A genetic linkage map for the tiger pufferfish, Takifugu rubripes

Genetics

Volumn 171, Issue 1, 2005, Pages 227-238

  Kai, Wataru ^a   Kikuchi, Kiyoshi ^a   Fujita, Masashi ^a   Suetake, Hiroaki ^a   Fujiwara, Atushi ^b   Yoshiura, Yasutoshi ^b   Ototake, Mitsuru ^b   Venkatesh, Byrappa ^c   Miyaki, Kadoo ^d   Suzuki, Yuzuru ^a  

^a UNIVERSITY OF TOKYO   (Japan)

^b FISHERIES RESEARCH AGENCY   (Japan)

^c INSTITUTE OF MOLECULAR AND CELL BIOLOGY   (Singapore)

^d NAGASAKI PREFECTURAL INSTITUTE OF FISHERIES   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

DNA;

ANIMAL TISSUE; ARTICLE; FEMALE; FISH; GENE MAPPING; GENETIC LINKAGE; GENETIC RECOMBINATION; GENETIC VARIABILITY; GENOME; GENOTYPE; HOX GENE; MALE; NONHUMAN; PHENOTYPIC VARIATION; PRIORITY JOURNAL; SEX DIFFERENCE; SPECIES DIFFERENTIATION; ZEBRA FISH;

ANIMALS; CHROMOSOME MAPPING; FEMALE; FISH PROTEINS; GENOME; GENOTYPE; HOMEODOMAIN PROTEINS; HUMANS; LINKAGE (GENETICS); MALE; MICE; MICROSATELLITE REPEATS; MULTIGENE FAMILY; ORYZIAS; PHENOTYPE; RECOMBINATION, GENETIC; SEX FACTORS; SPECIES SPECIFICITY; SYNTENY; TAKIFUGU; VARIATION (GENETICS); ZEBRAFISH;

MAMMALIA; TAKIFUGU; TAKIFUGU RUBRIPES; TELEOSTEI; TETRAODONTIDAE; VERTEBRATA;

EID: 26444457496     PISSN: 00166731     EISSN: 00166731     Source Type: Journal    
DOI: 10.1534/genetics.105.042051     Document Type: Article

References (46)

