-
1
-
-
77953626646
-
Genomic screening with RNAi: Results and challenges
-
Mohr, S.; Bakal, C.; Perrimon, N. Genomic screening with RNAi: Results and challenges. Annu. Rev. Biochem., 2010, 79, 37-64.
-
(2010)
Annu. Rev. Biochem.
, vol.79
, pp. 37-64
-
-
Mohr, S.1
Bakal, C.2
Perrimon, N.3
-
2
-
-
67249143012
-
Host cell factors in HIV replication: Meta-analysis of genome-wide studies
-
Bushman, F. D.; Malani, N.; Fernandes, J.; D'Orso, I.; Cagney, G.; Diamond, T. L.; Zhou, H.; Hazuda, D. J.; Espeseth, A. S.; König, R.; Bandyopadhyay, S.; Ideker, T.; Goff, S. P.; Krogan, N. J.; Frankel, A. D.; Young, J. A.; Chanda S. K. Host cell factors in HIV replication: meta-analysis of genome-wide studies. PLoS. Patho., 2009, 5(5), e1000437.
-
(2009)
PLoS. Patho.
, vol.5
, Issue.5
-
-
Bushman, F.D.1
Malani, N.2
Fernandes, J.3
D'Orso, I.4
Cagney, G.5
Diamond, T.L.6
Zhou, H.7
Hazuda, D.J.8
Espeseth, A.S.9
König, R.10
Bandyopadhyay, S.11
Ideker, T.12
Goff, S.P.13
Krogan, N.J.14
Frankel, A.D.15
Young, J.A.16
Chanda, S.K.17
-
3
-
-
78651469589
-
Identifying HIV-1 host cell factors by genome-scale RNAi screening
-
Pache, L.; König, R.; Chanda, S. K. Identifying HIV-1 host cell factors by genome-scale RNAi screening. Methods, 2011, 53(1), 3-12.
-
(2011)
Methods
, vol.53
, Issue.1
, pp. 3-12
-
-
Pache, L.1
König, R.2
Chanda, S.K.3
-
4
-
-
84858376519
-
Scientists' elusive goal: Reproducing study results
-
Naik, G. Scientists' Elusive Goal: Reproducing Study Results. Wall Street Journal, 2011.
-
(2011)
Wall Street Journal
-
-
Naik, G.1
-
5
-
-
52949130695
-
Global analysis of hostpathogen interactions that regulate early-stage HIV-1 replication
-
König, R.; Zhou, Y.; Elleder, D.; Diamond, T. L.; Bonamy, G. M.; Irelan, J. T.; Chiang, C. Y.; Tu, B. P.; DeJesus, P. D.; Lilley, C. E.; Seidel, S.; Opaluch, A. M.; Caldwell, J. S.; Weitzman, M. D.; Kuhen, K. L.; Bandyopadhyay, S.; Ideker, T.; Orth, A. P.; Miraglia, L. J.; Bushman, F. D.; Young, J. A.; Chanda, S. K. Global analysis of hostpathogen interactions that regulate early-stage HIV-1 replication. Cell, 2008, 135(1), 49-60.
-
(2008)
Cell
, vol.135
, Issue.1
, pp. 49-60
-
-
König, R.1
Zhou, Y.2
Elleder, D.3
Diamond, T.L.4
Bonamy, G.M.5
Irelan, J.T.6
Chiang, C.Y.7
Tu, B.P.8
De Jesus, P.D.9
Lilley, C.E.10
Seidel, S.11
Opaluch, A.M.12
Caldwell, J.S.13
Weitzman, M.D.14
Kuhen, K.L.15
Bandyopadhyay, S.16
Ideker, T.17
Orth, A.P.18
Miraglia, L.J.19
Bushman, F.D.20
Young, J.A.21
Chanda, S.K.22
more..
