An AFLP-based approach for the identification of sex-linked markers in rainbow trout (Oncorhynchus mykiss)

Aquaculture

Volumn 247, Issue 1-4, 2005, Pages 35-43

  Felip, Alicia ^a,c   Young, William P ^b,d   Wheeler, Paul A ^a   Thorgaard, Gary H ^a  

^a WASHINGTON STATE UNIVERSITY   (United States)

^b NORTHERN ARIZONA UNIVERSITY   (United States)

^c CSIC Instituto de Acuicultura de Torre de la Sal IATS   (Spain)

^d Nez Perce Tribe   (United States)

Author keywords

AFLP; Oncorhynchus mykiss; Rainbow trout; SCAR; Sex determination; Sex marker

Indexed keywords

MOLECULAR ANALYSIS; SALMONID; SEX DETERMINATION;

MYKISS; ONCORHYNCHUS MYKISS; SALMONIDAE;

EID: 19744370768     PISSN: 00448486     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.aquaculture.2005.02.014     Document Type: Conference Paper

References (36)

1. 2 locus to a simple, codominant, PCR-based marker form Theor. Appl. Genet. 97 1998 960 967
2. J.P. Brunelli, and G.H. Thorgaard A new Y-chromosome-specific marker for Pacific salmon Trans. Am. Fish. Soc. 133 2004 1247 1253
3. J.J. Bull Evolution of sex determining mechanisms 1983 Benjamin/Cummings Menlo Park, CA 316 pp.
4. N. Colihueque, P. Iturra, F. Estay, and N.F. Díaz Diploid chromosome number variations and sex chromosome polymorphism in five cultured strains of rainbow trout (Oncorhynchus mykiss) Aquaculture 198 2001 63 77
5. R.H. Devlin, and Y. Nagahama Sex determination and sex differentiation in fish: an overview of genetic, physiological, and environmental influences Aquaculture 208 2002 191 364
6. R.H. Devlin, C.A. Biagi, and D.E. Smailus Genetic mapping of Y-chromosomal DNA markers in Pacific salmon Genetica 111 2001 43 58
7. A. Felip, A. Fujiwara, W.P. Young, P.A. Wheeler, M. Noakes, R.B. Phillips, and G.H. Thorgaard Polymorphism and differentiation of rainbow trout Y chromosomes Genome 47 2004 1105 1113
8. R. Griffiths, and K. Orr The use of amplified fragment length polymorphism (AFLP) in the isolation of sex-specific markers Mol. Ecol. 8 1999 671 674
9. R. Griffiths, K.J. Orr, A. Adam, and I. Barber DNA sex identification in the three-spined stickleback J. Fish Biol. 57 2000 1331 1334
10. P. Iturra, M. Bagley, N. Vergara, P. Imbert, and J.F. Medrano Development and characterization of DNA sequence OmyP9 associated with the sex chromosomes in rainbow trout Heredity 86 2001 412 419
11. P. Iturra, N. Lam, M. de la Fuente, N. Vergara, and J.F. Medrano Characterization of sex chromosomes in rainbow trout and coho salmon using fluorescence in situ hybridization (FISH) Genetica 111 2001 125 131
12. J. King, I.P. Armstead, I.S. Donnison, H.M. Thomas, R.N. Jones, M.J. Kearsey, L.A. Roberts, A. Thomas, W.G. Morgan, and I.P. King Physical and genetic mapping in the Grasses Lolium perenne and Festuca pratensis Genetics 161 2002 315 324
13. S. Lebel-Hardenack, E. Hauser, T.F. Law, J. Schmid, and S.R. Grant Mapping of sex determining loci on the white campion (Silene latifolia) Y chromosome using amplified fragment length polymorphism Genetics 160 2002 717 725
14. M. Matsuda, Y. Nagahama, A. Shinomiya, T. Sato, C. Matsuda, T. Kobayashi, C.E. Morrey, N. Shibata, S. Asakawa, N. Shimizu, H. Hori, S. Hamaguchi, and M. Sakaizumi DMY is a specific DM-domain gene required for male development in the medaka fish Nature 417 2002 559 563
15. M. Matsuda, T. Sato, Y. Toyazaki, Y. Nagahama, S. Hamaguchi, and M. Sakaizumi Oryzias curvinotus has DMY, a gene that is required for male development in the medaka, O. latipes Zool. Sci. 20 2003 159 161
16. R.W. Michelmore, I. Paran, and R.V. Kesseli Identification of markers linked to disease-resistance genes by bulked segregant analysis: a rapid method to detect markers in specific genomic regions by using segregating populations Proc. Natl. Acad. Sci. U. S. A. 88 1991 9828 9832
