-
1
-
-
18744361871
-
Enhancement of cellular memory by reducing stochastic transitions
-
Acar M, Becskei A, Van Oudenaarden A. 2005. Enhancement of cellular memory by reducing stochastic transitions. Nature 435:228-32
-
(2005)
Nature
, vol.435
, pp. 228-232
-
-
Acar, M.1
Becskei, A.2
Van Oudenaarden, A.3
-
2
-
-
41349119880
-
Stochastic switching as a survival strategy in fluctuating environments
-
Acar M, Mettetal JT, Van Oudenaarden A. 2008. Stochastic switching as a survival strategy in fluctuating environments. Nat. Genet. 40:471-75
-
(2008)
Nat. Genet.
, vol.40
, pp. 471-475
-
-
Acar, M.1
Mettetal, J.T.2
Van Oudenaarden, A.3
-
3
-
-
34249079154
-
Network motifs: Theory and experimental approaches
-
Alon U. 2007. Network motifs: theory and experimental approaches. Nat. Rev. Genet. 8:450-61
-
(2007)
Nat. Rev. Genet.
, vol.8
, pp. 450-461
-
-
Alon, U.1
-
4
-
-
0033037746
-
Responding to attraction: Chemotaxis and chemotropism in Dictyostelium and yeast
-
Arkowitz RA. 1999. Responding to attraction: chemotaxis and chemotropism in Dictyostelium and yeast. Trends Cell Biol. 9:20-27
-
(1999)
Trends Cell Biol.
, vol.9
, pp. 20-27
-
-
Arkowitz, R.A.1
-
5
-
-
33748852945
-
Discrimination learning and extinction in paramecia ( P. caudatum)
-
Armus HL, Montgomery AR, Gurney RL. 2006. Discrimination learning and extinction in paramecia (P. caudatum). Psychol. Rep. 98:705-11
-
(2006)
Psychol. Rep.
, vol.98
, pp. 705-711
-
-
Armus, H.L.1
Montgomery, A.R.2
Gurney, R.L.3
-
6
-
-
4644343922
-
Bacterial persistence as a phenotypic switch
-
Balaban NQ, Merrin J, Chait R, Kowalik L, Leibler S. 2004. Bacterial persistence as a phenotypic switch. Science 305:1622-25
-
(2004)
Science
, vol.305
, pp. 1622-1625
-
-
Balaban, N.Q.1
Merrin, J.2
Chait, R.3
Kowalik, L.4
Leibler, S.5
-
7
-
-
0002941018
-
Yeast stress response and fermentation efficiency: How to survive the making of wine-A review
-
Bauer FF, Pretorius IS. 2000. Yeast stress response and fermentation efficiency: how to survive the making of wine-a review. S. Afr. J. Enol. Vitic. 21:27-51
-
(2000)
S. Afr. J. Enol. Vitic.
, vol.21
, pp. 27-51
-
-
Bauer, F.F.1
Pretorius, I.S.2
-
8
-
-
70449101292
-
Experimental evolution of bet hedging
-
Beaumont HJE, Gallie J, Kost C, Ferguson GC, Rainey PB. 2009. Experimental evolution of bet hedging. Nature 462:90-93
-
(2009)
Nature
, vol.462
, pp. 90-93
-
-
Beaumont, H.J.E.1
Gallie, J.2
Kost, C.3
Ferguson, G.C.4
Rainey, P.B.5
-
9
-
-
21344470923
-
Circadian rhythms from multiple oscillators: Lessons from diverse organisms
-
Bell-Pedersen D, Cassone VM, Earnest DJ, Golden SS, Hardin PE, et al. 2005. Circadian rhythms from multiple oscillators: lessons from diverse organisms. Nat. Rev. Genet. 6:544-56
-
(2005)
Nat. Rev. Genet.
, vol.6
, pp. 544-556
-
-
Bell-Pedersen, D.1
Cassone, V.M.2
Earnest, D.J.3
Golden, S.S.4
Hardin, P.E.5
-
11
-
-
33846076717
-
Phenotypic heterogeneity can enhance rare-cell survival in stress-sensitive yeast populations
-
Bishop AL, Rab FA, Sumner ER, Avery SV. 2007. Phenotypic heterogeneity can enhance rare-cell survival in stress-sensitive yeast populations. Mol. Microbiol. 63:507-20
-
(2007)
Mol. Microbiol.
