A microsatellite linkage map of rainbow trout (Oncorhynchus mykiss) characterized by large sex-specific differences in recombination rates

Genetics

Volumn 155, Issue 3, 2000, Pages 1331-1345

  Sakamoto, Takashi ^a,c   Danzmann, Roy G ^a   Gharbi, Karim ^b   Howard, Pamela ^a   Ozaki, Akiyuki ^c   Khoo, Sok Kean ^c   Woram, Rachael A ^a   Okamoto, Nobuaki ^c   Ferguson, Moira M ^a   Holm, Lars Erik ^d   Guyomard, René ^b   Hoyheim, Bjorn ^e  

^a UNIVERSITY OF GUELPH   (Canada)

^b CEMAGREF   (France)

^c TOKYO UNIVERSITY OF MARINE SCIENCE AND TECHNOLOGY   (Japan)

^d DANISH INSTITUTE OF AGRICULTURAL SCIENCES   (Denmark)

^e NORWEGIAN UNIVERSITY OF LIFE SCIENCES   (Norway)

Author keywords

[No Author keywords available]

Indexed keywords

MICROSATELLITE DNA;

ANIMAL TISSUE; ARTICLE; CENTROMERE; CHROMOSOME ARM; CHROMOSOME SIZE; CONTROLLED STUDY; DIPLOIDY; FEMALE; GENE LINKAGE GROUP; GENE MAPPING; GENETIC LINKAGE; GENETIC RECOMBINATION; MALE; NONHUMAN; PRIORITY JOURNAL; RAINBOW TROUT; SEX DIFFERENCE; TETRAPLOIDY;

ANIMALS; CHROMOSOME MAPPING; CHROMOSOMES; FEMALE; GENETIC MARKERS; INBREEDING; LOD SCORE; MALE; MICROSATELLITE REPEATS; ONCORHYNCHUS MYKISS; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; RANDOM AMPLIFIED POLYMORPHIC DNA TECHNIQUE; RECOMBINATION, GENETIC; SEX DETERMINATION (GENETICS); SEX FACTORS;

ANIMALIA; AVES; MYKISS; ONCORHYNCHUS MYKISS; SALMONIDAE;

EID: 18544392753     PISSN: 00166731     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (55)

