A microsatellite genetic map of the turbot (Scophthalmus maximus)

Genetics

Volumn 177, Issue 4, 2007, Pages 2457-2467

  Bouza, Carmen ^a   Hermida, Miguel ^a   Pardo, Belén G ^a   Fernández, Carlos ^a   Fortes, Gloria G ^a   Castro, Jaime ^a   Sánchez, Laura ^a   Presa, Pablo ^b   Pérez, Montse ^b   Sanjuán, Andrés ^b   De Carlos, Alejandro ^b   Álvarez Dios, José Antonio ^a   Ezcurra, Susana ^c   Cal, Rosa M ^d   Piferrer, Francesc ^e   Martínez, Paulino ^a  

^a UNIVERSITY OF SANTIAGO DE COMPOSTELA   (Spain)

^b UNIVERSITY OF VIGO   (Spain)

^c Stolt Sea Farm SA   (Spain)

^d Instituto Español de Oceanografía   (Spain)

^e INSTITUT DE CIÈNCIES DEL MAR   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

AQUACULTURE; ARTICLE; COMPARATIVE GENE MAPPING; CONSENSUS SEQUENCE; CONTROLLED STUDY; DIPLOIDY; DNA FLANKING REGION; FAMILY; FEMALE; FISH GENETICS; GENE CONSTRUCT; GENE MAPPING; GENETIC DISTANCE; GENETIC RECOMBINATION; GENOME ANALYSIS; HAPLOIDY; LINKAGE ANALYSIS; MALE; MICROSATELLITE MARKER; MOLECULAR EVOLUTION; NONHUMAN; PRIORITY JOURNAL; PROGENY; QUANTITATIVE TRAIT LOCUS MAPPING; SEQUENCE HOMOLOGY; SEX DIFFERENCE; SYNTENY; TURBOT;

ANIMALS; CHROMOSOME MAPPING; FEMALE; FLATFISHES; GENOME; LINKAGE (GENETICS); MALE; MICROSATELLITE REPEATS; RECOMBINATION, GENETIC; SYNTENY;

PLEURONECTIFORMES; SCOPHTHALMIDAE; SCOPHTHALMUS MAXIMUS; TETRAODON NIGROVIRIDIS; VERTEBRATA;

EID: 37249079112     PISSN: 00166731     EISSN: 00166731     Source Type: Journal    
DOI: 10.1534/genetics.107.075416     Document Type: Article

References (51)

