Construction of Two BAC Libraries from Half-Smooth Tongue Sole Cynoglossus semilaevis and Identification of Clones Containing Candidate Sex-Determination Genes

Marine Biotechnology

Volumn 12, Issue 5, 2010, Pages 558-568

  Shao, Chang Wei ^a,b   Chen, Song Lin ^a   Scheuring, Chantel F ^b   Xu, Jian Yong ^a   Sha, Zhen Xia ^a   Dong, Xiao Li ^a   Zhang, Hong Bin ^b  

^a YELLOW SEA FISHERIES RESEARCH INSTITUTE   (China)

^b TEXAS A AND M UNIVERSITY   (United States)

Author keywords

BAC library; Cynoglossus semilaevis; Female specific marker; Half smooth tongue sole; Sex determination; Sex related gene

Indexed keywords

BAC LIBRARY; CYNOGLOSSUS SEMILAEVIS; FEMALE-SPECIFIC MARKER; HALF-SMOOTH TONGUE SOLE; SEX DETERMINATION; SEX-RELATED GENE;

GENES; PROBES;

LIBRARIES;

BIOINDICATOR; BIOTECHNOLOGY; CHROMOSOME; CLONAL ORGANISM; COMMERCIAL SPECIES; GENE EXPRESSION; GENETIC MARKER; GENOMICS; SEX DETERMINATION; TELEOST;

ANIMAL; ARTICLE; BACTERIAL ARTIFICIAL CHROMOSOME; CLASSIFICATION; COMPARATIVE STUDY; FEMALE; FLATFISH; FOOD INDUSTRY; GENDER AND SEX; GENE EXPRESSION REGULATION; GENE LIBRARY; GENETICS; MALE; METHODOLOGY; MOLECULAR CLONING;

ANIMALS; CHROMOSOMES, ARTIFICIAL, BACTERIAL; CLONING, MOLECULAR; FEMALE; FISHERIES; FLATFISHES; GENE EXPRESSION REGULATION; GENE LIBRARY; MALE; SEX DETERMINATION PROCESSES;

BACTERIA (MICROORGANISMS); CYNOGLOSSIDAE; CYNOGLOSSUS SEMILAEVIS; TELEOSTEI;

EID: 77957753508     PISSN: 14362228     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10126-009-9242-x     Document Type: Article

References (51)