, vol.63
, pp. 507-520
-
-
Bishop, A.L.1
Rab, F.A.2
Sumner, E.R.3
Avery, S.V.4
-
12
-
-
33845616177
-
Phenotypic consequences of promotermediated transcriptional noise
-
BlakeWJ, Balzsi G, KohanskiMA, Isaacs FJ,Murphy KF, et al. 2006. Phenotypic consequences of promotermediated transcriptional noise. Mol. Cell 24:853-65
-
(2006)
Mol. Cell
, vol.24
, pp. 853-865
-
-
Blake, W.J.1
Balzsi, G.2
Kohanski, M.A.3
Isaacs, F.J.4
Murphy, K.F.5
-
13
-
-
0037474301
-
The genome-wide transcriptional responses of Saccharomyces cerevisiae grown on glucose in aerobic chemostat cultures limited for carbon, nitrogen, phosphorus, or sulfur
-
Boer VM, de Winde JH, Pronk JT, Piper MDW. 2003. The genome-wide transcriptional responses of Saccharomyces cerevisiae grown on glucose in aerobic chemostat cultures limited for carbon, nitrogen, phosphorus, or sulfur. J. Biol. Chem. 278:3265-74
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 3265-3274
-
-
Boer, V.M.1
De Winde, J.H.2
Pronk, J.T.3
Piper, M.D.W.4
-
14
-
-
0037609037
-
Flagellar phase variation in Salmonella enterica is mediated by a posttranscriptional control mechanism
-
Bonifield HR, Hughes KT. 2003. Flagellar phase variation in Salmonella enterica is mediated by a posttranscriptional control mechanism. J. Bacteriol. 185:3567-74
-
(2003)
J. Bacteriol.
, vol.185
, pp. 3567-3574
-
-
Bonifield, H.R.1
Hughes, K.T.2
-
15
-
-
0031887807
-
Maltose/maltodextrin system of Escherichia coli: Transport, metabolism, and regulation
-
Boos W, Shuman H. 1998. Maltose/maltodextrin system of Escherichia coli: transport, metabolism, and regulation. Microbiol. Mol. Biol. Rev. 62:204-29
-
(1998)
Microbiol. Mol. Biol. Rev.
, vol.62
, pp. 204-229
-
-
Boos, W.1
Shuman, H.2
-
16
-
-
59649085782
-
Topological signatures of species interactions in metabolic networks
-
Borenstein E, Feldman MW. 2009. Topological signatures of species interactions in metabolic networks. J. Comput. Biol. 16:191-200
-
(2009)
J. Comput. Biol.
, vol.16
, pp. 191-200
-
-
Borenstein, E.1
Feldman, M.W.2
-
18
-
-
0029037739
-
Protein molecules as computational elements in living cells
-
Bray D. 1995. Protein molecules as computational elements in living cells. Nature 376:307-12
-
(1995)
Nature
, vol.376
, pp. 307-312
-
-
Bray, D.1
-
19
-
-
34247341747
-
H2A.Z-mediated localization of genes at the nuclear periphery confers epigenetic memory of previous transcriptional state
-
Brickner DG, Cajigas I, Fondufe-Mittendorf Y, Ahmed S, Lee PC, et al. 2007. H2A.Z-mediated localization of genes at the nuclear periphery confers epigenetic memory of previous transcriptional state. PLoS Biol. 5:e81
-
(2007)
PLoS Biol.
, vol.5
-
-
Brickner, D.G.1
Cajigas, I.2
Fondufe-Mittendorf, Y.3
Ahmed, S.4
Lee, P.C.5
-
20
-
-
15744397041
-
Chromatin remodeling complexes: Strength in diversity, precision through specialization
-
Cairns BR. 2005. Chromatin remodeling complexes: strength in diversity, precision through specialization. Curr. Opin. Genet. Dev. 15:185-90
-
(2005)
Curr. Opin. Genet. Dev.