1. AMORES, A., A. FORCE, Y. L. YAN, L. JOLY, C. AMEMIYA et al., 1998 Zebrafish hox clusters and vertebrate genome evolution. Science 282: 1711-1714.
2. AMORES, A., T. SUZUKI, Y. L. YAN, J. POMEROY, A. SINGER et al., 2004 Developmental roles of pufferfish Hox clusters and genome evolution in ray-fin fish. Genome Res. 14: 1-10.
3. APARICIO, S., J. CHAPMAN, E. STUPKA, N. PUTNAM, J. M. CHIA et al., 2002 Whole-genome shotgun assembly and analysis of the genome of Fugu rubripes. Science 297: 1301-1310.
4. ASAHIDA, T., T. KOBAYASHI, K. SAITOH and I. NAKAYAMA, 1996 Tissue preservation and total DNA extraction from fish stored at ambient temperature using buffers containing high concentration of urea. Fish. Sci. 62: 727-730.
5. BOURQUE, G., P. A. PEVZNER and G. TESLER, 2004 Reconstructing the genomic architecture of ancestral mammals: lessons from human, mouse, and rat genomes. Genome Res. 14: 507-516.
6. BRENNER, S., G. ELGAR, R. SANDFORD, A. MACRAE, B. VENKATESH et al., 1993 Characterization of the pufferfish (Fugu) genome as a compact model vertebrate genome. Nature 366: 265-268.
7. CHRISTOFFELS, A., E. G. KOH, J. M. CHIA, S. BRENNER, S. APARICIO et al., 2004 Fugu genome analysis provides evidence for a whole-genome duplication early during the evolution of ray-finned fishes. Mol. Biol. Evol. 21: 1146-1151.
8. CRESKO, W. A., A. AMORES, C. WILSON, J. MURPHY, M. CURREY et al., 2004 Parallel genetic basis for repeated evolution of armor loss in Alaskan threespine stickleback populations. Proc. Natl. Acad. Sci. USA 101: 6050-6055.
9. CRNOGORAC-JURCEVIC, T., J. R. BROWN, H. LEHRACH and L. C. SCHALKWYK, 1997 Tetraodon fluviatilis, a new puffer fish model for genome studies. Genomics 41: 177-184.
10. DIB, C., S. FAURE, C. FIZAMES, D. SAMSON, N. DROUOT et al., 1996 A comprehensive genetic map of the human genome based on 5,264 microsatellites. Nature 380: 152-154.
11. DIETRICH, W. F., J. MILLER, R. STEEN, M. A. MERCHANT, D. DAMRONBOLES et al., 1996 A comprehensive genetic map of the mouse genome. Nature 380: 149-152.
12. FUJITA, S., 1967 Artificial interspecific and intergeneric hybridizations among the Tetraodontid puffere (preliminary report). Jpn. J. Michurin Biol. 3: 5-11.
13. GALTIER, N., M. GOUY and C. GAUTIER, 1996 SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phylogeny. Comput. Appl. Biosci. 12: 543-548.
14. GLAZIER, A. M., J. H. NADEAU and T. J. AITMAN, 2002 Finding genes that underlie complex traits. Science 298: 2345-2349.
15. GRUTZNER, F., G. LUTJENS, C. ROVIRA, D. W. BARNES, H. H. ROPERS et al., 1999 Classical and molecular cytogenetics of the pufferfish Tetraodon nigroviridis. Chromosome Res. 7: 655-662.
16. HEDGES, S. B., and S. KUMAR, 2002 Genomics: vertebrate genomes compared. Science 297: 1283-1285.
17. JAILLON, O., J. M. AURY, F. BRUNET, J. L. PETIT, N. STANGE-THOMANN et al., 2004 Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype. Nature 431: 946-957.
18. KENT, W. J., 2002 BLAT-the BLAST-like alignment tool. Genome Res. 12: 656-664.
19. KOCHER, T. D., 2004 Adaptive evolution and explosive speciation: the cichlid fish model. Nat. Rev. Genet. 5: 288-298.
20. KUMAZAWA, Y., M. YAMAGUCHI and M. NISHIDA, 1999 Mitochondrial molecular clocks and the origin of euteleostean biodiversity: familial radiation of perciforms may have predated the Cretaceous/Tertiary boundary, pp. 35-52 in The Biology of Biodiversity, edited by M. KATO. Springer-Verlag, Berlin/Heidelberg, Germany/New York.
21. LADJALI-MOHAMMEDI, K., A. GRAPIN-BOTTON, M. A. BONNIN and N. M. LE DOUARIN, 2001 Distribution of HOX genes in the chicken genome reveals a new segment of conservation between human and chicken. Cytogenet. Cell Genet. 92: 157-161.
22. LANDER, E. S., P. GREEN, J. ABRAHAMSON, A. BARLOW, M. J. DALY et al., 1987 MAPMAKER: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics 1: 174-181.
23. LARHAMMAR, D., L. G. LUNDIN and F. HALLBOOK, 2002 The human Hox-bearing chromosome regions did arise by block or chromosome (or even genome) duplications. Genome Res. 12: 1910-1920.