-
6
-
-
39349097864
-
Identification of host proteins required for HIV infection through a functional genomic screen
-
DOI 10.1126/science.1152725
-
Brass, A. L.; Dykxhoorn, D. M.; Benita, Y.; Yan, N.; Engelman, A.; Xavier, R. J.; Lieberman, J.; Elledge, S. J. Identification of host proteins required for HIV infection through a functional genomic screen. Science, 2008, 319(5865), 921-926. (Pubitemid 351263756)
-
(2008)
Science
, vol.319
, Issue.5865
, pp. 921-926
-
-
Brass, A.L.1
Dykxhoorn, D.M.2
Benita, Y.3
Yan, N.4
Engelman, A.5
Xavier, R.J.6
Lieberman, J.7
Elledge, S.J.8
-
7
-
-
55249088255
-
Genome-scale RNAi screen for host factors required for HIV replication
-
Zhou, H.; Xu, M.; Huang, Q.; Gates, A. T.; Zhang, X. D.; Castle, J. C.; Stec, E.; Ferrer, M.; Strulovici, B.; Hazuda, D. J.; Espeseth, A. S. Genome-scale RNAi screen for host factors required for HIV replication. Cell Host Microbe., 2008, 4(5), 495-504.
-
(2008)
Cell Host Microbe.
, vol.4
, Issue.5
, pp. 495-504
-
-
Zhou, H.1
Xu, M.2
Huang, Q.3
Gates, A.T.4
Zhang, X.D.5
Castle, J.C.6
Stec, E.7
Ferrer, M.8
Strulovici, B.9
Hazuda, D.J.10
Espeseth, A.S.11
-
8
-
-
67749148923
-
A genomewide short hairpin RNA screening of jurkat T-cells for human proteins contributing to productive HIV-1 replication
-
Yeung, M. L.; Houzet, L.; Yedavalli, V. S.; Jeang, K. T. A genomewide short hairpin RNA screening of jurkat T-cells for human proteins contributing to productive HIV-1 replication. J. Biol. Chem., 2009, 284(29), 19463-19473.
-
(2009)
J. Biol. Chem.
, vol.284
, Issue.29
, pp. 19463-19473
-
-
Yeung, M.L.1
Houzet, L.2
Yedavalli, V.S.3
Jeang, K.T.4
-
9
-
-
65849111219
-
Synthetic lethal interaction between oncogenic KRAS dependency and STK33 suppression in human cancer cells
-
Scholl, C.; Fröhling, S.; Dunn, I. F.; Schinzel, A. C.; Barbie, D. A.; Kim, S. Y.; Silver, S. J.; Tamayo, P.; Wadlow, R. C.; Ramaswamy, S.; Döhner, K.; Bullinger, L.; Sandy, P.; Boehm, J. S.; Root, D. E.; Jacks, T.; Hahn, W. C.; Gilliland, D. G. Synthetic lethal interaction between oncogenic KRAS dependency and STK33 suppression in human cancer cells. Cell, 2009, 137(5), 821-834.
-
(2009)
Cell
, vol.137
, Issue.5
, pp. 821-834
-
-
Scholl, C.1
Fröhling, S.2
Dunn, I.F.3
Schinzel, A.C.4
Barbie, D.A.5
Kim, S.Y.6
Silver, S.J.7
Tamayo, P.8
Wadlow, R.C.9
Ramaswamy, S.10
Döhner, K.11
Bullinger, L.12
Sandy, P.13
Boehm, J.S.14
Root, D.E.15
Jacks, T.16
Hahn, W.C.17
Gilliland, D.G.18
-
10
-
-
80052187354
-
STK33 kinase activity is nonessential in KRAS-dependent cancer cells
-
Babij, C.; Zhang, Y.; Kurzeja, R. J.; Munzli, A.; Shehabeldin, A.; Fernando, M.; Quon, K.; Kassner, P. D.; Ruefli-Brasse, A. A.; Watson, V. J.; Fajardo, F.; Jackson, A.; Zondlo, J.; Sun, Y.; Ellison, A. R.; Plewa, C. A.; San, M. T.; Robinson, J.; McCarter, J.; Schwandner, R.; Judd, T.; Carnahan, J.; Dussault, I. STK33 kinase activity is nonessential in KRAS-dependent cancer cells. Cancer Res., 2011, 71(17), 5818-5826.
-
(2011)
Cancer Res.
, vol.71
, Issue.17
, pp. 5818-5826
-
-
Babij, C.1
Zhang, Y.2
Kurzeja, R.J.3
Munzli, A.4
Shehabeldin, A.5
Fernando, M.6
Quon, K.7
Kassner, P.D.8
Ruefli-Brasse, A.A.9
Watson, V.J.10
Fajardo, F.11
Jackson, A.12
Zondlo, J.13
Sun, Y.14
Ellison, A.R.15
Plewa, C.A.16
San, M.T.17
Robinson, J.18
McCarter, J.19
Schwandner, R.20
Judd, T.21
Carnahan, J.22
Dussault, I.23
more..