, vol.15
, pp. 185-190
-
-
Cairns, B.R.1
-
21
-
-
58049200682
-
Decomposition of complex microbial behaviors into resource-based stress responses
-
Carlson RP. 2009. Decomposition of complex microbial behaviors into resource-based stress responses. Bioinformatics 25:90-97
-
(2009)
Bioinformatics
, vol.25
, pp. 90-97
-
-
Carlson, R.P.1
-
22
-
-
0035149551
-
Remodeling of yeast genome expression in response to environmental changes
-
Causton HC, Ren B, Koh SS, Harbison CT, Kanin E, et al. 2001. Remodeling of yeast genome expression in response to environmental changes. Mol. Biol. Cell 12:323-37
-
(2001)
Mol. Biol. Cell
, vol.12
, pp. 323-337
-
-
Causton, H.C.1
Ren, B.2
Koh, S.S.3
Harbison, C.T.4
Kanin, E.5
-
23
-
-
0000344275
-
Inhibition by glucose of the induced synthesis of theβ-galactoside- enzyme system of Escherichia coli. Analysis of maintenance
-
Cohn M, Horibata K. 1959. Inhibition by glucose of the induced synthesis of theβ-galactoside-enzyme system of Escherichia coli. Analysis of maintenance. J. Bacteriol. 78:601-12
-
(1959)
J. Bacteriol.
, vol.78
, pp. 601-612
-
-
Cohn, M.1
Horibata, K.2
-
24
-
-
4344670936
-
Bow ties, metabolism and disease
-
Csete M, Doyle J. 2004. Bow ties, metabolism and disease. Trends Biotechnol. 22:446-50
-
(2004)
Trends Biotechnol.
, vol.22
, pp. 446-450
-
-
Csete, M.1
Doyle, J.2
-
25
-
-
23144432213
-
Optimality and evolutionary tuning of the expression level of a protein
-
Dekel E, Alon U. 2005. Optimality and evolutionary tuning of the expression level of a protein. Nature 436:588-92
-
(2005)
Nature
, vol.436
, pp. 588-592
-
-
Dekel, E.1
Alon, U.2
-
26
-
-
0029977826
-
Control of bacterial chemotaxis
-
Eisenbach M. 1996. Control of bacterial chemotaxis. Mol. Microbiol. 20:903-10
-
(1996)
Mol. Microbiol.
, vol.20
, pp. 903-910
-
-
Eisenbach, M.1
-
27
-
-
77956520011
-
Functional roles for noise in genetic circuits
-
Eldar A, Elowitz MB. 2010. Functional roles for noise in genetic circuits. Nature 467:167-73
-
(2010)
Nature
, vol.467
, pp. 167-173
-
-
Eldar, A.1
Elowitz, M.B.2
-
28
-
-
0033813390
-
Stress-controlled transcription factors, stress-induced genes and stress tolerance in budding yeast
-
Estruch F. 2000. Stress-controlled transcription factors, stress-induced genes and stress tolerance in budding yeast. FEMS Microbiol. Rev. 24:469-86
-
(2000)
FEMS Microbiol. Rev.
, vol.24
, pp. 469-486
-
-
Estruch, F.1
-
29
-
-
66849127702
-
Molecular circuits for associative learning in single-celled organisms
-
Fernando CT, Liekens AML, Bingle LEH, Beck C, Lenser T, et al. 2009. Molecular circuits for associative learning in single-celled organisms. J. R. Soc. Interface 6:463-69
-
(2009)
J. R. Soc. Interface
, vol.6
, pp. 463-469
-
-
Fernando, C.T.1
Liekens, A.M.L.2
Bingle, L.E.H.3
Beck, C.4
Lenser, T.5
-
30
-
-
0036532226
-
Self-perpetuating states in signal transduction: Positive feedback, double-negative feedback and bistability
-
Ferrell JE. 2002. Self-perpetuating states in signal transduction: positive feedback, double-negative feedback and bistability. Curr. Opin. Cell Biol. 14:140-48
-
(2002)
Curr. Opin. Cell Biol.
, vol.14
, pp. 140-148
-
-
Ferrell, J.E.1
-
31
-
-
62449123034
-
A chance at survival: Gene expression noise and phenotypic diversification strategies
-
Fraser D, KaernM. 2009. A chance at survival: gene expression noise and phenotypic diversification strategies. Mol. Microbiol. 71:1333-40
-
(2009)
Mol. Microbiol.
