097     Document Type: Article

References (68)

1. Gilbey J, Verspoor E, McLay A, Houlihan D, (2004) A microsatellite linkage map for Atlantic salmon (Salmo salar). Animal Genetics 35(2): 98-105.
2. Lee BY, Lee WJ, Streelman JT, Carleton KL, Howe AE, et al. (2005) A second-generation genetic linkage map of tilapia (Oreochromis spp.). Genetics 170(1): 237-244.
3. Chistiakov DA, Hellemans B, Haley CS, Law AS, Tsigenopoulos CS, et al. (2005) A microsatellite linkage map of the European sea bass Dicentrarchus labrax L. Genetics. 170(4): 1821-1826.
4. Guyomard R, Mauger S, Tabet-Canale K, Martineau S, Genet C, et al. (2006) A type I and type II microsatellite linkage map of rainbow trout (Oncorhynchus mykiss) with presumptive coverage of all chromosome arms. BMC Genomics 7: 302.
5. Senger F, Priat C, Hitte C, Sarropoulou E, Franch R, et al. (2006) The first radiation hybrid map of a perch-like fish: the gilthead seabream (Sparus aurata L). Genomics 87(6): 793-800.
6. Wang CM, Zhu ZY, Lo LC, Feng F, Lin G, et al. (2007) A microsatellite linkage map of Barramundi, Lates calcarifer. Genetics 175(2): 907-915.
7. Kucuktas H, Wang S, Li P, He C, Xu P, et al. (2009) Construction of genetic linkage maps and comparative genome analysis of catfish using gene-associated markers. Genetics 181(4): 1649-1660.
8. Xia JH, Feng L, Zhu ZY, Fu JJ, Feng JB, et al. (2010) A consensus linkage map of the grass carp (Ctenopharyngodon idella) based on microsatellites and SNPs. BMC Genomics 11: 135.
9. Castaño-Sánchez C, Fuji K, Ozaki A, Hasegawa O, Sakamoto T, et al. (2010) A second generation genetic linkage map of Japanese flounder (Paralichthys olivaceus). BMC Genomics 11: 554.
10. Wang CM, Bai ZY, He XP, Lin Grace, Xia JH, et al. (2011) A high-resolution linkage map for comparative genome analysis and QTL fine mapping in Asian seabass, Lates calcarifer. BMC Genomics 12: 174.
11. Falconer DS, Mackay TFC (1996) Introduction to Quantitative Genetics. Harlow, Essex, UK: Addison Wesley Longman, Fourth 1996.
12. Liu ZJ, Cordes JF, (2004) DNA marker technologies and their applications in aquaculture genetics. Aquaculture 238(1-4): 1-37.
13. Ozaki A, Sakamoto T, Khoo S, Nakamura K, Coimbra M, et al. (2001) Quantitative trait loci (QTLs) associated with resistance/susceptibility to infectious pancreatic necrosis virus (IPNV) in rainbow trout (Oncorhynchus mykiss). Mol Genet Genom 265(1): 23-31.
14. Cnaani A, Hallerman EM, Ron M, Weller JI, Indelman M, et al. (2003) Detection of a chromosomal region with two quantitative trait loci, affecting cold tolerance and fish size, in an F-2 tilapia hybrid. Aquaculture 223(1-4): 117-128.
15. Reid D, Szanto A, Glebe B, Danzmann R, Ferguson M, (2004) QTL for body weight and condition factor in Atlantic salmon (Salmo salar): comparative analysis with rainbow trout (Oncorhynchus mykiss) and Arctic charr (Salvelinus alpinus). Heredity 94(2): 166-172.
16. Fuji K, Kobayashi K, Hasegawa O, Coimbra M, Sakamoto T, et al. (2006) Identification of a single major genetic locus controlling the resistance to lymphocystis disease in Japanese flounder (Paralichthys olivaceus). Aquaculture 254(1-4): 203-210.