-
11
-
-
68349112682
-
Statistical methods for analysis of high-throughput RNA interference screens
-
Birmingham, A.; Selfors, L. M.; Forster, T.; Wrobel, D.; Kennedy, C. J.; Shanks, E.; Santoyo-Lopez, J.; Dunican, D. J.; Long, A.; Kelleher, D.; Smith, Q.; Beijersbergen, R. L.; Ghazal, P.; Shamu, C. E. Statistical methods for analysis of high-throughput RNA interference screens. Nat. Methods, 2009, 6(8), 569-575.
-
(2009)
Nat. Methods
, vol.6
, Issue.8
, pp. 569-575
-
-
Birmingham, A.1
Selfors, L.M.2
Forster, T.3
Wrobel, D.4
Kennedy, C.J.5
Shanks, E.6
Santoyo-Lopez, J.7
Dunican, D.J.8
Long, A.9
Kelleher, D.10
Smith, Q.11
Beijersbergen, R.L.12
Ghazal, P.13
Shamu, C.E.14
-
12
-
-
34249905471
-
The use of strictly standardized mean difference for hit selection in primary RNA interference high-throughput screening experiments
-
DOI 10.1177/1087057107300646
-
Zhang, X. D.; Ferrer, M.; Espeseth, A. S.; Marine, S. D.; Stec, E. M.; Crackower, M. A.; Holder, D. J.; Heyse, J. F.; Strulovici, B. The use of strictly standardized mean difference for hit selection in primary RNA interference high-throughput screening experiments. J. Biomol. Screen., 2007, 12(4), 497-509. (Pubitemid 46871831)
-
(2007)
Journal of Biomolecular Screening
, vol.12
, Issue.4
, pp. 497-509
-
-
Zhang, X.D.1
Ferrer, M.2
Espeseth, A.S.3
Marine, S.D.4
Stec, E.M.5
Crackower, M.A.6
Holder, D.J.7
Heyse, J.F.8
Strulovici, B.9
-
13
-
-
35848929692
-
A probability-based approach for the analysis of large-scale RNAi screens
-
DOI 10.1038/nmeth1089, PII NMETH1089
-
König, R.; Chiang, C. Y.; Tu, B. P.; Yan, S. F.; DeJesus, P. D.; Romero, A.; Bergauer, T.; Orth, A.; Krueger, U.; Zhou, Y.; Chanda, S. K. A probability-based approach for the analysis of large-scale RNAi screens. Nat. Methods, 2007, 4(10), 847-849. (Pubitemid 350055583)
-
(2007)
Nature Methods
, vol.4
, Issue.10
, pp. 847-849
-
-
Konig, R.1
Chiang, C.-Y.2
Tu, B.P.3
Yan, S.F.4
DeJesus, P.D.5
Romero, A.6
Bergauer, T.7
Orth, A.8
Krueger, U.9
Zhou, Y.10
Chanda, S.K.11
-
14
-
-
0037685280
-
Expression profiling reveals off-target gene regulation by RNAi
-
DOI 10.1038/nbt831
-
Jackson, A. L.; Bartz, S. R.; Schelter, J.; Kobayashi, S. V.; Burchard, J.; Mao, M.; Li, B.; Cavet, G.; Linsley, P. S. Expression profiling reveals off-target gene regulation by RNAi. Nat. Biotech., 2003, 21(6), 635-637. (Pubitemid 36638089)
-
(2003)
Nature Biotechnology
, vol.21
, Issue.6
, pp. 635-637
-
-
Jackson, A.L.1
Bartz, S.R.2
Schelter, J.3
Kobayashi, S.V.4
Burchard, J.5
Mao, M.6
Li, B.7
Cavet, G.8
Linsley, P.S.9
-
15
-
-
33646188259
-
3' UTR seed matches, but not overall identity, are associated with RNAi offtargets
-
Birmingham, A.; Anderson, E. M.; Reynolds, A.; Ilsley-Tyree, D.; Leake, D.; Fedorov, Y.; Baskerville, S.; Maksimova, E.; Robinson, K.; Karpilow, J.; Marshall, W. S.; Khvorova, A. 3' UTR seed matches, but not overall identity, are associated with RNAi offtargets. Nat. Methods, 2006, 3, 199-204.