, vol.71
, pp. 1333-1340
-
-
Fraser, D.1
Kaern, M.2
-
33
-
-
0033637153
-
Genomic expression programs in the response of yeast cells to environmental changes
-
Gasch AP, Spellman PT, Kao CM, Carmel-Harel O, Eisen MB, et al. 2000. Genomic expression programs in the response of yeast cells to environmental changes. Mol. Biol. Cell 11:4241-57
-
(2000)
Mol. Biol. Cell
, vol.11
, pp. 4241-4257
-
-
Gasch, A.P.1
Spellman, P.T.2
Kao, C.M.3
Carmel-Harel, O.4
Eisen, M.B.5
-
34
-
-
0037173615
-
Functional profiling of the Saccharomyces cerevisiae genome
-
Giaever G, Chu AM, Ni L, Connelly C, Riles L, et al. 2002. Functional profiling of the Saccharomyces cerevisiae genome . Nature 418:387-91
-
(2002)
Nature
, vol.418
, pp. 387-391
-
-
Giaever, G.1
Chu, A.M.2
Ni, L.3
Connelly, C.4
Riles, L.5
-
35
-
-
70849086418
-
Epigenetic learning in non-neural organisms
-
Ginsburg S, Jablonka E. 2009. Epigenetic learning in non-neural organisms. J. Biosci. 34:633-46
-
(2009)
J. Biosci.
, vol.34
, pp. 633-646
-
-
Ginsburg, S.1
Jablonka, E.2
-
36
-
-
1842456940
-
Cyanobacterial circadian clocks-timing is everything
-
Golden SS, Canales SR. 2003. Cyanobacterial circadian clocks-timing is everything. Nat. Rev. Microbiol. 1:191-99
-
(2003)
Nat. Rev. Microbiol.
, vol.1
, pp. 191-199
-
-
Golden, S.S.1
Canales, S.R.2
-
38
-
-
77249122579
-
Prions, protein homeostasis, and phenotypic diversity
-
Halfmann R, Alberti S, Lindquist S. 2010. Prions, protein homeostasis, and phenotypic diversity. Trends Cell Biol. 20:125-33
-
(2010)
Trends Cell Biol.
, vol.20
, pp. 125-133
-
-
Halfmann, R.1
Alberti, S.2
Lindquist, S.3
-
40
-
-
0030463296
-
Flux analysis and control of the centralmetabolic pathways in Escherichia coli
-
HolmsH. 1996. Flux analysis and control of the centralmetabolic pathways in Escherichia coli. FEMS Microbiol. Rev. 19:85-116
-
(1996)
FEMS Microbiol. Rev.
, vol.19
, pp. 85-116
-
-
Holms, H.1
-
41
-
-
14244270260
-
Analysis of gene expression in Escherichia coli in response to changes of growth-limiting nutrient in chemostat cultures
-
HuaQ, YangC, OshimaT,MoriH, Shimizu K. 2004. Analysis of gene expression in Escherichia coli in response to changes of growth-limiting nutrient in chemostat cultures. Appl. Environ. Microbiol. 70:2354-66
-
(2004)
Appl. Environ. Microbiol.
, vol.70
, pp. 2354-2366
-
-
Hua, Q.1
Yang, C.2
Oshima, T.3
Mori, H.4
Shimizu, K.5
-
42
-
-
69549101750
-
Cyanobacterial daily life with Kai-based circadian and diurnal genome-wide transcriptional control in Synechococcus elongatus
-
ItoH,Mutsuda M, Murayama Y, Tomita J, Hosokawa N, et al. 2009. Cyanobacterial daily life with Kai-based circadian and diurnal genome-wide transcriptional control in Synechococcus elongatus. Proc. Natl. Acad. Sci. USA 106:14168-73
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 14168-14173
-
-
Ito, H.1
Mutsuda, M.2
Murayama, Y.3
Tomita, J.4
Hosokawa, N.5
-
43
-
-
68049107038
-
Transgenerational epigenetic inheritance: Prevalence, mechanisms, and implications for the study of heredity and evolution
-
Jablonka E, RazG. 2009. Transgenerational epigenetic inheritance: prevalence, mechanisms, and implications for the study of heredity and evolution. Q. Rev. Biol. 84:131-76
-
(2009)