17. Tripathi N, Hoffmann M, Willing EM, Lanz C, Weigel D, et al. (2009) Genetic linkage map of the guppy, Poecilia reticulata, and quantitative trait loci analysis of male size and colour variation. Proc Biol Sci 276(1665): 2195-2208.
18. Massault C, Hellemans B, Louro B, Batargias C, Van Houdt JKJ, et al. (2010) QTL for body weight, morphometric traits and stress response in European sea bass Dicentrarchus labrax. Animal Genetics 41: 337-345.
19. Liao XL, Ma HY, Xu GB, Shao CW, Tian YS, et al. (2009) Construction of a genetic linkage map and mapping of a female-specific DNA marker in half-smooth tongue sole (Cynoglossus semilaevis). Mar Biotechnol 11: 699-709.
20. Zhuang ZM, Wu D, Zhang SC, Pang QX, Wang CL, et al. (2006) G-banding patterns of the chromosomes of tonguefish Cynoglossus semilaevis Günther, 1873. J Appl Ichthyol 22: 437-440.
21. Cervantes-Flores JC, Yencho GC, Kriegner A, Pecota KV, Faulk MA, et al. (2008) Development of a genetic linkage map and identification of homologous linkage groups in sweet potato using multiple-dose AFLP markers. Mol Breeding 21: 511-532.
22. Liao XL, Shao CW, Tian YS, Chen SL, (2007) Polymorphic dinucleotide microsatellites in tongue sole (Cynoglossus semilaevis). Mol Ecol Notes 7: 1147-1149.
23. Miao GD, Ma HY, Chen SL, Fan TJ, (2011) Isolation and characterization of 54 ploymorphic microsatellite loci for half-smooth tongue sole, Cynoglossus semilaevis. Journal of the World Aquaculture Society 42(3): 462-467.
24. Sha ZX, Luo XH, Liao XL, Wang SL, Wang QL, et al. (2011) Development and characterization of 60 novel EST-SSR markers in half-smooth tongue sole (Cynoglossus semilaevis). Journal of Fish Biology 78(1): 322-331.
25. Liu YG, Sun XQ, Gao H. Liu LX, (2007) Microsatellite markers from an expressed sequence tag library of half-smooth tongue sole (Cynoglossus semilaevis) and their application in other related fish species. Mol Ecol Notes 7: 1242-1244.
26. Liu YG, Bao BL, Liu LX, Wang L, Lin H, (2008) Isolation and characterization of polymorphic microsatellite loci from RAPD product in half-smooth tongue sole(Cynoglossus semilaevis) and a test of cross-species amplification. Mol Ecol Res 8: 202-204.
27. Wang XB, Zhang QQ, Sun XH, Yin GL, Qi J, et al. (2008) Isolation and characterization of 64 novel microsatellite markers from a fosmid library of female half-smooth tongue sole (Cynoglossus semilaevis). Mol Ecol Res 8: 1303-1306.
28. Zhong QW, Yu Y, Zhang QQ, Wang ZG, Yu HY, et al. (2009) Isolation and characterization of twenty novel microsatellite markers for half-smooth tongue sole (Cynoglossus semilaevis). Conservation Genetics 10: 1617-1620.
29. Chen SL, Li J, Deng SP, Tian YS, Wang QY, et al. (2007) Isolation of female-specific AFLP markers and molecular identification of genetic sex in half-smooth tongue sole (Cynoglossus semilaevis). Mar Biotechnol 9: 273-280.
30. Shao CW, Chen SL, Scheuring CF, Xu JY, Dong XL, et al. (2010) Construction and Characterization of Two Bacterial Artificial Chromosome Libraries of Half-smooth Tongue Sole, Cynoglossus semilaevis, and Isolation of Clones Hybridizing with Female-specific Markers and Sex-related Genes. Mar Biotechnol 12: 558-568.
31. Chen SL, Deng SP, Ma HY, Tian YS, Xu JY, et al. (2008) Molecular marker-assisted sex control in half-smooth tongue sole (Cynoglossus semilaevis). Aquaculture 283: 7-12.