-
(2006)
Nat. Methods
, vol.3
, pp. 199-204
-
-
Birmingham, A.1
Anderson, E.M.2
Reynolds, A.3
Ilsley-Tyree, D.4
Leake, D.5
Fedorov, Y.6
Baskerville, S.7
Maksimova, E.8
Robinson, K.9
Karpilow, J.10
Marshall, W.S.11
Khvorova, A.12
-
16
-
-
77949473897
-
Systematic analysis of off-target effects in an RNAi screen reveals microRNAs affecting sensitivity to TRAIL-induced apoptosis
-
Sudbery, I.; Enright, A. J.; Fraser, A. G.; Dunham, I. Systematic analysis of off-target effects in an RNAi screen reveals microRNAs affecting sensitivity to TRAIL-induced apoptosis. BMC Genomics, 2010, 11, 175.
-
(2010)
BMC Genomics
, vol.11
, pp. 175
-
-
Sudbery, I.1
Enright, A.J.2
Fraser, A.G.3
Dunham, I.4
-
17
-
-
42449152837
-
Experimental validation of the importance of seed complement frequency to siRNA specificity
-
DOI 10.1261/rna.704708
-
Anderson, E. M.; Birmingham, A.; Baskerville, S.; Reynolds, A.; Maksimova, E.; Leake, D.; Fedorov, Y.; Karpilow, J.; Khvorova, A. Experimental Validation of the Importance of Seed Complement Frequency to siRNA Specificity. RNA, 2008, 14(5), 853-861. (Pubitemid 351574907)
-
(2008)
RNA
, vol.14
, Issue.5
, pp. 853-861
-
-
Anderson, E.M.1
Birmingham, A.2
Baskerville, S.3
Reynolds, A.4
Maksimova, E.5
Leake, D.6
Fedorov, Y.7
Karpilow, J.8
Khvorova, A.9
-
18
-
-
84859218649
-
A bioinformatics method identifies prominent off-targeted transcripts in RNAi screens
-
Sigoillot, F. D.; Lyman, S.; Huckins, J. F.; Adamson, B.; Chung, E.; Quattrochi, B.; King, R. W. A bioinformatics method identifies prominent off-targeted transcripts in RNAi screens. Nat. Methods, 2012, 9(4), 363-366.
-
(2012)
Nat. Methods
, vol.9
, Issue.4
, pp. 363-366
-
-
Sigoillot, F.D.1
Lyman, S.2
Huckins, J.F.3
Adamson, B.4
Chung, E.5
Quattrochi, B.6
King, R.W.7
-
19
-
-
84859065278
-
Common seed analysis to identify off-target effects in siRNA screens
-
Marine, S.; Bahl, A.; Ferrer, M.; Buehler, E. Common seed analysis to identify off-target effects in siRNA screens. J. Biomol. Screen., 2012, 17(3), 370-378.
-
(2012)
J. Biomol. Screen.
, vol.17
, Issue.3
, pp. 370-378
-
-
Marine, S.1
Bahl, A.2
Ferrer, M.3
Buehler, E.4
-
20
-
-
70449091786
-
Systematic RNA interference reveals that oncogenic KRAS-driven cancers require TBK1
-
Barbie, D. A.; Tamayo, P.; Boehm, J. S.; Kim, S. Y.; Moody, S. E.; Dunn, I. F.; Schinzel, A. C.; Sandy, P, Meylan, E.; Scholl, C.; Fröhling, S.; Chan, E. M.; Sos, M. L.; Michel, K.; Mermel, C.; Silver, S. J.; Weir, B. A.; Reiling, J. H.; Sheng, Q.; Gupta, PB.; Wadlow, R. C.; Le, H.; Hoersch, S.; Wittner, B. S.; Ramaswamy, S.; Livingston, D. M.; Sabatini, D. M.; Meyerson, M.; Thomas, R. K.; Lander, E. S.; Mesirov, J. P.; Root, D. E.; Gilliland, D. G.; Jacks, T.; Hahn, W. C. Systematic RNA interference reveals that oncogenic KRAS-driven cancers require TBK1. Nature, 2009, 461(7269), 108-112.