Q. Rev. Biol.
, vol.84
, pp. 131-176
-
-
Jablonka, E.1
Raz, G.2
-
44
-
-
54249116230
-
Genetic regulatory mechanisms in the synthesis of proteins
-
Jacob F, Monod J. 1961. Genetic regulatory mechanisms in the synthesis of proteins. J. Mol. Biol. 3:318-56
-
(1961)
J. Mol. Biol.
, vol.3
, pp. 318-356
-
-
Jacob, F.1
Monod, J.2
-
45
-
-
38049146129
-
Cost-benefit theory and optimal design of gene regulation functions
-
Kalisky T, Dekel E, Alon U. 2007. Cost-benefit theory and optimal design of gene regulation functions . Phys. Biol. 4:229-45
-
(2007)
Phys. Biol.
, vol.4
, pp. 229-245
-
-
Kalisky, T.1
Dekel, E.2
Alon, U.3
-
47
-
-
10044266575
-
Specialized persister cells and the mechanism of multidrug tolerance in Escherichia coli
-
Keren I, Shah D, Spoering A, Kaldalu N, Lewis K. 2004. Specialized persister cells and the mechanism of multidrug tolerance in Escherichia coli. J. Bacteriol. 186:8172-80
-
(2004)
J. Bacteriol.
, vol.186
, pp. 8172-8180
-
-
Keren, I.1
Shah, D.2
Spoering, A.3
Kaldalu, N.4
Lewis, K.5
-
48
-
-
79951683930
-
Yeast cells can access distinct quiescent states
-
Klosinska MM, Crutchfield CA, Bradley PH, Rabinowitz JD, Broach JR. 2011. Yeast cells can access distinct quiescent states. Genes Dev. 25:336-49
-
(2011)
Genes Dev.
, vol.25
, pp. 336-349
-
-
Klosinska, M.M.1
Crutchfield, C.A.2
Bradley, P.H.3
Rabinowitz, J.D.4
Broach, J.R.5
-
49
-
-
77953152860
-
Implementation of dynamic Bayesian decisionmaking by intracellular kinetics
-
Kobayashi TJ. 2010. Implementation of dynamic Bayesian decisionmaking by intracellular kinetics. Phys. Rev. Lett. 104:228104
-
(2010)
Phys. Rev. Lett.
, vol.104
, pp. 228104
-
-
Kobayashi, T.J.1
-
50
-
-
80052650460
-
Dynamics of intracellular information decoding
-
Kobayashi TJ, Kamimura A. 2011. Dynamics of intracellular information decoding. Phys. Biol. 8:055007
-
(2011)
Phys. Biol.
, vol.8
, pp. 055007
-
-
Kobayashi, T.J.1
Kamimura, A.2
-
51
-
-
0037155938
-
Special essay. The seven pillars of life
-
Koshland DE. 2002. Special essay. The seven pillars of life. Science 295:2215-16
-
(2002)
Science
, vol.295
, pp. 2215-2216
-
-
Koshland, D.E.1
-
52
-
-
34247279134
-
SWI/SNF is required for transcriptional memory at the yeast GAL gene cluster
-
Kundu S, Horn PJ, Peterson CL. 2007. SWI/SNF is required for transcriptional memory at the yeast GAL gene cluster. Genes Dev. 21:997-1004
-
(2007)
Genes Dev.
, vol.21
, pp. 997-1004
-
-
Kundu, S.1
Horn, P.J.2
Peterson, C.L.3
-
53
-
-
77951996046
-
Dominant role for signal transduction in the transcriptional memory of yeast GAL genes
-
Kundu S, Peterson CL. 2010. Dominant role for signal transduction in the transcriptional memory of yeast GAL genes. Mol. Cell. Biol. 30:2330-40
-
(2010)
Mol. Cell. Biol.
, vol.30
, pp. 2330-2340
-
-
Kundu, S.1
Peterson, C.L.2
-
54
-
-
25444489027
-
Phenotypic diversity, population growth, and information in fluctuating environments
-
Kussell E, Leibler S. 2005. Phenotypic diversity, population growth, and information in fluctuating environments. Science 309:2075-78
-
(2005)
Science
, vol.309
, pp. 2075-2078
-
-
Kussell, E.1
Leibler, S.2
-
55
-
-
8644277897
-
Circadian rhythms in microorganisms: New complexities
-
Lakin-Thomas PL, Brody S. 2004. Circadian rhythms in microorganisms: new complexities. Annu. Rev. Microbiol. 58:489-519
-
(2004)
Annu. Rev. Microbiol.
