A microsatellite linkage map for Atlantic salmon (Salmo salar)

Animal Genetics

Volumn 35, Issue 2, 2004, Pages 98-105

  Gilbey, J ^a   Verspoor, E ^a   McLay, A ^a   Houlihan, D ^b  

^a MARINE LABORATORY   (United Kingdom)

^b UNIVERSITY OF ABERDEEN   (United Kingdom)

Author keywords

Aralar1; Atlantic salmon; Linkage map; Microsatellites; Sex specific recombination

Indexed keywords

CARRIER PROTEIN; MICROSATELLITE DNA; MITOCHONDRIAL PROTEIN; PRIMER DNA;

ANIMAL; ARTICLE; ATLANTIC SALMON; CHROMOSOME MAP; COMPARATIVE STUDY; FEMALE; GENETIC RECOMBINATION; GENETICS; MALE; NUCLEIC ACID DATABASE; SEX DIFFERENCE;

ANIMALS; CHROMOSOME MAPPING; DATABASES, NUCLEIC ACID; DNA PRIMERS; FEMALE; MALE; MEMBRANE TRANSPORT PROTEINS; MICROSATELLITE REPEATS; MITOCHONDRIAL PROTEINS; RECOMBINATION, GENETIC; SALMO SALAR; SEX FACTORS;

ANIMALIA; ONCORHYNCHUS MYKISS; SALMO; SALMO SALAR; SALMONIDAE; VERTEBRATA;

EID: 1842715739     PISSN: 02689146     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1365-2052.2004.01091.x     Document Type: Article

References (33)