32. Deng SP, Chen SL, Xu JY, Liu BW, (2009) Molecular cloning, characterization and expression analysis of gonadal P450 aromatase in the half-smooth tongue-sole, Cynoglossus semilaevis. Aquaculture 287: 211-218.
33. Chen SL, Tian YS, Yang JF, Shao CW, Ji XS, et al. (2009) Artificial gynogenesis and sex determination in half-smooth tongue sole (Cynoglossus semilaevis). Mar Biotechnol 11: 243-251.
34. Shimoda N, Knapik EW, Ziniti J, Sim C, Yamada E, et al. (1999) Zebrafish genetic map with 2000 microsatellite markers. Genomics 58(3): 219-232.
35. Rexroad CE, Palti Y, Gahr SA, Vallejo RL, (2008) A second generation genetic map for rainbow trout (Oncorhynchus mykiss). BMC Genetics 9: 74.
36. Wang CM, Lo LC, Zhu ZY, Pang HY, Liu HM, et al. (2011) Mapping QTL for an adaptive trait: the length of caudal fin in Lates calcarifer. Mar Biotechnol 13: 74-82.
37. Maliepaard C, Jansen J, Ooijen JW, (1997) Linkage analysis in a full-sib family of an outbreeding plant species: overview and consequences for applications. Genetical Research 70: 237-250.
38. Coimbra M, Kobayashi K, Koretsugu S, Hasegawa O, Ohara E, et al. (2003) A genetic linkage map of the Japanese flounder, Paralichthys olivaceus. Aquaculture 220: 203-218.
39. Kang JH, Kim WJ, Lee WJ, (2008) Genetic linkage map of olive flounder, Paralichthys olivaceus. International Journal of Biological Sciences 4: 143-149.
40. Bouza C, Hermida M, Pardo BG, Fernández C, Fortes GG, et al. (2007) A Microsatellite Genetic Map of the Turbot (Scophthalmus maximus). Genetics 177: 2457-2467.
41. Reid DP, Smith CA, Rommens M, Blanchard B, Martin-Robichaud D, et al. (2007) A genetic linkage map of Atlantic halibut (Hippoglossus hippoglossus). Genetics 177: 1193-1205.
42. Matsuda M, Sato T, Toyazaki Y, Nagahama Y, Hamaguchi S, et al. (2003) Oryzias curvinotus has DMY, a gene that is required for male development in the medaka, O. latipes. Zool Sci 20: 159-161.
43. Felip A, William PY, Wheeler PA, Thorgaard GH, (2005) An AFLP-based approach for the identification of sex-linked markers in rainbow trout (Oncorhynchus mykiss). Aquaculture 247: 35-43.
44. Fuji K, Yoshida K, Hattori K, Ozaki A, Araki K, et al. (2010) Identification of the sex-linked locus in yellowtail, Seriola quinqueradiata. Aquaculture 308: 51-55.
45. Ezaz MT, Harvey SC, Boonphakdee C, Teale AJ, McAndrew, et al, (2004) Isolation and Physical Mapping of Sex-Linked AFLP Markers in Nile Tilapia (Oreochromis niloticus L.). Mar Biotechnol 6: 435-445.
46. Cnaani A, Kocher TD, (2008) Sex-linked markers and microsatellite locus duplication in the cichlid species Oreochromis tanganicae. Biology Letters 4: 700-703.
47. Shikano T, Herczeg G, Merilä J, (2011) Molecular sexing and population genetic inference using a sex-linked microsatellite marker in the nine-spined stickleback (Pungitius pungitius). BMC Research Notes 4: 119.
48. Moen T, Hoyheim B, Munck H, Gomez RL, (2004) A linkage map of Atlantic salmon (Salmo salar) reveals an uncommonly large difference in recombination rate between the sexes. Animal Genetics 35: 81-92.
49. Sakamoto T, Danzmann RG, Gharbi K, (2000) A microsatellite linkage map of rainbow trout (Oncorhynchus mykiss) characterized by large sex-specific differences in recombination rates. Genetics 155: 1331-1345.