-
(2009)
Nature
, vol.461
, Issue.7269
, pp. 108-112
-
-
Barbie, D.A.1
Tamayo, P.2
Boehm, J.S.3
Kim, S.Y.4
Moody, S.E.5
Dunn, I.F.6
Schinzel, A.C.7
Sandy, P.M.E.8
Scholl, C.9
Fröhling, S.10
Chan, E.M.11
Sos, M.L.12
Michel, K.13
Mermel, C.14
Silver, S.J.15
Weir, B.A.16
Reiling, J.H.17
Sheng, Q.18
Gupta, P.B.19
Wadlow, R.C.20
Le, H.21
Hoersch, S.22
Wittner, B.S.23
Ramaswamy, S.24
Livingston, D.M.25
Sabatini, D.M.26
Meyerson, M.27
Thomas, R.K.28
Lander, E.S.29
Mesirov, J.P.30
Root, D.E.31
Gilliland, D.G.32
Jacks, T.33
Hahn, W.C.34
more..
-
21
-
-
79961062492
-
Systematic investigation of genetic vulnerabilities across cancer cell lines reveals lineage-specific dependencies in ovarian cancer
-
Cheung, H. W.; Cowley, G. S.; Weir, B. A.; Boehm, J. S.; Rusin, S.; Scott, J. A.; East, A.; Ali, L. D.; Lizotte, P. H.; Wong, T. C.; Jiang, G.; Hsiao, J.; Mermel, C. H.; Getz, G.; Barretina, J.; Gopal, S.; Tamayo, P.; Gould, J.; Tsherniak, A.; Stransky, N.; Luo, B.; Ren, Y.; Drapkin, R.; Bhatia, S. N.; Mesirov, J. P.; Garraway, L. A.; Meyerson, M.; Lander, E. S.; Root, D. E.; Hahn, W. C. Systematic investigation of genetic vulnerabilities across cancer cell lines reveals lineage-specific dependencies in ovarian cancer. Proc. Natl. Acad. Sci. USA, 2011, 108(30), 12372-12377.
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.108
, Issue.30
, pp. 12372-12377
-
-
Cheung, H.W.1
Cowley, G.S.2
Weir, B.A.3
Boehm, J.S.4
Rusin, S.5
Scott, J.A.6
East, A.7
Ali, L.D.8
Lizotte, P.H.9
Wong, T.C.10
Jiang, G.11
Hsiao, J.12
Mermel, C.H.13
Getz, G.14
Barretina, J.15
Gopal, S.16
Tamayo, P.17
Gould, J.18
Tsherniak, A.19
Stransky, N.20
Luo, B.21
Ren, Y.22
Drapkin, R.23
Bhatia, S.N.24
Mesirov, J.P.25
Garraway, L.A.26
Meyerson, M.27
Lander, E.S.28
Root, D.E.29
Hahn, W.C.30
more..
-
22
-
-
0347755531
-
The UCSC table browser data retrieval tool
-
Karolchik, D.; Hinrichs, A. S.; Furey, T. S.; Roskin, K. M.; Sugnet, C. W.; Haussler, D.; Kent, W. J. The UCSC Table Browser data retrieval tool. Nucleic Acids Res., 2004, 32, D493-D496. (Pubitemid 38081706)
-
(2004)
Nucleic Acids Research
, vol.32
, Issue.DATABASE ISS.
-
-
Karolchik, D.1
Hinricks, A.S.2
Furey, T.S.3
Roskin, K.M.4
Sugnet, C.W.5
Haussler, D.6
Kent, W.J.7
-
23
-
-
78651293534
-
MiRBase: Integrating microRNA annotation and deep-sequencing data
-
Kozomara, A.; Griffiths-Jones, S. miRBase: integrating microRNA annotation and deep-sequencing data. Nucleic Acids Res., 2011, 39, D152-D157.
-
(2011)
Nucleic Acids Res.
, vol.39
-
-
Kozomara, A.1
Griffiths-Jones, S.2
-
24
-
-
84862176128
-
Tarbase 6.0: Capturing the exponential growth of miRNA targets with experimental support
-
Vergoulis, T.; Vlachos, I. S.; Alexiou, P.; Georgakilas, G.; Maragkakis, M.; Reczko, M.; Gerangelos, S.; Koziris, N.; Dalamagas, T.; Hatzigeorgiou, A. G. Tarbase 6.0: Capturing the Exponential Growth of miRNA Targets with Experimental Support. Nucleic Acids Res., 2012, 40, D222-229.