1. ALLENORF, F. W., and R. G. DANZMANN, 1997 Secondary tetrasomic segregation of MDH-B and preferential pairing of homeologues in rainbow trout. Genetics 145: 1083-1092.
2. ALLENDORF, F. W., and R. F. LEARY, 1984 Heterozygosity in gynogenetic diploids and triploids estimated by gene-centromere recombination rates. Aquaculture 43: 413-420.
3. ALLENDORF, F. W., and G. H. THORGAARD, 1984 Tetraploidy and the evolution of salmonid fishes, pp. 1-46 in Evolutionary Genetics of Fishes, edited by B. J. TURNER. Plenum Press, New York.
4. ALLENDORF, K. W., J. E. SEEB, K. L. KNUDSEN, G. H. THORGAARD and R. F. LEARY, 1986 Gene-centromere mapping of 25 loci in rainbow trout. J. Hered. 77: 307-312.
5. ALLENDORF, F. W., W. A. GELMAN and G. H. THORGAARD, 1994 Sex-linkage of two enzyme loci in Oncorhynchus mykiss (rainbow trout). Heredity 72: 498-507.
6. ANDERSSON, L., C. S. HALEY, H. ELLEGREN, S. A. KNOTT, M. JOHANSSON et al., 1994 Genetic mapping of quantitative trait loci for growth and fatness in pigs. Science 263: 1771-1774.
7. ARCHIBALD, A. L., C. S. HALEY, J. F. BROWN, S. COUPERWHITE, H. A. MCQUEEN et al., 1995 The PiGMaP consortium linkage map of the pig (Sus scrofa). Mamm. Genome 6: 157-175.
8. BANKS, M. A., M. S. BLOUIN, B. A. BALDWIN, V. K. RASHBROOK, H. A. FITZGERALD et al., 1999 Isolation and inheritance of novel microsatellites in chinook salmon (Oncorhynchus tschawytscha). J. Hered. 90: 281-288.
9. BAKDAKCI, F., and D. O. F. SKIBINSKI, 1994 Application of the RAPD technique in tilapia lish: species and subspecies identification. Heredity 73: 117-123.
10. BARENDSE, W., S. M. ARMITAGE, L. M. KOSSAREK, A. SHALOM, B. W. KIRKPATRICK et al., 1994 A genetic linkage map of the bovine genome. Nat. Genet. 6: 227-235.
11. BURNHAM, C. R., 1962 Discussions in Cytogenetics. Burgess Publishing Co., St. Paul.
12. CHOO, K. H. A., 1998 Why is the centromere so cold? Genome Res. 8: 81-82.
13. CONDREY, M. J., and P. BENTZEN, 1998 Chatacterization of coastal cutthroat trout (Oncorhynchus clarki clarki) microsatellites and their conservation in other salmonids. Mol. Ecol. 7: 787-789.
14. CRAWFORD, A. M., K. G. DODDS, A. J. EDE, C. A. PIERSON, G. W. MONTGOMERY et al., 1995 An autosomal genetic linkage map of the sheep genome. Genetics 140: 703-724.
15. CROOIJMANS, R. P. M. A., A. J. A. VAN KAMPEN, J. J. VAN DER POEL and M. A. M. GROENEN, 1996 Preliminary linkage map of the chicken (Gallus domesticus) genome based on microsatellite markers: 77 new markers mapped. Poult. Sci. 75: 746-754.
16. DANZMANN, R. G., T. R. JACKSON and M. M. FERGUSON, 1999 Epistasis in allelic expression at upper temperature tolerance QTL in rainbow trout. Aquaculture 173: 45-58.
17. DAVISSON, M. T., J. E. WRIGHT and L. M. ATHERTON, 1973 Cytogenetic analysis of pseudolinkage of LDH loci in the teleost genus Salvelinus. Genetics 73: 645-658.
18. DE GORTARI, M. J., B. A. FREKING, R. P. CUTHBERTSON, S. M. KAPPES, J. W. KEELE et al., 1998 A second-generation linkage map of the sheep genome. Mamm. Genome 9: 204-209.
19. DIB, C., S. FAURE, C. FIZAMES, D. SAMSON, N. DROUOT et al., 1996 A comprehensive genetic map of the human genome based on 5,264 micrasatellites. Nature 380: 152-154.
20. DIETRICH, W. F., J. MILLER, R. STEEN, M. A. MERCHANT, D. DAMRON-BOLES et al., 1996 A comprehensive genetic map of the mouse genome. Nature 380: 149-152.
21. ELLEGREN, H., B. P. CHOWDHARY, M. JOHANSSON, L. MARKLUND, M. FREDHOLM et al., 1994 A primary linkage map of the porcine genome reveals a low rate of genetic recombination. Genetics 137: 1089-1100.
22. GEORGES, M., D. NIELSEN, M. MACKINNON, A. MISHRA, R. OKIMOTO et al., 1995 Mapping quantitative trail loci controlling milk production in dairy cattle by exploring progeny testing. Genetics 139: 907-920.
23. GROBET, L., L. J. R. MARTIN, O. PONCELEI, D. PIROTTIN, B. BROUWERS et al. 1997 A deletion in the bovine myostatin gene causes the double-muscled phenotype in cattle. Nat. Genet. 17: 71-74.
24. GROENEN, M. A. M., R. P. M. A. CROOIJMANS, A. VEENENDAAL, H. H. CHENG, M. SIWEK et al., 1998 A comprehensive microsatellite linkage map of the chicken genome. Genomics 49: 265-274.
25. GYAPAY, G., J. MORISSETTE, A. VIGNAL, C. DIB, C. FIZAMES et al., 1994 The 1993-94 Genethon human genetic linkage map. Nat. Genet. 7: 246-339.
26. HALDANE, J. B. S., 1922 Sex ratio and unisexual sterility in hybrid animals. J. Genet. 12: 101-109.
27. HOLM, L.-E., and K. BRUSGAARD, 1999 Two polymorphic dinucleotide repeats in rainbow trout (Onchorhyncus mykiss). Anim. Genet. 30: 162-163.
28. IHSSEN, P. E., 1986 Selection of fingerling rainbow trout for high and low tolerance to temperature. Aquaculture 57: 370.