1. Chang YL, Tao Q, Scheuring C, Meksem K, Zhang HB (2001) An integrated map of Arabidopsis thaliana for functional analysis of its genome sequence. Genetics 159: 1231-1242.
2. Chen SL, Li J, Deng SP, Tian YS, Wang QY, Zhuang ZM, Shan ZX, Xu JY (2007) Isolation of female-specific AFLP markers and molecular identification of genetic sex in half-smooth tongue sole (Cynoglossus semilaevis). Mar Biotechnol 9: 273-280.
3. Chen SL, Deng SP, Ma HY, Tian YS, Xu JY, Yang JF, Wang QY, Ji XS, Shao CW, Wang XL, Wu PF, Deng H, Zhai JM (2008) Molecular marker-assisted sex control in half-smooth tongue sole (Cynoglossus semilaevis). Aquaculture 283: 7-12.
4. Chen SL, Tian YS, Yang JF, Shao CW, Ji XS, Zhai JM, Liao XL, Zhuang ZM, Su PZ, Xu JY, Sha ZX, Wu PF, Wang N (2009) Artificial gynogenesis and sex determining in half-smooth tongue sole (Cynoglossus semilaevis). Mar Biotechnol 11: 243-251.
5. Deng SP, Chen SL (2009) Molecular cloning, tissue, embryos and larvae expression analysis of Sox10 in half-smooth tongue sole, Cynoglossus semilaevis. Mar Genomics 1: 109-114.
6. Deng SP, Chen SL, Xu JY, Liu BW (2009) Molecular cloning, characterization and expression analysis of gonadal P450 aromatase in the half-smooth tongue-sole, Cynoglossus semilaevis. Aquaculture 287: 211-218.
7. Devlin RH, Nagahama Y (2002) Sex determining and sex differentiation in fish: an overview of genetic, physiological, and environmental influences. Aquaculture 208: 191-364.
8. Devlin RH, Biagi CA, Smailus DE (2001) Genetic mapping of Y chromosomal DNA markers in Pacific salmon. Genetica 111: 43-58.
9. Dolezel J, Bartos H, Voglmayr J, Greilhuber J (2003) Nuclear DNA content and genome size of trout and human. Cytometry 51: 127-128.
10. Ezaz MT, Harvey SC, Boonphakdee C, Teale AJ, McAndrew BJ, Penman DJ (2004) Isolation and physical mapping of sex-linked AFLP markers in Nile Tilapia (Oreochromis niloticus L.). Mar Biotechnol 6: 435-445.
11. Froschauer A, Korting C, Katagiri T, Aoki T, Asakawa S, Shimizu N, Schartl M, Volff JN (2002) Construction and initial analysis of bacterial artificial chromosome (BAC) contigs from the sex-determining region of the platyfish Xiphophorus maculatus. Gene 295: 247-254.
12. Griffiths R, Orr KJ, Adam A, Barber I (2000) DNA sex identification in the three-spined stickleback. J Fish Biol 57: 1331-1334.
13. Katagiri T, Asakawa S, Minagawa S, Shimizu N, Hirono I, Aoki T (2001) Construction and characterization of BAC libraries for three fish species: rainbow trout, carp and tilapia. Anim Genet 32: 200-204.
14. Katagiri T, Minagawa S, Hirono I, Kato K, Miyata M, Asakawa S, Shimizu N, Aoki T (2002) Construction of a BAC library for the red sea bream Pagrus major. Fisheries Sci 68: 4942-4944.
15. Kitano T, Takamune K, Kobayashi T, Nagahama S-I, Abe Y (1999) Suppression of P450 aromatase gene expression in sex-reversed males produced by rearing genetically female larvae at a high water temperature during a period of sex diVerentiation in the Japanese flounder (Paralichthys olivaceus). J Mol Endocrinol 23: 167-176.
16. Lee BY, Penman DJ, Kocher TD (2003) Identification of a sex determining region in Nile tilapia (Oreochromis niloticus) using bulked segregant analysis. Anim Genet 34: 379-383.
17. Li Y, Hill JA, Yue GH, Chen F, Orban L (2002) Extensive search does not identify genomic sex markers in Tetraodon nigroviridis. J Fish Biol 61: 1314-1317.
18. Liao X, Shao CW, Tian YS, Chen SL (2007) Polymorphic dinucleotide microsatellites in tongue sole (Cynoglossus semilaevis). Mol Ecol Notes 7: 1147-1149.
19. Liao XL, Ma HY, Xu GB, Shao CW, Tian YS, Ji XS, Yang JF, Chen SL (2009) Construction of a genetic linkage map and mapping of a female-specific DNA marker in half-smooth tongue sole (Cynoglossus semilaevis). Mar Biotechnol. doi: 10. 1007/s10126-009-9184-3.
20. Marchand O, Govoroun M, DCotta Carreras H, McMeel OM, Lareyre JJ, Bernot A, Laudet V, Guiguen Y (2000) DMRT1 expression during gonadal differentiation and spermatogenesis in the rainbow trout, Oncorhynchus mykiss. BBA-Gene Struct Expr 1493: 180-187.
21. Masakatsu W, Naoki K, Asao F, Norihiro O (2003) Construction of a BAC library for Haplochromis chilotes, a cichlid fish from Lake Victoria. Genes Genet Syst 78: 103-105.
22. Matsuda M (2003) Sex determining in fish: lessons from the sex-determining gene of the teleost medaka, Oryzias latipes. Develop Growth Differ 45: 397-403.
23. Matsuda M, Kawato N, Asakawa S, Shimizu N, Nagahama Y, Hamaguchi S, Sakaizumi M, Hori H (2001) Construction of a BAC library derived from the inbred Hd-rR strain of the teleost fish, Oryzias latipes. Genes Genet Syst 76: 61-63.
24. Matsuda M, Nagahama Y, Shinomiya A, Sato T, Matsuda C, Kobayashi T, Morrey CE, Shibata N, Asakawa S, Shimizu N, Horik H, Hamaguchi S, Sakaizumi M (2002) DMY is a Y-specific DM domain gene required for male development in the medaka fish. Nature 417: 559-563.
25. Nanda I, Kondo M, Hornung U, Asakawa S, Winkler C, Shimizu A, Shan Z, Haaf T, Shimizu N, Shima A, Schmid M, Schartl M (2002) A duplicated copy of DMYT1 in the sex-determining region of the Y chromosome of the medaka, Oryzias latipes. Proc Natl Acad Sci USA 99: 11778-11783.
