Zebrafish genetic map with 2000 microsatellite markers

Genomics

Volumn 58, Issue 3, 1999, Pages 219-232

  Shimoda, Nobuyoshi ^a   Knapik, Ela W ^a,b   Ziniti, John ^a   Sim, Chäng ^a   Yamada, Erika ^a   Kaplan, Stacy ^a   Jackson, Donald ^a   De Sauvage, Frederic ^c   Jacob, Howard ^d   Fishman, Mark C ^a  

^a MASSACHUSETTS GENERAL HOSPITAL   (United States)

^b INSTITUTE OF EPIDEMIOLOGY   (Germany)

^c GENENTECH INC   (United States)

^d MEDICAL COLLEGE OF WISCONSIN   (United States)

Author keywords

Linkage map; Microsatellite expansion; Microsatellite repeat; Polymorphism; Zebrafish

Indexed keywords

MICROSATELLITE DNA;

ANIMAL CELL; ARTICLE; DNA POLYMORPHISM; EMBRYO; GENE MAPPING; GENE MUTATION; GENETIC DISTANCE; GENETIC LINKAGE; GENETIC SCREENING; GENOTYPE; MARKER GENE; MOLECULAR CLONING; MORPHOGENESIS; MUTATION RATE; NONHUMAN; PRIORITY JOURNAL; YEAST ARTIFICIAL CHROMOSOME; ZEBRA FISH;

ANIMALIA; DANIO RERIO; VERTEBRATA;

EID: 0033564291     PISSN: 08887543     EISSN: None     Source Type: Journal    
DOI: 10.1006/geno.1999.5824     Document Type: Article

References (23)