, vol.58
, pp. 489-519
-
-
Lakin-Thomas, P.L.1
Brody, S.2
-
56
-
-
77649203870
-
Food quality and the risk of light exposure affect patch-choice decisions in the slime mold Physarum polycephalum
-
Latty T, Beekman M. 2010. Food quality and the risk of light exposure affect patch-choice decisions in the slime mold Physarum polycephalum. Ecology 91:22-27
-
(2010)
Ecology
, vol.91
, pp. 22-27
-
-
Latty, T.1
Beekman, M.2
-
57
-
-
33847070442
-
The role of chromatin during transcription
-
Li B, Carey M,Workman JL. 2007. The role of chromatin during transcription. Cell 128:707-19
-
(2007)
Cell
, vol.128
, pp. 707-719
-
-
Li, B.1
Carey, M.2
Workman, J.L.3
-
58
-
-
34249850790
-
Noisy information processing through transcriptional regulation
-
Libby E, Perkins TJ, Swain PS. 2007. Noisy information processing through transcriptional regulation. Proc. Natl. Acad. Sci. USA 104:7151-56
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 7151-7156
-
-
Libby, E.1
Perkins, T.J.2
Swain, P.S.3
-
59
-
-
77956892318
-
The role of physiological heterogeneity inmicrobial population behavior
-
Lidstrom ME, KonopkaMC. 2010. The role of physiological heterogeneity inmicrobial population behavior. Nat. Chem. Biol. 6:705-12
-
(2010)
Nat. Chem. Biol.
, vol.6
, pp. 705-712
-
-
Lidstrom, M.E.1
Konopka, M.C.2
-
60
-
-
18144396807
-
Global transcriptional programs reveal a carbon source foraging strategy by Escherichia coli
-
Liu M, Durfee T, Cabrera JE, Zhao K, Jin DJ, Blattner FR. 2005. Global transcriptional programs reveal a carbon source foraging strategy by Escherichia coli. J. Biol. Chem. 280:15921-27
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 15921-15927
-
-
Liu, M.1
Durfee, T.2
Cabrera, J.E.3
Zhao, K.4
Jin, D.J.5
Blattner, F.R.6
-
61
-
-
0029042379
-
Circadian orchestration of gene expression in cyanobacteria
-
Liu Y, Tsinoremas NF, Johnson CH, Lebedeva NV, Golden SS, et al. 1995. Circadian orchestration of gene expression in cyanobacteria. Genes Dev. 9:1469-78
-
(1995)
Genes Dev.
, vol.9
, pp. 1469-1478
-
-
Liu, Y.1
Tsinoremas, N.F.2
Johnson, C.H.3
Lebedeva, N.V.4
Golden, S.S.5
-
62
-
-
64749116742
-
Using movies to analyse gene circuit dynamics in single cells
-
Locke JCW, Elowitz MB. 2009. Using movies to analyse gene circuit dynamics in single cells. Nat. Rev. Microbiol. 7:383-92
-
(2009)
Nat. Rev. Microbiol.
, vol.7
, pp. 383-392
-
-
Locke, J.C.W.1
Elowitz, M.B.2
-
63
-
-
0032243078
-
Time at the end of the millennium: The Neurospora clock
-
Loros JJ. 1998. Time at the end of the millennium: the Neurospora clock. Curr. Opin. Microbiol. 1:698-706
-
(1998)
Curr. Opin. Microbiol.
, vol.1
, pp. 698-706
-
-
Loros, J.J.1
-
64
-
-
18244373943
-
Transcriptome analysis of the progressive adaptation of Lactococcus lactis to carbon starvation
-
LoubiereERP,Cocaign-BousquetM. 2005. Transcriptome analysis of the progressive adaptation of Lactococcus lactis to carbon starvation. J. Bacteriol. 187:3589-92
-
(2005)
J. Bacteriol.
, vol.187
, pp. 3589-3592
-
-
Loubiere, E.R.P.1
Cocaign-Bousquet, M.2
-
65
-
-
0035189042
-
Roles of DNA adenine methylation in regulating bacterial gene expression and virulence
-
Low DA, Weyand NJ, Mahan MJ. 2001. Roles of DNA adenine methylation in regulating bacterial gene expression and virulence. Infect. Immun. 69:7197-204
-
(2001)
Infect. Immun.