1. BOUZA, C., L. SÁNCHEZ and P. MARTÍNEZ, 1994 Karyotypic characterization of turbot (Scophthalmus maximus) with conventional, fluorochrome, and restriction endonuclease banding techniques. Mar. Biol. 120: 609-613.
2. BOUZA, C., J. CASTRO, P. PRESA, L. SÁNCHEZ and P. MARTÍNEZ, 2002 Allozyme and microsatellite diversity in natural and domestic populations of turbot (Scophthalmus maximus) in comparison with other Pleuronectiformes. Can. J. Fish. Aquat. Sci. 59: 1460-1473.
3. CASTRO, J., C. BOUZA, L. SÁNCHEZ, R. M. CAL, F. PIFERRER et al., 2003 Gynogenesis assessment using microsatellite genetic markers in turbot (Scophthalmus maximus). Mar. Biotechnol. 5: 584-592.
4. CASTRO, J., C. BOUZA, P. PRESA, A. PINO-QUERIDO, A. RIAZA et al., 2004 Potential sources of error in parentage assessment of turbot (Scophthalmus maximus) using microsatellite loci. Aquaculture 242: 119-135.
5. CHISTIAKOV, D. A., B. HELLEMANS and F. A. M. VOLCKAERT, 2005 Microsatellites and their genomic distribution, evolution, function and applications: a review with special reference to fish genetics. Aquaculture 255: 1-29.
6. COIMBRA, M. R. M., K. KOBAYASHI, S. KORETSUGU, O. HASEGAWA, E. OHARA et al., 2003 A genetic linkage map of the Japanese flounder, Paralichthys olivaceus. Aquaculture 220: 203-218.
7. COLOSIMO, P. F., K. E. HOSEMANN, S. BALABHADRA, G. VILLARREAL, M. DICKSON et al., 2005 Widespread parallel evolution in sticklebacks by repeated fixation of Ectodysplasin alleles. Science 307: 1928-1933.
8. COUGHLAN, J. P., E. MCCARTHY, D. MCGREGOR, P. O'DONOGHUE, P. GALVIN et al., 1996 Four polymorphic microsatellites in turbot Scophthalmus maximus. Anim. Genet. 27: 441.
9. CRISTESCU, M. E. A., J. K. COLBOURNE, J. RADIVOJAC and M. LYNCH, 2006 A micro satellite-based genetic linkage map of the water-flea, Daphnia pulex: on the prospect of crustacean genomics. Genomics 88: 415-430.
10. CUÑADO, N., J. TERRONES, L. SÁ NCHEZ, P. MARTÍNEZ and J. L. SANTOS, 2001 Synaptonemal complex analysis in spermatocytes and oocytes of turbot, Scophthalmus maximus (Pisces, Scophthalmidae). Genome 44: 1143-1147.
11. CUŃADO, N., J. TERRONES, L. SÁ NCHEZ, P. MARTÍNEZ and J. L. SANTOS, 2002 Sex-dependent synaptic behaviour in triploid turbot, Scophthalmus maximus (Pisces, Scophthalmidae). Heredity 89: 460-464.
12. DANZMANN, R. G., and K. GHARBI, 2001 Gene mapping in fishes: a means to an end. Genetica 111: 3-23.
13. DEKKERS, J. C. M., 2004 Commercial application of marker- and gene-assisted selection in livestock: strategies and lessons. J. Anim. Sci. 82: 313-328.
14. DEKKERS, J. C. M., and F. HOSPITAL, 2002 The use of molecular genetics in the improvement of agricultural populations. Nat. Rev. Genet. 3: 22-32.
15. ERICKSON, D. L., C. B. FENSTER, H. K. STENOIEN and D. PRICE, 2004 Quantitative trait locus analyses and the study of evolutionary process. Mol. Ecol. 13: 2505-2522.
16. ESTOUP, A., K. GHARBI, M. SAN CRISTOBAL, C. CHEVALET, P. HAFFRAY et al., 1998 Parentage assignment using microsatellites in turbot (Scophthalmus maximus) and rainbow trout (Oncorhynchus mykiss) hatchery populations. Can. J. Fish. Aquat. Sci. 55: 715-725.
17. FRANCH, R., B. LOURO, M. TSALAVOUTA, D. CHATZIPLIS, C. S. TSIGENOPOULOS et al., 2006 A genetic linkage map of the hermaphrodite teleost fish Sparus aurata L. Genetics 174: 851-861.
18. GAFFNEY, D. J., and P. D. KEIGHTLEY, 2004 Unexpected conserved non-coding DNA blocks in mammals. Trends Genet. 20: 332-337.
19. GHARBI, K., A. GAUTIER, R. G. DANZMANN, S. GHARBI, T. SAKAMOTO et al., 2006 A linkage map for brown trout (Salmo trutta): chromosome homeologies and comparative genome organization with other salmonid fish. Genetics 172: 2405-2419.
20. GLAZIER, A. M., J. H. NADEAU and T. J. AITMAN, 2002 Finding genes that underlie complex traits. Science 298: 2345-2349.
21. HARDIE, D. C., and P. D. N. HEBERT, 2004 Genome-size evolution in fishes. Can. J. Fish. Aquat. Sci. 61: 1636-1646.
22. IYENGAR, A., S. PIYAPATTANAKORN, D. A. HEIPEL, D. M. STONE, B. R. HOWELL et al., 2000 A suite of highly polymorphic microsatellite markers in turbot (Scophthalmus maximus L.) with potential for use across several flatfish species. Mol. Ecol. 9: 368-371.
23. JACOB, H. J., K. LINDPAINTNER, S. E. LINCOLN, K. KUSUMI, R. K. BUNKER et al., 1991 Genetic mapping of a gene causing hypertension in the stroke-prone spontaneously hypertensive rat. Cell 67: 213-224.
24. JAILLON, O., J. M. AURY, F. BRUNET, J. L. PETIT, N. STANGE-THOMANN et al., 2004 Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype. Nature 431: 946-957.
25. KAI, W., K. KIKUCHI, M. FUJITA, H. SUETAKE, A. FUJIWARA et al., 2005 A genetic linkage map for the tiger pufferfish, Takifugu rubripes. Genetics 171: 227-238.