1. Crawford A. M., Cuthbertson R. P. Mutations in sheep microsatellites. Genome Res. 6:1996;876-879.
2. Daga R. R., Thode G., Amores A. Chromosome complement, C-banding, Ag-NOR and replication banding in the zebrafish Danio rerio. Chromosome Res. 4:1996;29-32.
3. Dib C., Fauré S., Fizames C., Samson D., Drouot N., Vignal A., Millasseau P., Marc S., Hazan J., Seboun E., Lathrop M., Gyapay G., Morissette J., Weissenbach J. A comprehensive genetic map of the human genome based on 5,264 microsatellites. Nature. 380:1996;152-154.
4. Dietrich W. F., Miller J., Steen R., Merchant M. A., Damron-Boles D., Husain Z., Dredge R., Daly M. J., Ingalls K. A., O'Connor T. J., Evans C. A., DeAngelis M. M., Levinson D. M., Kruglyak L., Goodman N., Copeland N. G., Jenkins N. A., Hawkins T. L., Stein L., Page D. C., Lander E. S. A comprehensive genetic map of the mouse genome. Nature. 380:1996;149-152.
5. Driever W., Solnica-Krezel L., Schier A. F., Neuhauss S. C. F., Malicki J., Stemple D. L., Stainier D. Y. R., Zwartkruis F., Abdelilah S., Rangini Z., Belak J., Boggs C. A genetic screen for mutations affecting embryogenesis in zebrafish. Development. 123:1996;37-46.
6. Feldman B., Gates M. A., Egan E. S., Dougan S. T., Rennebeck G., Sirotkin H. I., Schier A. F., Talbot W. S. Zebrafish organizer development and germ-layer formation require nodal-related signals. Nature. 395:1998;181-185.
7. Haffter P., Granato M., Brand M., Mullins M. C., Hammerschmidt M., Kane D. A., Odenthal J., van Eeden F. J. M., Jiang Y.-J., Heisenberg C.-P., Kelsh R. N., Furutani-Seiki M., Vogelsang E., Beuchle D., Schach U., Fabian C., Nüsslein-Volhard C. The identification of genes with unique and essential functions in the development of the zebrafish, Danio rerio. Development. 123:1996;1-36.
8. Izsvák Z., Ivics Z., Garcia-Estefania D., Fahrenkrug S. C., Hackett P. B. DANA elements: A family of composite, tRNA-derived short interspersed DNA elements associated with mutational activities in zebrafish (Danio rerio). Proc. Natl. Acad. Sci. USA. 93:1996;1077-1081.
9. Izsvák Z., Ivics Z., Shimoda N., Mohn D., Okamoto H., Hackett P. B. Short inverted-repeat transposable elements in teleost fish and implications for a mechanism of their amplification. J. Mol. Evol. 1998.
10. Jacob H. J., Brown D. M., Bunker R. K., Daly M. J., Dzau V. J., Goodman A., Koike G., Kren V., Kurtz T., Lernmark Å., Levan G., Mao Y., Pettersson A., Pravenec M., Simon J. S., Szpirer C., Szpirer J., Trolliet M. R., Winer E. S., Lander E. S. A genetic linkage map of the laboratory rat, Rattus norvegicus. Nature Genet. 9:1995;63-69.
11. Johnson S. L., Gates M. A., Johnson M., Talbot W. S., Horne S., Baik K., Rude S., Wong J. R., Postlethwait J. H. Centromere-linkage analysis and consolidation of the zebrafish genetic map. Genetics. 142:1996;1277-1288.
12. Knapik E. W., Goodman A., Atkinson O. S., Roberts C. T., Shiozawa M., Sim C. U., Weksler-Zangen S., Trolliet M. R., Futrell C., Innes B. A., Koike G., McLaughlin M. G., Pierre L., Simon J. S., Vilallonga E., Roy M., Chiang P.-W., Fishman M. C., Driever W., Jacob H. J. A reference cross DNA panel for zebrafish (Danio rerio) anchored with simple sequence length polymorphism. Development. 123:1996;451-460.
13. Knapik E. W., Goodman A., Ekker M., Chevrette M., Delgado J., Neuhauss S., Shimoda N., Driever W., Fishman M. C., Jacob H. J. A microsatellite genetic linkage map for zebrafish (Danio rerio). Nature Genet. 18:1998;338-343.
14. Lander E. S., Green P., Abrahamson J., Barlow A., Daly M. J., Lincoln S. E., Newburg L. MAPMAKER: An interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics. 1:1987;174-181.
15. Lincoln S. E., Lander E. S. Systematic detection of errors in genetic linkage data. Genomics. 14:1992;604-610.
16. Lincoln, S. E, Daly, M. J, and, Lander, E. S. 1991, PRIMER: A computer program for automatically selecting PCR primers, http://www.genome.wi.mit.edu:80/genomesoftware/ .
17. Postlethwait J. H., Yan Y.-L., Gates M. A., Horne S., Amores A., Brownlie A., Donovan A., Egan E. S., Force A., Gong Z., Goutel C., Fritz A., Kelsh R., Knapik E., Liao E., Paw B., Ransom D., Singer A., Thomson M., Abduljabbar T. S., Yelick P., Beier D., Joly J.-S., Larhammar D., Rosa F., Westerfield M., Zon L. I., Johnson S. L., Talbot W. S. Vertebrate genome evolution and the zebrafish gene map. Nature Genet. 18:1998;345-349.
18. Sampath K., Rubinstein A. L., Cheng A. M. S., Liang J. O., Fekany K., Solnica-Krezel L., Korzh V., Halpern M. E., Wright C. V. E. Induction of the zebrafish ventral brain and floorplate requires cyclops/nodal signalling. Nature. 395:1998;185-189.
19. Shimoda N., Chevrette M., Ekker M., Kikuchi Y., Hotta Y., Okamoto H. Mermaid: A family of short interspersed repetitive elements widespread in vertebrates. Biochem. Biophys. Res. Commun. 220:1996a;226-232.
20. Shimoda N., Chevrette M., Ekker M., Kikuchi Y., Hotta Y., Okamoto H. Mermaid, a family of short interspersed repetitive elements, is useful for zebrafish genome mapping. Biochem. Biophys. Res. Commun. 220:1996b;233-237.
21. Solnica-Krezel L., Schier A. F., Driever W. Efficient recovery of ENU-induced mutations from the zebrafish germline. Genetics. 136:1994;1401-1420.
22. Weber J. L., May P. E. Abundant class of human DNA polymorphisms which can be typed using the polymerase chain reaction. Am. J. Hum. Genet. 44:1989;388-396.
23. Weber J. L., Wong C. Mutation of human short tandem repeats. Hum. Mol. Genet. 2:1993;1123-1128.