, vol.69
, pp. 7197-7204
-
-
Low, D.A.1
Weyand, N.J.2
Mahan, M.J.3
-
66
-
-
0842288229
-
Signaling switches and bistability arising from multisite phosphorylation in protein kinase cascades
-
Markevich NI, Hoek JB, Kholodenko BN. 2004. Signaling switches and bistability arising from multisite phosphorylation in protein kinase cascades. J. Cell Biol. 164:353-59
-
(2004)
J. Cell Biol.
, vol.164
, pp. 353-359
-
-
Markevich, N.I.1
Hoek, J.B.2
Kholodenko, B.N.3
-
68
-
-
33645124345
-
Bayes theorem and its applications in animal behaviour
-
McNamara JM, Green RF, Olsson O. 2006. Bayes theorem and its applications in animal behaviour. Oikos 112:243-51
-
(2006)
Oikos
, vol.112
, pp. 243-251
-
-
McNamara, J.M.1
Green, R.F.2
Olsson, O.3
-
69
-
-
4644336023
-
Revealing the world of RNA interference
-
Mello CC, Conte D. 2004. Revealing the world of RNA interference. Nature 431:338-42
-
(2004)
Nature
, vol.431
, pp. 338-342
-
-
Mello, C.C.1
Conte, D.2
-
70
-
-
33646926758
-
Dynamic nucleosomes and gene transcription
-
Mellor J. 2006. Dynamic nucleosomes and gene transcription. Trends Genet. 22:320-29
-
(2006)
Trends Genet.
, vol.22
, pp. 320-329
-
-
Mellor, J.1
-
71
-
-
79961081499
-
DNA methylation regulates phenotype-dependent transcriptional activity in Candida albicans
-
Mishra PK, Baum M, Carbon J. 2011. DNA methylation regulates phenotype-dependent transcriptional activity in Candida albicans. Proc. Natl. Acad. Sci. USA 108:11965-70
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.108
, pp. 11965-11970
-
-
Mishra, P.K.1
Baum, M.2
Carbon, J.3
-
72
-
-
79955565307
-
A mathematical model for adaptive prediction of environmental changes by microorganisms
-
Mitchell A, Pilpel Y. 2011. A mathematical model for adaptive prediction of environmental changes by microorganisms. Proc. Natl. Acad. Sci. USA 108:7271-76
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.108
, pp. 7271-7276
-
-
Mitchell, A.1
Pilpel, Y.2
-
73
-
-
67650376275
-
Adaptive prediction of environmental changes by microorganisms
-
Mitchell A, Romano GH, Groisman B, Yona A, Dekel E, et al. 2009. Adaptive prediction of environmental changes by microorganisms. Nature 460:220-24
-
(2009)
Nature
, vol.460
, pp. 220-224
-
-
Mitchell, A.1
Romano, G.H.2
Groisman, B.3
Yona, A.4
Dekel, E.5
-
74
-
-
80052009948
-
Mechanisms for the inheritance of chromatin states
-
Moazed D. 2011. Mechanisms for the inheritance of chromatin states. Cell 146:510-18
-
(2011)
Cell
, vol.146
, pp. 510-518
-
-
Moazed, D.1
-
75
-
-
77649140924
-
Methylation of H3K4 is required for inheritance of active transcriptional states
-
Muramoto T, Muller I, Thomas G, Melvin A, Chubb JR. 2010. Methylation of H3K4 is required for inheritance of active transcriptional states. Curr. Biol. 20:397-406
-
(2010)
Curr. Biol.