26. Peruzzi S, Chatain B, Menu B (2005) Flow cytometric determination of genome size in European seabass (Dicentrarchus labrax), gilthead seabream (Sparus aurata), thinlip mullet (Liza ramada), and European eel (Anguilla anguilla). Aquat Living Resour 18: 77-81.
27. Quiniou SM, Katagiri T, Miller NW, Wilson M, Wolters WR, Waldbieser GC (2003) Construction and characterization of a BAC library from a gynogenetic channel catfish Ictalurus punctatus. Genet Sel Evol 35: 673-83.
28. Ren C, Xu ZY, Sun S, Lee MK, Wu C, Zhang HB (2005) Genomic libraries for physical mapping. In: Meksem K, Kahl G (eds) The handbook of plant genome mapping: genetic and physical mapping. Wiley, Weinheim, pp 173-213.
29. Schartl M (2004) A comparative view on sex determination in medaka. Mech Develop 121: 639-645.
30. Shao CW, Liao XL, Chen SL (2008) Isolation and characterization of microsatellite DNA loci from the southern flounder, Paralichthys lethostigma. Mol Ecol Resour 8: 381-383.
31. Sinclair AH, Berta P, Palmer MS, Hawkins JR, Griffiths BL, Smith MJ, Foster JW, Frischauf AM, Lovell-Badge R, Goodfellow PN (1990) A gene from the human sex-determining region encodes a protein with homology to a conserved DNA-binding motif. Nature 346: 240-244.
32. Takayuki K, Shuichi A, Ikuo H, Takashi A, Nobuyoshi S (2000) Genomic bacterial artificial chromosome library of the Japanese flounder Paralichthys olivaceus. Mar Biotechnol 2: 571-576.
33. Tao Q, Zhang HB (1998) Cloning and stable maintenance of DNA fragments over 300 kb in Escherichia coli with conventional plasmid-based vectors. Nucleic Acids Res 26: 4901-4909.
34. Tao Q, Chang YL, Wang J, Chen H, Islam-Faridi MN, Scheuring C, Wang B, Stelly DM, Zhang HB (2001) Bacterial artificial chromosome-based physical map of the rice genome constructed by restriction fingerprint analysis. Genetics 158: 1711-1724.
35. Thorsen J, Zhu BL, Frengen E, Osoegawa K, Jong PJ, Koop BF, Davidson WS, Høyheim B (2005) A highly redundant BAC library of Atlantic salmon (Salmo salar): an important tool for salmon projects. BMC Genomics 6: 50-58.
36. Tiersch TR, Chandler RW, Kallman K, Wachtel SS (1989) Estimation of nuclear DNA content by flow cytometry in fishes of the genus Xiphophorus. Comp Biochem Physiol 94: 465-468.
37. Volff JN, Kondo M, Schartl M (2003) Medaka dmY/dmrt1Y is not the universal primary sex-determining gene in fish. Trends Genet 19: 196-199.
38. Volff JN, Nanda I, Schmid M, Schartl M (2007) Governing sex determination in fish: regulatory putsches and ephemeral dictators. Sex Dev 1: 85-99.
39. Wang S, Xu P, Thorsen J, Zhu B, de Jong PJ, Waldbieser G, Kucuktas H, Liu Z (2007) Characterization of a BAC library from channel catfish Ictalurus punctatus: Indications of high levels of chromosomal reshuffling among teleost genomes. Mar Biotechnol 9: 701-11.
40. Wang X, Zhang Q, Sun X, Chen Y, Zhai T, Zhuang W, Qi J, Wang Z (2009) Fosmid library construction and initial analysis of end sequences in female half-smooth tongue sole (Cynoglossus semilaevis). Mar Biotechnol 11: 236-242.
41. Whitaker HA, McAndrew BJ, Taggart JB (2006) Construction and characterization of a BAC library for the European sea bass Dicentrarchus labrax. Anim Genet 37: 526.
42. Xu P, WangS LL, Peatman E, Somridhivej B, Thimmapuram J, Gong G, Liu Z (2006) Channel catfish BAC-end sequences for marker development and assessment of syntenic conservation with other fish species. Anim Genet 37: 321-326.
43. Xu P, Wang S, Liu L, Thorsen J, Kucuktas H, Liu Z (2007) A BAC-based physical map of the channel catfish genome. Genomics 90: 380-388.
44. Yokoi H, Kobayashi T, Tanaka M, Nagahama Y, Wakamatsu Y, Takeda H, Araki K, Morohashi K, Ozato K (2002) Sox9 in a teleost fish, medaka (Oryzias latipes): evidence for diversified function of Sox9 in gonad differentiation. Mol Reprod Dev 63: 5-16.
45. Zhang HB (2003) BAC protocol. In: Laboratory for plant genomics and GENEfinder genomics resource. http://hbz7. tamu. edu.
46. Zhang HB, Wu C (2001) BAC as tools for genome sequencing. Plant Physiol Biochem 39: 1-15.
47. Zhang HB, Zhao X, Ding X, Paterson AH, Wing RA (1995) Preparation of megabase-size DNA from plant nuclei. Plant J 7: 175-184.
48. Zhang HB, Woo S, Wing RA (1996) BAC, YAC and Cosmid library construction. In: Foster G, Twell D (eds) Plant gene isolation: principles and practice. Wiley, England, pp 75-99.
49. Zhang Y, Zhang X, Scheuring CF, Zhang HB, Huan P, Li F, Xiang J (2008) Construction and characterization of two bacterial artificial chromosome libraries of Zhikong scallop, Chlamys farreri Jones et Preston, and identification of BAC clones containing the genes involved in its innate immune system. Mar Biotechnol 10: 358-65.
50. Zhang X, Zhang Y, Scheuring C, Zhang HB, Huan P, Wang B, Liu C, Li F, Liu B, Xiang J (2009) Construction and characterization of a bacterial artificial chromosome (BAC) library of Pacific white shrimp, Litopenaeus vannamei. Mar Biotechnol. doi: 10. 1007/s10126-009-9209-y.
51. Zhou LQ, Yang AG, Liu XZ, Du W, Zhuang ZM (2005) The karyotype analysis of Cynoglossus semilaevis in China. J Fish China (in Chinese with English abstract) 29: 417-419.