-
(2012)
Nucleic Acids Res.
, vol.40
-
-
Vergoulis, T.1
Vlachos, I.S.2
Alexiou, P.3
Georgakilas, G.4
Maragkakis, M.5
Reczko, M.6
Gerangelos, S.7
Koziris, N.8
Dalamagas, T.9
Hatzigeorgiou, A.G.10
-
25
-
-
80052890070
-
Off-target effects dominate a large-scale RNAi screen for modulators of the TGF-α pathway and reveal microRNA regulation of TGFBR2
-
Schultz, N.; Marenstein, D. R.; DeAngelis, D. A.; Wang, W. Q.; Nelander, S.; Jacobsen, A.; Marks, D. S.; Massagué, J.; Sander, C. Off-target effects dominate a large-scale RNAi screen for modulators of the TGF-α pathway and reveal microRNA regulation of TGFBR2. Silence, 2011, 2, 3.
-
(2011)
Silence
, vol.2
, pp. 3
-
-
Schultz, N.1
Marenstein, D.R.2
De Angelis, D.A.3
Wang, W.Q.4
Nelander, S.5
Jacobsen, A.6
Marks, D.S.7
Massagué, J.8
Sander, C.9
-
26
-
-
23344438420
-
SiRNA-mediated off-target gene silencing triggered by a 7 nt complementation
-
DOI 10.1093/nar/gki762
-
Lin, X.; Ruan, X.; Anderson, M. G.; McDowell, J. A.; Kroeger, P. E.; Fesik, S. W.; Shen, Y. siRNA-mediated off-target gene silencing triggered by a 7 nt complementation. Nucleic Acids Res., 2005, 33(14), 4527-4535. (Pubitemid 41222567)
-
(2005)
Nucleic Acids Research
, vol.33
, Issue.14
, pp. 4527-4535
-
-
Lin, X.1
Ruan, X.2
Anderson, M.G.3
McDowell, J.A.4
Kroeger, P.E.5
Fesik, S.W.6
Shen, Y.7
-
27
-
-
84856109474
-
A novel specific edge effect correction method for RNA interference screenings
-
Carralot, J. P.; Ogier, A.; Boese, A.; Genovesio, A.; Brodin, P.; Sommer, P.; Dorval, T. A novel specific edge effect correction method for RNA interference screenings. Bioinformatics, 2012, 28(2), 261-268.
-
(2012)
Bioinformatics
, vol.28
, Issue.2
, pp. 261-268
-
-
Carralot, J.P.1
Ogier, A.2
Boese, A.3
Genovesio, A.4
Brodin, P.5
Sommer, P.6
Dorval, T.7
-
29
-
-
77954621797
-
The use of factorial moments in the treatment of the hypergeometric distribution and in tests for regression
-
Gonin, H. T. The use of factorial moments in the treatment of the hypergeometric distribution and in tests for regression. Philosophical Mag., 1936, 7, 215-226.
-
(1936)
Philosophical Mag.
, vol.7
, pp. 215-226
-
-
Gonin, H.T.1
-
30
-
-
58049196842
-
Integrating and Annotating the Interactome using the MiMI plugin for Cytoscape
-
Gao, J.; Ade, A. S.; Tarcea, V. G.; Weymouth, T. E.; Mirel, B. R.; Jagadish, H. V.; States, D. J. Integrating and Annotating the Interactome using the MiMI plugin for Cytoscape. Bioinformatics, 2009, 25(1), 137-138.
-
(2009)
Bioinformatics
, vol.25
, Issue.1
, pp. 137-138
-
-
Gao, J.1
Ade, A.S.2
Tarcea, V.G.3
Weymouth, T.E.4
Mirel, B.R.5
Jagadish, H.V.6
States, D.J.7
-
31
-
-
2942552459
-
An automated method for finding molecular complexes in large protein interaction networks
-
Bader, G. D.; Hogue, C. W. An automated method for finding molecular complexes in large protein interaction networks. BMC Bioinformatics, 2003, 4, 2.
