A linkage map of common carp (Cyprinus carpio) based on AFLP and microsatellite markers

Animal Genetics

Volumn 41, Issue 2, 2010, Pages 191-198

  Cheng, L ^a,b   Liu, L ^a,b   Yu, X ^a   Wang, D ^a,b   Tong, J ^a  

^a INSTITUTE OF HYDROBIOLOGY   (China)

^b UNIVERSITY OF CHINESE ACADEMY OF SCIENCES   (China)

Author keywords

AFLP; Commoncarp (Cyprinus carpio); Haploids; Linkage map; Microsatellite (SSR)

Indexed keywords

CYPRINIDAE; CYPRINUS CARPIO;

MICROSATELLITE DNA;

AMPLIFIED FRAGMENT LENGTH POLYMORPHISM; ANIMAL; ARTICLE; CARP; GENETIC LINKAGE; GENETICS; GENOME;

AMPLIFIED FRAGMENT LENGTH POLYMORPHISM ANALYSIS; ANIMALS; CARPS; GENOME; LINKAGE (GENETICS); MICROSATELLITE REPEATS;

EID: 77951646629     PISSN: 02689146     EISSN: 13652052     Source Type: Journal    
DOI: 10.1111/j.1365-2052.2009.01985.x     Document Type: Article

References (43)