17. K.M. Nichols, W.P. Young, R.G. Danzmann, B.D. Robison, C. Rexroad, M. Noakes, R.B. Phillips, P. Bentzen, I. Spies, K. Knudsen, F.W. Allendorf, B.M. Cunningham, J. Brunelli, H. Zhang, S. Ristow, R. Drew, K.H. Brown, P.A. Wheeler, and G.H. Thorgaard A consolidated linkage map for rainbow trout, Oncorhynchus mykiss Anim. Genet. 34 2 2003 102 115
18. Y. Palti, S. Gahr, J.D. Hansen, and C.E. Rexroad III Characterization of a new BAC library for rainbow trout: evidence for multi-locus duplication Anim. Genet. 35 2004 130 133
19. J.E. Parsons, and G.H. Thorgaard Production of androgenetic diploid rainbow trout J. Heredity 76 1985 177 181
20. A. Peil, H. Flachowsky, E. Schumann, and W.E. Weber Sex-linked AFLP markers indicate a pseudoautosomal region in hemp (Cannabis sativa L.) Theor. Appl. Genet. 107 2003 102 109
21. I. Pejic, P. Ajmone-Marsan, M. Morgante, V. Kozumplick, P. Castiglioni, G. Taramino, and M. Motto Comparative analysis of genetic similarity among maize inbred lines detected by RFLPs, RAPDs, SSRs, and AFLPs Theor. Appl. Genet. 97 1998 1248 1255
22. X. Qi, P. Stam, and P. Lindhout Use of locus-specific AFLP markers to construct a high-density molecular map in barley Theor. Appl. Genet. 96 1998 376 384
23. B.D. Robison, P.A. Wheeler, and G.H. Thorgaard Variation in development rate among clonal lines of rainbow trout (Oncorhynchus mykiss) Aquaculture 173 1999 131 141
24. B.D. Robison, P.A. Wheeler, K. Sundin, P. Sikka, and G.H. Thorgaard Composite interval mapping reveals a major locus influencing embryonic development rate in rainbow trout (Oncorhynchus mykiss) J. Heredity 92 2001 16 22
25. T. Sakamoto, R.G. Danzmann, K. Gharbi, P. Howard, A. Ozaki, S.K. Khoo, R.A. Woram, N. Okamoto, M.M. Ferguson, L.E. Holm, R. Guyomard, and B. Hoyheim A microsatellite linkage map of rainbow trout (Oncorhynchus mykiss) characterized by large sex-specific differences in recombination rates Genetics 155 2000 1331 1345
26. Y.D. Tan, C. Wan, Y. Zhu, C. Lu, Z. Xiang, and H.W. Deng An amplified fragment length polymorphism map of the silkworm Genetics 157 2001 1277 1284
27. G.H. Thorgaard Heteromorphic sex chromosomes in male rainbow trout Science 196 1977 900 902
28. G.H. Thorgaard Chromosomal differences among rainbow trout populations Copeia 1983 3 1983 650 662
29. G.H. Thorgaard, G.S. Bailey, D. Williams, D.R. Buhler, S.L. Kaattari, S.S. Ristow, J.D. Hansen, J.R. Wintow, J.L. Bartholomew, J.J. Nagler, P.J. Walsh, M.M. Vijayan, R.H. Devlin, R.W. Hardy, K.E. Overturf, W.P. Young, B.D. Robison, C. Rexroad, and Y. Palti Status and opportunities for genomics research with rainbow trout Comp. Biochem. Physiol., B 133 2002 609 646
30. T. Ueda, and Y. Ojima Sex chromosomes in the rainbow trout, Salmo gairdneri Bull. Jpn. Soc. Sci. Fish. 50 1984 1499 1504
31. J.N. Volff, M. Kondo, and M. Schartl Medaka dmY/dmrt1Y is not the universal primary sex-determining gene in fish Trends Genet. 19 4 2003 196 199
32. P. Vos, R. Hogers, M. Bleeker, M. Reijans, T. Van de lee, M. Hornes, A. Frijters, J. Pot, J. Peleman, M. Kuiper, and M. Zabeau AFLP: a new technique for DNA fingerprinting Nucleic Acids Res. 23 21 1995 4407 4414
33. R.A. Woram, K. Gharbi, T. Sakamoto, B. Hoyheim, L.E. Holm, K. Naish, C. McGowan, M.M. Ferguson, R.B. Phillips, J. Stein, R. Guyomard, M. Cairney, J.B. Taggart, R. Powell, W. Davidson, and R.G. Danzmann Comparative genome analysis of the primary sex-determining locus in salmonid fishes Genome Res. 13 2 2003 272 280
34. M. Xu, E. Huaracha, and S. Korban Development of sequence-characterized amplified regions (SCARs) from amplified fragment length polymorphism (AFLP) markers tightly linked to the Vf gene in apple Genome 44 2001 63 70
35. W.P. Young, P.A. Wheeler, R.D. Fields, and G.H. Thorgaard DNA fingerprinting confirms isogenecity of androgenetically derived rainbow trout lines J. Heredity 87 1996 77 81
36. W.P. Young, P.A. Wheeler, V.H. Coryell, P. Keim, and G.H. Thorgaard A detailed linkage map of rainbow trout produced using doubled haploids Genetics 148 1998 839 850