-
(2003)
BMC Bioinformatics
, vol.4
, pp. 2
-
-
Bader, G.D.1
Hogue, C.W.2
-
32
-
-
24044440971
-
BiNGO: A Cytoscape plugin to assess overrepresentation of Gene Ontology categories in Biological Networks
-
DOI 10.1093/bioinformatics/bti551
-
Maere, S.; Heymans, K.; Kuiper, M. BiNGO: a Cytoscape plugin to assess overrepresentation of gene ontology categories in biological networks. Bioinformatics, 2005, 21(16), 3448-3449. (Pubitemid 41222459)
-
(2005)
Bioinformatics
, vol.21
, Issue.16
, pp. 3448-3449
-
-
Maere, S.1
Heymans, K.2
Kuiper, M.3
-
33
-
-
61449172037
-
Systematic and integrative analysis of large gene lists using DAVID Bioinformatics Resources
-
Huang, D. W.; Sherman, B. T.; Lempicki, R. A. Systematic and integrative analysis of large gene lists using DAVID Bioinformatics Resources. Nature Protoc., 2009, 4(1), 44-57.
-
(2009)
Nature Protoc.
, vol.4
, Issue.1
, pp. 44-57
-
-
Huang, D.W.1
Sherman, B.T.2
Lempicki, R.A.3
-
34
-
-
0037249501
-
PANTHER: A browsable database of gene products organized by biological function, using curated protein family and subfamily classification
-
DOI 10.1093/nar/gkg115
-
Thomas, P. D.; Kejariwal, A.; Campbell, M. J.; Mi, H.; Diemer, K.; Guo, N.; Ladunga, I.; Ulitsky-Lazareva, B.; Muruganujan, A.; Rabkin, S.; Vandergriff, J. A.; Doremieux, O. PANTHER: a browsable database of gene products organized by biological function, using curated protein family and subfamily classification. Nucleic Acids Res., 2003, 31(1), 334-341. (Pubitemid 36150398)
-
(2003)
Nucleic Acids Research
, vol.31
, Issue.1
, pp. 334-341
-
-
Thomas, P.D.1
Kejariwal, A.2
Campbell, M.J.3
Mi, H.4
Diemer, K.5
Guo, N.6
Ladunga, I.7
Ulitsky-Lazareva, B.8
Muruganujan, A.9
Rabkin, S.10
Vandergriff, J.A.11
Doremieux, O.12
-
35
-
-
79955692689
-
EGFR and EphA2 are host factors for hepatitis C virus entry and possible targets for antiviral therapy
-
Lupberger, J.; Zeisel, M. B.; Xiao, F.; Thumann, C.; Fofana, I.; Zona, L.; Davis, C.; Mee, C. J.; Turek, M.; Gorke, S.; Royer, C.; Fischer, B.; Zahid, M. N.; Lavillette, D.; Fresquet, J.; Cosset, F. L.; Rothenberg, S. M.; Pietschmann, T.; Patel, A. H.; Pessaux, P.; Doffoël, M.; Raffelsberger, W.; Poch, O.; McKeating, J. A.; Brino, L.; Baumert, T. F. EGFR and EphA2 are host factors for hepatitis C virus entry and possible targets for antiviral therapy. Nat. Med., 2011, 17(5), 589-595.
-
(2011)
Nat. Med.
, vol.17
, Issue.5
, pp. 589-595
-
-
Lupberger, J.1
Zeisel, M.B.2
Xiao, F.3
Thumann, C.4
Fofana, I.5
Zona, L.6
Davis, C.7
Mee, C.J.8
Turek, M.9
Gorke, S.10
Royer, C.11
Fischer, B.12
Zahid, M.N.13
Lavillette, D.14
Fresquet, J.15
Cosset, F.L.16
Rothenberg, S.M.17
Pietschmann, T.18
Patel, A.H.19
Pessaux, P.20
Doffoël, M.21
Raffelsberger, W.22
Poch, O.23
McKeating, J.A.24
Brino, L.25
Baumert, T.F.26
more..