1. Agresti J.J., Seki S., Cnaani A., Poompuang S., Hallerman E.M., Umiel N., Hulata G., Gall G.A.E. & May B. (2000) Breeding new strains of tilapia: development of an artificial center of origin and linkage map based on AFLP and microsatellite loci. Aquaculture 185, 43-56.
2. Aljanabi S.M. & Martinez I. (1997) Universal and rapid saltextraction of high quality genomic DNA for PCR- based techniques. Nucleic Acids Research 25, 4692-4693
3. Alonso-Blanco C., Peeters A.J.M., Koornneef M., Lister C., Dean C., van den Bosch N., Pot J. & Kuiper M.T.R. (1998) Development of an AFLP based linkage map of Ler, Col and Cvi Arabidopsis thaliana ecotypes and construction of a Ler/Cvi recombinant inbred line population. The Plant Journal 14, 259-271
4. Balon E.K. (1995) Origin and domestication of the wild carp, Cyprinus carpio: from Roman gourmets to the swimming flowers. Aquaculture 129, 3-48.
5. Bensch S. & Akesson M. (2005) Ten years of AFLP in ecology and evolution: why so few animals? Molecular Ecology 14, 2899-2914
6. Bradshaw J.E., Hackett C.A., Meyer R.C., Milbourne D., McNicol J.W., Phillips M.S. & Waugh R. (1998) Identification of AFLP and SSR markers associated with quantitative resistance to Globodera pallida (Stone) in tetraploid potato (Solanum tuberosum subsp. tuberosum) with a view to marker-assisted selection. Theoretical and Applied Genetics 97, 202-210
7. Brouwer D.J. & Osborn T.C. (1999) A molecular marker linkage map of tetraploid alfalfa (Medicago sativa L.). Theoretical and Applied Genetics 99, 1194-1200
8. Cervera M., Storme V., Ivens B., Gusmao J., Liu B.H., Hostyn V., Van Slycken J., Van Montagu M. & Boerjan W. (2001) Dense genetic linkage maps of three Populus species (Populus deltoides, P. nigra and P. trichocarpa) based on AFLP and microsatellite markers. Genetics 158, 787-809.
9. Cherfas N.B. (1981) Gynogenesis in fishes. In: Genetic Bases of Fish Selection (Ed. by V.S. Kirpichnikov), pp. 255-273 Springer-Verlag, NewYork, NY.
10. Chistiakov D.A., Hellemans B. & Volckaert F.A.M. (2006) Microsatellites and their genomic distribution, evolution, function and applications: a review with special reference to fish genetics. Aquaculture 255, 1-29.
11. Crooijmans R.P.M.A., Poel J.J.V.D., Groenen M.A.M., Bierbooms V.A.F. & Komen J. (1997) Microsatellite markers in common carp (Cyprinus carpio). Animal Genetics 28, 129-134
12. David L., Rajasekaran P., Fang J., Hillel J. & Lavi U. (2001) Polymorphism in ornamental and common carp strains (Cyprinus carpio) as revealed by AFLP analysis and a new set of microsatellite markers. Molecular Genetics and Genomics 266, 353-362
13. David L., Blum S., Feldman M.W., Lavi U. & Hillel J. (2003) Recent duplication of the common carp (Cyprinus carpio L.) genome as revealed by analyses of microsatellite loci. Molecular Biology and Evolution 20, 1425-1434
14. FAO. (2006) Fisheries Topics: Statistics - Fisheries Statistics and Information. Text compiled by Tina Farmer. FAO Fisheries and Aquaculture Department [online], Rome. Updated 2006 15 09. [Cited 11 Nov 2008]. Available at ftp://ftp.fao.org/fi/stat/summary/summ-06/default.htm.
15. Faris J.D., Laddomada B. & Gill B.S. (1998) Molecular mapping of segregation distortion loci in Aegilops tauschii. Genetics 149, 319-327
16. Ferguson M. & Danzman R. (1998) Role of genetic markers in fisheries and aquaculture: useful tools or stamp collecting? Canadian Journal of Fisheries and Aquatic Sciences 55, 1553-1563
17. Ferris S.D. & Whitt G.S. (1977) The evolution of duplicate gene expression in the carp (Cyprinus carpio). Cellular and Molecular Life Sciences 33, 1299-1301
18. Fortes G.G., Marzano F.N., Bouza C., Martinez P., Ajmone-Marsan P. & Gandolfi G. (2008) Application of amplified fragment length polymorphism markers to assess molecular polymorphisms in gynogenetic haploid embryos of turbot (Scophthalmus maximus). Aquaculture Research 39, 41-49
19. Grattapaglia D. & Sederoff R. (1994) Genetic linkage maps of Eucalyptus grandis and Eucalyptus urophylla using a pseudo-testcross: mapping strategy and RAPD markers. Genetics 137, 1121-1137
20. Grivet L., D'Hont A., Roques D., Feldmann P., Lanaud C. & Glaszmann J.C. (1996) RFLP Mapping in cultivated sugarcane (Saccharum spp.): genome organization in a highly polyploid and aneuploid interspecific hybrid. Genetics 142, 987-1000.
21. Kocher T.D., Lee W.J., Sobolewska H., Penman D. & McAndrew B. (1998) A genetic linkage map of a cichlid fish, the tilapia (Oreochromis niloticus). Genetics 148, 1225-1232
22. Krutovskii K.V., Vollmer S.S., Sorensen F.C., Adams W.T., Knapp S.J. & Strauss S.H. (1998) RAPD genome maps of Douglas-fir. Journal of Heredity 89, 197-205.
23. Larhammar D. & Risinger C. (1994) Molecular genetic aspects of tetraploidy in the common carp Cyprinus carpio. Molecular Phylogenetics and Evolution 3, 59-68.
24. Lie O., Slettan A., Lingaas F., Olsaker I., Hordvik I. & Refstie T. (1994) Haploid gynogenesis: a powerful strategy for linkage analysis in fish. Animal Biotechnology 5, 33-45.
25. Liu R. & Meng J. (2003) MapDraw: a Microsoft Excel macro for drawing genetic linkage maps based on given genetic linkage data. Heraditas (Beijing) 25, 317-321 (in Chinese with English abstract)
26. Liu Z., Karsi A., Li P., Cao D. & Dunham R. (2003) An AFLP-based genetic linkage map of channel catfish (Ictalurus punctatus) constructed by using an interspecific hybrid resource family. Genetics 165, 687-694
27. Lodhi M., Daly M., Ye G., Weeden N. & Reisch B. (1995) A molecular marker based linkage map of Vitis. Genome 38, 786-794
28. Manly K.F., Cudmore J.R.H. & Meer J.M. (2001) Map Manager QTX, cross-platform software for genetic mapping. Mammalian Genome 12, 930-932
29. Meyer R.C., Milbourne D., Hackett C.A., Bradshaw J.E., McNichol J.W. & Waugh R. (1998) Linkage analysis in tetraploid potato and association of markers with quantitative resistance to late blight (Phytophthora infestans). Molecular and General Genetics 259, 150-160
30. Naruse K., Fukamachi S., Mitani H. et al. (2000) A detailed linkage map of medaka, Oryzias latipes: comparative genomics and genome evolution. Genetics 154, 1773-1784
31. Nichols K.M., Young W.P., Danzmann R.G. et al. (2003) A consolidated linkage map for rainbow trout (Oncorhynchus mykiss). Animal Genetics 34, 102-115
32. Poompuang S. & Na-Nakorn U. (2004) A preliminary genetic map of walking catfish (Clarias macrocephalus). Aquaculture 232, 195-203.
33. Postlethwait J.H., Johnson S.L., Midson C.N. et al. (1994) A genetic linkage map for the zebrafish. Science 264, 699-703.
34. Rajapakse S., Byrne D.H., Zhang L., Anderson N., Arumuganathan K. & Ballard R.E. (2001) Two genetic linkage maps of tetraploid roses. Theoretical and Applied Genetics 103, 575-583
35. Sakamoto T., Danzmann R.G., Gharbi K. et al. (2000) A microsatellite linkage map of rainbow trout (Oncorhynchus mykiss) characterized by large sex-specific differences in recombination rates. Genetics 155, 1331-1345
36. Sun X. & Liang L. (2004) A genetic linkage map of common carp (Cyprinus carpio) and mapping of a locus associated with cold tolerance. Aquaculture 238, 165-172
37. Tanksley S. (1993) Mapping polygenes. Annual Review of Genetics 27, 205-233
38. Wang D., Liao X., Cheng L., Yu X. & Tong J. (2007) Development of novel EST-SSR markers in common carp by data mining from public EST sequences. Aquaculture 271, 558-574
39. Wei D., Lou Y., Sun X. & Shen J. (2001) Isolation of microsatellite markers in the common carp (Cyprinus carpio). Zoological Research 22, 238-241 (in Chinese with English abstract).
40. Wu K.K., Burnquist W., Sorrells M.E., Tew T.L., Moore P.H. & Tanksley S.D. (1992) The detection and estimation of linkage in polyploids using single-dose restriction fragments. Theoretical and Applied Genetics 83, 294-300.
41. Young W.P., Wheeler P.A., Coryell V.H., Keim P. & Thorgaard G.H. (1998) A detailed linkage map of rainbow trout produced using doubled haploids. Genetics 148, 839-850
42. Yu X., Zhou T., Li Y., Li K. & Zhou M. (1989) Chromosomes of Chinese Fresh-water Fishes, pp. 77. Science Press, Beijing, China. (in Chinese).
43. Zhang H., Okamoto N. & Ikeda Y. (1995) Two c-myc genes from a tetraploidfish, the common carp(Cyprinus carpio). Gene 153, 231-236