26. KOCHER, T. D., W. J. LEE, H. SOBOLEWSKA, D. PENMAN and B. MCANDREW, 1998 A genetic linkage map of a cichlid fish, the tilapia (Oreochromis niloticus). Genetics 148: 1225-1232.
27. KOSAMBI, D. D., 1944 The estimation of map distances from recombination values. Ann. Eugen. 12: 172-175.
28. LEE, B. Y., W. J. LEE, J. T. STREELMAN, K. L. CARLETON, A. E. HOWE, et al., 2005 A second-generation genetic linkage map of tilapia (Oreochromis spp.). Genetics 170: 237-244.
29. LIE, O., A. SLETTAN, F. LINGAAS, I. OLSAKER, I. HORDVIK et al., 1994 Haploid gynogenesis: a powerful strategy for linkage analysis in fish. Anim. Biotech. 5: 33-45.
30. MIYA, M., H. TAKESHIMA, H. ENDO, N. B. ISHIGURO, J. G. INOUE et al., 2003 Major patterns of higher teleostean phylogenies: a new perspective based on 100 complete mitochondrial DNA sequences. Mol. Phylogenet. Evol. 26: 121-138.
31. NARUSE, K., S. FUKAMACHI, H. MITANI, M. KONDO, T. MATSUOKA et al., 2000 A detailed linkage map of medaka, Oryzias latipes: comparative genomics and genome evolution. Genetics 154: 1773-1784.
32. 3 banding and in situ hybridization. Heredity 86: 531-536.
33. PARDO, B. G., L. CASAS, G. G. FORTES, C. BOUZA, P. MARTÍNEZ et al., 2005 New microsatellite markers in turbot (Scophthalmus maximus) derived from an enriched genomic library and sequence databases. Mol. Ecol. Notes 5: 62-64.
34. PARDO, B. G., M. HERMIDA, C. FERNÁNDEZ, C. BOUZA, M. PÉREZ et al., 2006 A set of highly polymorphic microsatellites useful for kinship and population analysis in turbot (Scophthalmus maximus L.). Aquac. Res. 37: 1578-1582.
35. PARDO, B. G., C. FERNÁNDEZ, M. HERMIDA, A. VÁZQUEZ, M. PÉREZ et al., 2007 Development and characterization of 248 novel microsatellite markers in turbot (Scophthalmus maximus). Genome 50: 329-332.
36. PIFERRER, F., R. M. CAL, C. GÓMEZ, B. ALVAREZ-BLÁZQUEZ, J. CASTRO et al., 2004 Induction of gynogenesis in the turbot (Scophthalmus maximus): effects of UV irradiation on sperm motility, the Hertwig effect and viability during the first 6 months of age. Aquaculture 238: 403-419.
37. POSTLETHWAIT, J. H., S. L. JOHNSON, C. N. MIDSON, W. S. TALBOT, M. GATES et al., 1994 A genetic linkage map for the zebrafish. Science 264: 699-703.
38. SAKAMOTO, T., R. G. DANZMANN, K. GHARBI, P. HOWARD, A. OZAKI et al., 2000 A microsatellite linkage map of rainbow trout (Oncorhynchus mykiss) characterized by large sex-specific differences in recombination rates. Genetics 155: 1331-1345.
39. SEEFELDER, S., H. EHRMAIER, G. SCHWEIZER and E. SEIGNER, 2000 Male and female genetic linkage map of hops, Humulus lupulus. Plant Breed. 119: 249-255.
40. SEWELL, M. M., B. K. SHERMAN and D. B. NEALE, 1999 A consensus map for loblolly pine (Pinus taeda L.). I. Construction and integration of individual linkage maps from two outbred three-generation pedigrees. Genetics 151: 321-330.
41. SHIMODA, N., E. W. KNAPIK, J. ZINITI, C. SIM, E. YAMADA et al., 1999 Zebrafish genetic map with 2000 microsatellite markers. Genomics 58: 219-232.
42. SOLIGNAC, M., D. VAUTRIN, E. BAUDRY, F. MOUGEL, A. LOISEAU et al., 2004 A microsatellite-based linkage map of the honeybee, Apis mellifera L. Genetics 167: 253-262.
43. STAM, P., and J. W. VAN OOIJEN, 1995 JoinMap: software for the calculation of genetic linkage maps, version 2.0. Centre for Plant Breeding and Reproductive Research, Wageningen, The Netherlands.
44. STEMSHORN, K. C., A. W. NOLTE and D. TAUTZ, 2005 A genetic map of Cottus gobio (Pisces, Teleostei) based on microsatellites can be linked to the physical map of Tetraodon nigroviridis. J. Evol. Biol. 18: 1619-1624.
45. VAN OOIJEN, J. W., and R. E. VOORRIPS, 2001 JoinMap: software for the calculation of genetic linkage maps, version 3.0. Plant Research International, Wageningen, The Netherlands.
46. VOORRIPS, R. E., 2002 MapChart: software for the graphical presentation of linkage maps and QTLs. J. Hered. 93: 77-78.
47. WALDBIESER, G. C., B. G. BOSWORTH, D. J. NONNEMAN and W. R. WOLTERS, 2001 A microsatellite-based genetic linkage map for channel catfish, Ictalurus punctatus. Genetics 158: 727-734.
48. WALSH, P. S., D. A. METZGER and R. HIGUCHI, 1991 Chelex 100 as a medium for simple extraction of DNA for PCR-based typing from forensic material. Biotechniques 10: 506-513.
49. WANG, C. M., Z. Y. ZHU, L. C. LO, F. FENG, G. LIN et al., 2007 A microsatellite linkage map of Barramundi, Lates calcarifer. Genetics 175: 907-915.
50. YU, Z., and X. GUO, 2006 Identification and mapping of disease-resistance QTLs in the eastern oyster, Crassostrea virginica Gmelin. Aquaculture 254: 160-170.
51. ZIMMERMAN, A. M., J. P. EVENHUIS, G. H. THORGAARD and S. S. RISTOW, 2004 A single major chromosomal region controls natural killer cell-like activity in rainbow trout. Immunogenetics 55: 825-835.