-
36
-
-
33846846261
-
Survivin depletion preferentially reduces the survival of activated K-Ras-transformed cells
-
DOI 10.1158/1535-7163.MCT-06-0560
-
Sarthy, A. V.; Morgan-Lappe, S. E.; Zakula, D.; Vernetti, L.; Schurdak, M.; Packer, J. C.; Anderson, M. G.; Shirasawa, S.; Sasazuki, T.; Fesik, S. W. Survivin depletion preferentially reduces the survival of activated K-RAS-transformed cells. Mol. Cancer Ther., 2007, 6(1), 269-276. (Pubitemid 46206691)
-
(2007)
Molecular Cancer Therapeutics
, vol.6
, Issue.1
, pp. 269-276
-
-
Sarthy, A.V.1
Morgan-Lappe, S.E.2
Zakula, D.3
Vernetti, L.4
Schurdak, M.5
Packer, J.C.L.6
Anderson, M.G.7
Shirasawa, S.8
Sasazuki, T.9
Fesik, S.W.10
-
37
-
-
79960185923
-
Dicer recognizes the 5' end of RNA for efficient and accurate processing
-
Park, J. E.; Heo, I.; Tian, Y.; Simanshu, D. K.; Chang, H.; Jee, D.; Patel, D. J.; Kim, V. N. Dicer recognizes the 5' end of RNA for efficient and accurate processing. Nature, 2011, 475(7355), 201-205.
-
(2011)
Nature
, vol.475
, Issue.7355
, pp. 201-205
-
-
Park, J.E.1
Heo, I.2
Tian, Y.3
Simanshu, D.K.4
Chang, H.5
Jee, D.6
Patel, D.J.7
Kim, V.N.8
-
38
-
-
17844363243
-
The contributions of dsRNA structure to Dicer specificity and efficiency
-
DOI 10.1261/rna.7272305
-
Vermeulen, A.; Behlen, L.; Reynolds, A.; Wolfson, A.; Marshall, W. S.; Karpilow, J.; Khvorova, A. The contributions of dsRNA structure to Dicer specificity and efficiency. RNA, 2005, 11(5), 674-682. (Pubitemid 40594334)
-
(2005)
RNA
, vol.11
, Issue.5
, pp. 674-682
-
-
Vermeulen, A.1
Behlen, L.2
Reynolds, A.3
Wolfson, A.4
Marshall, W.S.5
Karpilow, J.6
Khvorova, A.7
-
39
-
-
54749113690
-
Inhibition and radiosensitization of glioblastoma and lung cancer cells by siRNA silencing of tumor necrosis factor receptor-associated factor 2
-
Zheng, M.; Morgan-Lappe, S. E.; Yang, J.; Bockbrader, K. M.; Pamarthy, D.; Thomas, D.; Fesik, S. W.; Sun, Y. Inhibition and radiosensitization of glioblastoma and lung cancer cells by siRNA silencing of tumor necrosis factor receptor-associated factor 2. Cancer Res., 2009, 68(18), 7570-7578.
-
(2009)
Cancer Res.
, vol.68
, Issue.18
, pp. 7570-7578
-
-
Zheng, M.1
Morgan-Lappe, S.E.2
Yang, J.3
Bockbrader, K.M.4
Pamarthy, D.5
Thomas, D.6
Fesik, S.W.7
Sun, Y.8
-
40
-
-
79952775174
-
RNAi screen of the protein kinome identifies checkpoint kinase 1 (CHK1) as a therapeutic target in neuroblastoma
-
Cole, K. A.; Huggins, J.; Laquaglia, M.; Hulderman, C. E.; Russell, M. R.; Bosse, K.; Diskin, S. J.; Attiyeh, E. F.; Sennett, R.; Norris, G.; Laudenslager, M.; Wood, A. C.; Mayes, P. A.; Jagannathan, J.; Winter, C.; Mosse, Y. P.; Maris, J. M. RNAi screen of the protein kinome identifies checkpoint kinase 1 (CHK1) as a therapeutic target in neuroblastoma. Proc. Natl. Acad. Sci. USA, 2011, 108(8), 3336-3341.
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.108
, Issue.8
, pp. 3336-3341
-
-
Cole, K.A.1
Huggins, J.2
Laquaglia, M.3
Hulderman, C.E.4
Russell, M.R.5
Bosse, K.6
Diskin, S.J.7
Attiyeh, E.F.8
Sennett, R.9
Norris, G.10
Laudenslager, M.11
Wood, A.C.12
Mayes, P.A.13
Jagannathan, J.14
Winter, C.15
Mosse, Y.P.16
Maris, J.M.17
-
41
-
-
84864326893
-
Use and abuse of RNAi to study mammalian gene function
-
Kaelin, W. G. Jr. Use and Abuse of RNAi to Study Mammalian Gene Function. Science, 2012, 337(6093), 421-422.
-
(2012)
Science
, vol.337
, Issue.6093
, pp. 421-422
-
-
Kaelin Jr., W.G.1
|