24. MARKLUND, L., M. JOHANSSON MOLLER, B. HOYHEIM, W. DAVIES, M. FREDHOLM et al., 1996 A comprehensive linkage map of the pig based on a wild pig-Large White intercross. Anim. Genet. 27: 255-269.
25. MATSUURA, K., 1990 The pufferfish genus Fugu Abe, 1952, a junior subjective synonym of Takifugu Abe, 1949. Bull. Nat. Sci. Mus Tokyo Ser. A 16: 15-20.
26. MATSUYAMA, M., H. CHUDA, Y. IKEDA, H. TANAKA and S. MATSUURA, 1997 Induction of ovarian maturation and ovulation in cultured tigger puffer Takifugu rubripes by differential hormonal treatments. Suisanzousyoku 45: 67-73.
27. MIYAKI, K., 1992 Biological study of hybrid pufferfishes of the genus Takifugu, Tetraodontidae. Ph.D. Thesis, Nagasaki University, Nagasaki, Japan.
28. MIYAKI, K., O. TABETA and H. KAYANO, 1995 Karyotypes in six species of pufferfishes genus Takifugu (Tetraodontidae, Tetraodontiformes). Fish. Sci. 61: 594-598.
29. MIYAKI, K., K. YOSHIKOSHI and O. TABETA, 1996 Transmission electron microscopic observations on spermatozoa in seven species of puffers genus Takifugu (Tetraodontidae, Tetraodontiformes). Fish. Sci. 62: 1996.
30. NARUSE, K., S. FUKAMACHI, H. MITANI, M. KONDO, T. MATSUOKA et al., 2000 A detailed linkage map of medaka, Oryzias latipes: comparative genomics and genome evolution. Genetics 154: 1773-1784.
31. NARUSE, K., M. TANAKA, K. MITA, A. SHIMA, J. POSTLETHWAIT et al., 2004 A medaka gene map: the trace of ancestral vertebrate proto-chromosomes revealed by comparative gene mapping. Genome Res. 14: 820-828.
32. NEFF, M. W., K. W. BROMAN, C. S. MELLERSH, K. RAY, G. M. ACLAND et al., 1999 A second-generation genetic linkage map of the domestic dog, Canis familiaris. Genetics 151: 803-820.
33. NELSON, J. S., 1994 Fishes of the World. John Wiley, New York.
34. OGAWA, 1991 Redescription of Heterobothrium tetrodonis (Goto, 1984) (Monogenea: Diclidophoridae) and other related new species from puffers of genus Takifugu (Teleost: tetraodontidae). Jpn. J. Parasitol. 40: 388-396.
35. SAKAMOTO, T., R. G. DANZMANN, K. GHARBI, P. HOWARD, A. OZAKI et al., 2000 A microsatellite linkage map of rainbow trout (Oncorhynchus mykiss) characterized by large sex-specific differences in recombination rates. Genetics 155: 1331-1345.
36. SCOTT, M. P., 1992 Vertebrate homeobox gene nomenclature. Cell 71: 551-553.
37. SEWELL, M. M., B. K. SHERMAN and D. B. NEALE, 1999 A consensus map for loblolly pine (Pinus laeda L.). I. Construction and integration of individual linkage maps from two outbred three-generation pedigrees. Genetics 151: 321-330.
38. SINGER, A., H. PERLMAN, Y. YAN, C. WALKER, G. CORLEY-SMITH et al., 2002 Sex-specific recombination rates in zebrafish (Danio rerio). Genetics 160: 649-657.
39. STATISTICS AND INFORMATION DEPARTMENT, 2001 Annual Statistics on Fisheries and Aquaculture Production 2001. Association of Agricultural and Forestry Statistics, Tokyo.
40. SUZUKI, T., T. KUROKAWA, H. HASHIMOTO and M. SUGIYAMA, 2002 cDNA sequence and tissue expression of Fugu rubripes prion protein-like: a candidate for the teleost orthologue of tetrapod PrPs. Biochem. Biophys. Res. Commun. 294: 912-917.
41. TAKAOKA, O., S. FURUTA, M. GOUDA, T. IDO, Y. MUKAI et al., 1998 Induced spawning of cultured tigger puffer in winter and fall. Bull. Fish. Lab. Kinki Univ. 6: 167-170.
42. THOMPSON, J. D., T. J. GIBSON, F. PLEWNIAK, F. JEANMOUGIN and D. G. HIGGINS, 1997 The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25: 4876-4882.
43. TYLER, J. C., and L. SORBINI, 1996 New superfamily and three new families of tetraodontiform fishes from the Upper Cretaceous: the earliest and most morphologically primitive plectognaths. Smithsonian Contrib. Paleobiol. 82: 1-59.
44. UNO, Y., 1955 Spawning habit and early development of a puffer, Fugu (Torafugu) niphobles (Jordan et Snyder). J. Tokyo Univ. Fish. 41: 169-183.
45. VENKATESH, B., P. GILLIGAN and S. BRENNER, 2000 Fugu: a compact vertebrate reference genome. FEBS Lett. 476: 3-7.
46. WOODS, I. G., P. D. KELLY, F. CHU, P. NGO-HAZELETT, Y. L. YAN et al., 2000 A comparative map of the zebrafish genome. Genome Res. 10: 1903-1914.