29. JACKSON, T. R., M. M. FERGUSON, R. G. DANZMANN, A. G. FISHBACK, P. E. IHSSEN et al., 1998 Identification of two OTL influencing upper temperature tolerance in three rainbow trout (Oncorhynchus mykiss) half-sib families. Heredity 80: 143-151.
30. JACOB, H. J., D. M. BROW, R. K. BUNKER, M. J. DALY, V. J. DZAU et al., 1995 A genetic linkage map of the laboratory rat, Rattus norvegicus. Nat. Genet. 9: 63-69.
31. JOHNSON, K. R., J. E. WRIGHT, JR. and B. MAY, 1987 Linkage relationships reflecting ancerstral tetraploidy in salmonid fish. Genetics 116: 579-591.
32. KAPPES, S. M., J. W. KEELE, R. T. STONE, R. A. MCGRAW, T. S. SONSTEGARD et al., 1997 A second-generation linkage map of the bovine genome. Genome Res. 7: 235-249.
33. KEIM, P., J. M. SCHUPP, S. K. TRAVIS, K. CLAYTON and D. M. WEBB, 1997 A high-density soybean genetic map based upon AKLP markers. Crop. Sci. 37: 537-543.
34. KNAPIK, E. W., A. GOODMAN, M. EKKER, M. CHEVRETTE, J. DELGADO et al., 1998 A microsatellite genetic linkage map for zebrafish (Daniop rerio). Nat. Genet. 18: 338-343.
35. KNOTT, S. A., L. MARKLUND, C. S. HALEY, K. ANDERSSON, W. DAVIES et al., 1998 Multiple marker mapping of quantitative trait loci in a cross between outbred wild boat and large white pigs. Genetics 149: 1069-1080.
36. KOCHER, T. D., W.-J. LEE, H. SOBOLEWSKA, D. PENMAN and B. MCANDREW, 1998 A genetic linkage map of a cichlid fish, the tilapia (Oreochromis niloticus). Genetics 148: 1225-1232.
37. LEE, W.-J., and T. D. KOCHER, 1996 Microsatellite DNA markers for genetic mapping in Oreochromis niloticus. J. Fish Biol. 49: 169-171.
38. LEE, G. M., and J. E. WRIGHT, JR., 1981 Mitotic and meiotic analyses of brook trout, Salvelinus fontinalis J. Hered. 72: 321-327.
39. MAY, B., and K. R. JOHNSON, 1990 Composite linkage map of salmonid fishes, pp. 4.151-4.159 in Genetic Maps, Ed. 5. edited by S. J. O'BRIEN. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
40. MELLERSH, C. S., A. A. LANGSTON, G. M. ACLAND, M. A. FLEMING, K. RAY et al., 1997 A linkage map of the canine genome. Genomics 46: 326-336.
41. MORRIS, D. B., K. R. RICHARD and J. M. WRIGHT, 1996 Microsatellites from rainbow trout (Oncorhyncus mykiss) and their use for genetic study of salmonids. Can. J. Fish. Aquat. Sci. 53: 120-126.
42. NELSON, R. J., and T. D. BEACHAM, 1999 Isolation and cross species amplification of microsatellite loci useful for study of Pacific salmon. Anim. Genet. 30: 228-229.
43. OLSEN, J. B., P. BENTZEN and J. K. SEER. 1998 Characterization of seven microsatellite loci derived from pink salmon. Mol. Ecol. 7: 1087-1090.
44. POSTLETHWAIT, J. H., S. L. JOHNSON, C. N. MIDSON, W. S. TALBOT, M. GATES et al., 1994 A genetic linkage map for the zebrafish. Science 264: 699-703.
45. PRESA, P., and R. GUYOMARD, 1996 Conservation of microsatellites in three species of salimonids. J. Fish Biol. 49: 1326-1329.
46. SAKAMOTO T., N. OKAMOTO and Y. IKEDA, 1996 Application of PCR primer pairs from rainbow trout to detect polymorphisims of CA repeat DNA loci in five confamilial species. Fish. Sci. 62: 552-555.
47. SAKAMOTO, T., R. G. DANZMANN, N. OKAMOTO, M. M. FERGUSON and P. F., IHSSEN, 1999 Linkage analysis of QTL associated with spawning time in rainbow from (Oncorhyncus mykiss). Aquaculture 173: 33-43.
48. SCRIBNER, K. T., J. R. GUST and R. L. FIELDS, 1996 Isolation and characterization of novel microsatellite loci: cross-species amplification and population genetic applications. Can. J. Fish. Aquat. Sci. 53: 833-841.
49. SLETTAN, A., I. OLSAKER and O. LIE, 1997 Segregation studies and linkage analysis of Atlantic salmon microsatellites using haploid genetics. Heredity 78: 620-627.
50. SNOJ, A., J. POHAR and P. DOVG, 1997 The first microsatellite DNA marker BFRO001 for Marble trout. J. Anim. Sci. 75: 1983.
51. THORGAARD, G. H., F. W. ALLENDORF and K. L. KNUDSEN, 1983 Genecentromere mapping in rainbow trout: high interference over long map distances. Genetics 103: 771-783.
52. WADA, H., K. NARUSE, A. SHIMADA and A. SHIMA, 1995 Genetic linkage map of a fish, the Japanese medaka Oryzias latipes. Mol. Mar. Biol. Biotechnol. 4: 269-274.
53. WRIGHT, J. E. JR., B. MAY, M. STONEKING and G. M. LEE, 1980 Pseudolinkage of the duplicated loci for supernatant asparate amino-transferase in brook trout, Salvelinus fontinalis. J. Hered. 71: 223-238.
54. WRIGHT, J. E. JR., K. JOHNSON, A. HOLLISTER, and B. MAY, 1983 Meiotic models to exlain classical linkage, pseudolinkage, and chromosome pairing in tetraploid derivative salmonid genomes. Isozymes Curr. Top. Biol. Med. Res. 10: 239-260.
55. YOUNG, W. P., P. A. WHEELER, V. H. COORYELL, P. KEIM and G. H. THORGAARD, 1998 A detailed linkage map of rainbows trout produced using doubled haploids. Genetics 148: 839-850.