50. Kai W, Kikuchi KK, Fujita M, Suetake H, Fujiwara A, et al. (2005) A genetic linkage map for the tiger puffer fish, Takifugu rubripes. Genetics 171: 227-238.
51. Zhang LS, Yang CJ, Zhang Y, Li L, Zhang XM, et al. (2007) A genetic linkage map of Pacific white shrimp (Litopenaeus vannamei): sex-linked microsatellite markers and high recombination rates. Genetica 131: 37-49.
52. Li L, Guo XM, (2004) AFLP-Based Genetic Linkage Maps of the Pacific Oyster Crassostrea gigas Thunberg. Mar Biotechnol 6: 26-36.
53. Liu Z, Karsi A, Li P, Cao D, Dunham R, (2003) An AFLP-based genetic linkage map of channel catfish (Icalurus puncatus) constructed by using an intersecific hybrid resource family. Genetics 165: 687-694.
54. Cheng L, Liu L, Yu X, Wang D, Tong J, (2009) A linkage map of common carp (Cyprinus carpio) based on AFLP and microsatellite markers. Animal Genetics 41: 191-198.
55. Kasha KJ, Kao KN, (1970) High frequency haploid production in barley (Hordeum vulgare L.). Nature 225: 874-876.
56. Zamir D, Tadmor Y, (1986) Unequal segregation of nuclear genes in plants. Bot Gaz 147: 355-358.
57. Faris JD, Laddomada B, Gill BS, (1998) Molecular mapping of segregation distortion loci in Aegilops taushii. Genetics 149: 319-327.
58. Hubert S, Hedgecock D, (2004) Linkage maps of microsatellite DNA markers for the Pacific oyster. Genetics 168: 351-362.
59. Wang WJ, Wang HP, Yao H, Wallat GK, Tiu LG, et al. (2010) A first genetic linkage map of bluegill sunfish (Lepomis macrochirus) using AFLP markers. Aquacult Int 18: 825-835.
60. Silvia RR, Miguel T, Carmen B, Miguel H, Belén P, et al. (2011) QTL detection for Aeromonas salmonicida resistance related traits in turbot (Scophthalmus maximus). BMC Genomics 12: 541.
61. Sambrook J, Russell DW (2001) Molercular Cloning: A Laboratory Mamual, 3rd dition. New York: Cold Spring Harkbor Labroatory Press 2001.
62. Bassam BJ, Caetano-Anolles G, Gresshoff PM, (1991) Fast and sensitive silver staining of DNA in polyacrylamide gels. Analytical Biochemistry 96(1): 80-83.
63. Van Ooijen JW (2006) JoinMap®4, Software for the calculation of genetic linkage maps in experimental populations. Kyazma BV, Wageningen, Netherlands.
64. You EM, Liu KF, Huang SW, Chen M, Groumellec ML, et al. (2010) Construction of integrated genetic linkage maps of the tiger shrimp (Penaeus monodon) using microsatellite and AFLP markers. Animal Genetics 41(4): 365-376.
65. Fishman L, Kelly AJ, Morgan E, Willis JH, (2001) A genetic map in the Mimulus guttatus species complex reveals transmission ratio distortion due to heterospecific interactions. Genetics 159: 1701-1716.
66. Chakravarti A, Lasher LK, Reefer JE, (1991) A maximum likelihood method for estimating genome length using genetic linkage data. Genetics 128: 175-182.
67. Cervera MT, Storme V, Ivens B, Gusmäo J, Liu BH, et al. (2001) Dense genetic linkage maps of three populous species (Populus deltoides, P. nigra and P. trichocarpa) based on AFLP and microsatellite markers. Genetics 158: 787-809.
68. Liao M, Zhang L, Yang G, Zhu M, Wang D, et al. (2007) Development of silver carp (Hypophthalmichthys molitrix) and bighead carp (Aristichthys nobilis) genetic maps using microsatellite and AFLP markers and a pseudo-testcross strategy. Animal Genetics 38: 364-370.