1. Allendorf F.W. & Thorgaard G.H. (1984) Tetraploidy and the evolution of salmonid fishes. In: Evolutionary Genetics of Fishes (Ed. by B.J. Turner), pp. 1-16. Plenum Press, New York.
2. Cairney M., Taggart J.B. & Hoyheim B. (2000) Characterization of microsatellite and minisatellite loci in Atlantic salmon (Salmo salar L.) and cross-species amplification in other salmonids. Molecular Ecology 9, 2175-234.
3. Cnaani A., Ron M., Hulata G. & Seroussi E. (2002) Fishing in silico : searching for tilapia genes using sequences of microsatellite DNA markers. Animal Genetics 33, 468-85.
4. Don R.H., Cox P.T., Wainwright B.J., Baker K. & Mattick J.S. (1991) Touchdown PCR to circumvent spurious priming during gene amplification. Nucleic Acids Research 19, 4008.
5. Farber C.R. & Medrano J.F. (2003) Putative in silico mapping of DNA sequences to livestock genome maps using SSLP flanking sequences. Animal Genetics 34, 11-8.
6. Hartley S.E. (1987) The chromosomes of salmonid fishes. Biological Reviews 62, 197-214.
7. Herron B.J., Silva G.H. & Flaherty L. (1998) Putative assignment of ESTs to the genetic map by use of the SSLP database. Mammalian Genome 9, 1072-74.
8. Johnson K.R., Wright J.E. & May B. (1987) Linkage relationships reflecting ancestral tetraploidy in salmonid fish. Genetics 116, 579-91.
9. Kosambi D.D. (1944) The estimation of map distances from recombination values. Annals of Eugenics 12, 172-75.
10. Lander E.S., Green P., Abrahamson J., Barlow A. & Daly M.J. (1987) Mapmaker: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics 1, 174-81.
11. Lynch M. & Walsh B. (1998) Genetics and Analysis of Quantitative Traits. Sinauer Associates, Inc., MA, USA.
12. Martinez J.L., Moran P., Pendas A.M., Taggart J.B. & Garcia-Vazquez E. (1999a) Genetic characterization and chromosomal location of a single locus GT microsatellite from Atlantic salmon. Animal Genetics 30, 382-105.
13. Martinez J.L., Moran P. & Garcia-Vazquez E. (1999b) Dinucleotide repeat polymorphism at the SS4, SS6 and SS11 loci in Atlantic salmon (Salmo salar). Animal Genetics 30, 464-5.
14. May B. & Johnson K.R. (1990) Composite linkage map of salmonid fishes (Salvelinus, Salmo, Oncorhynchus). In: Genetic Maps (Ed. by S.J. O'Brien), pp. 151-60.
15. McConnell S.K., Oreilly P., Hamilton L., Wright J.N. & Bentzen P. (1995) Polymorphic microsatellite loci from Atlantic salmon (Salmo salar) - genetic differentiation of North-American and European populations. Canadian Journal of Fisheries and Aquatic Science 52, 1863-72.
16. Mullenbach R. (1989) An efficient salt-chloroform extraction of DNA from blood and tissues. Trends in Genetics 5, 391.
17. Nichols K.M., Young W.P., Danzmann R.G. et al. (2003) A consolidated linkage map for rainbow trout (Oncorhynchus mykiss). Genetics 34, 102-15.
18. O'Reilly P.T., Hamilton L.C., Mcconnell S.K. & Wright J.M. (1996) Rapid analysis of genetic variation in Atlantic salmon (Salmo salar) by PCR multiplexing of dinucleotide and tetranucleotide microsatellites. Canadian Journal of Fisheries and Aquatic Science 53, 2292-8.
19. Patterson S., Piertney S.B., Knox D., Gilbey J. & Verspoor E. Characterisation and PCR multiplexing of novel highly variable tetranucleotide Atlantic salmon (Salmo salar L.) microsatellites. Molecular Ecology in press.
20. Reeves R.H., Crowley M.R., O'Hara B.F. & Gearhart J.D. (1990) Sex, strain, and species differences affect recombination across an evolutionary conserved segment of mouse chromosome 16. Genomics 8, 141-8.
21. Reeves R.H., Crowley M.R., Moseley W.S. & Seldin M.F. (1991) Comparison of interspecific to intersubspecific backcrosses demonstrates species and sex differences in recombination frequency on mouse chromosome 16. Mammal Genome 1, 158-64.
22. Robinson W.P. (1996) The extent, mechanism and consequences of genetic variation for recombination rate. American Journal of Human Genetics 59, 1175-83.
23. Sakamoto T., Danzmann R.G., Gharbi K. et al. (2000) A microsatellite linkage map of rainbow trout (Oncorhynchus mykiss) characterized by large sex-specific differences in recombination rates. Genetics 155, 1331-15.
24. Sanchez J.A., Clabby C., Ramos D., Blanco G., Flavin F., Vazquez E. & Powell (1996) Protein and microsatellite single locus variability in Salmo salar L. (Atlantic salmon). Heredity 77, 423-32.
25. Slettan A., Olsaker I. & Lie O. (1995a) Atlantic salmon, Salmo salar, microsatellites at the SSOSL25, SSOSL85, SSOSL311, SSOSL417 loci. Animal Genetics 26, 277-85.
26. Slettan A., Olsaker I. & Lie O. (1995b) A polymorphic dinucleotide repeat microsatellite in Atlantic salmon, Salmo salar (SSOSL436). Animal Genetics 26, 365.
27. Slettan A., Olsaker I. & Lie O. (1996) Polymorphic Atlantic salmon, Salmo salar L., microsatellites at the SSOSL438, SSOSL439 and SSOSL444 loci. Animal Genetics 27, 57-64.
28. Slettan A., Olsaker I., & Lie O. (1997) Segregation studies and linkage analysis of Atlantic salmon microsatellites using haploid genetics. Heredity 78, 620-7.
29. Thorgaard G.H. (1983) Chromosomal differences among rainbow trout populations. Copeia 650-62.
30. Verspoor E. & Cole L.J. (1989) Genetically distinct sympatric populations of resident and anadromous Atlantic salmon, Salmo salar. Canadian Journal of Zoology 67, 1453-61.
31. Woram R.A., Gharbi K., Sakamoto T. et al. (2003) Comparative genome analysis of the primary sex-determining locus in salmonid fishes. Genome Research 13, 272-80.
32. Wright J.E., Johnson K.R., Hollister A. & May B. (1983) Meiotic models to explain classical linkage, pseudolinkage, and chromosome pairing in tetraploid derivative salmonid genomes. Isozymes: Current Topics in Biological and Medical Research 10, 239-60.
33. Young W.P., Wheeler P.A., Coryell V.H., Keim P. & Thorgaard G.H. (1998) A detailed linkage map of Rainbow trout produced using doubled haploids. Genetics 148, 839-50.