, vol.20
, pp. 397-406
-
-
Muramoto, T.1
Muller, I.2
Thomas, G.3
Melvin, A.4
Chubb, J.R.5
-
76
-
-
0344022572
-
Targeted recruitment of Set1 histone methylase by elongating Pol II provides a localized mark and memory of recent transcriptional activity
-
Ng HH, Robert F, Young RA, Struhl K. 2003. Targeted recruitment of Set1 histone methylase by elongating Pol II provides a localized mark and memory of recent transcriptional activity. Mol. Cell 11:709-19
-
(2003)
Mol. Cell
, vol.11
, pp. 709-719
-
-
Ng, H.H.1
Robert, F.2
Young, R.A.3
Struhl, K.4
-
77
-
-
0001555399
-
Description of the chemostat
-
Novick A, Szilard L. 1950. Description of the chemostat. Science 112:715-16
-
(1950)
Science
, vol.112
, pp. 715-716
-
-
Novick, A.1
Szilard, L.2
-
78
-
-
0001389945
-
Enzyme induction as an all-or-none phenomenon
-
Novick A, Weiner M. 1957. Enzyme induction as an all-or-none phenomenon. Proc. Natl. Acad. Sci. USA 43:553-66
-
(1957)
Proc. Natl. Acad. Sci. USA
, vol.43
, pp. 553-566
-
-
Novick, A.1
Weiner, M.2
-
79
-
-
1442354192
-
Multistability in the lactose utilization network of Escherichia coli
-
Ozbudak EM, Thattai M, Lim HN, Shraiman BI, Van Oudenaarden A. 2004. Multistability in the lactose utilization network of Escherichia coli. Nature 427:737-40
-
(2004)
Nature
, vol.427
, pp. 737-740
-
-
Ozbudak, E.M.1
Thattai, M.2
Lim, H.N.3
Shraiman, B.I.4
Van Oudenaarden, A.5
-
80
-
-
37549018487
-
Environmental variability and modularity of bacterial metabolic networks
-
Parter M, KashtanN, AlonU. 2007. Environmental variability and modularity of bacterial metabolic networks. BMC Evol. Biol. 7:169
-
(2007)
BMC Evol. Biol.
, vol.7
, pp. 169
-
-
Parter, M.1
Kashtan, N.2
Alon, U.3
-
81
-
-
71449096836
-
Strategies for cellular decision-making
-
Perkins TJ, Swain PS. 2009. Strategies for cellular decision-making. Mol. Syst. Biol. 5:326
-
(2009)
Mol. Syst. Biol.
, vol.5
, pp. 326
-
-
Perkins, T.J.1
Swain, P.S.2
-
82
-
-
53549123008
-
Nature, nurture, or chance: Stochastic gene expression and its consequences
-
Raj A, Van Oudenaarden A. 2008. Nature, nurture, or chance: stochastic gene expression and its consequences. Cell 135:216-26
-
(2008)
Cell
, vol.135
, pp. 216-226
-
-
Raj, A.1
Van Oudenaarden, A.2
-
83
-
-
25444468618
-
Noise in gene expression: Origins, consequences, and control
-
Raser JM, O'Shea EK. 2005. Noise in gene expression: origins, consequences, and control. Science 309:2010-13
-
(2005)
Science
, vol.309
, pp. 2010-2013
-
-
Raser, J.M.1
O'shea, E.K.2
-
84
-
-
73949083506
-
Glucose promotes stress resistance in the fungal pathogen Candida albicans
-
Rodaki A, Bohovych IM, Enjalbert B, Young T, Odds FC, et al. 2009. Glucose promotes stress resistance in the fungal pathogen Candida albicans. Mol. Biol. Cell 20:4845-55
-
(2009)
Mol. Biol. Cell
, vol.20
, pp. 4845-4855
-
-
Rodaki, A.1
Bohovych, I.M.2
Enjalbert, B.3
Young, T.4
Odds, F.C.5
-
85
-
-
15544371346
-
Gene regulation at the single-cell level
-
Rosenfeld N, Young JW, Alon U, Swain PS, Elowitz MB. 2005. Gene regulation at the single-cell level. Science 307:1962-65
-
(2005)
Science
, vol.307
, pp. 1962-1965
-
-
Rosenfeld, N.1
Young, J.W.2
Alon, U.3
Swain, P.S.4
Elowitz, M.B.5
-
86
-
-
77955452979
-
Regulation of phenotypic variability by a threshold-based mechanism underlies bacterial persistence
-
Rotem E, Loinger A, Ronin I, Levin-Reisman I, Gabay C, et al. 2010. Regulation of phenotypic variability by a threshold-based mechanism underlies bacterial persistence. Proc. Natl. Acad. Sci. USA 107:12541-46
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 12541-12546
-
-
Rotem, E.1
Loinger, A.2
Ronin, I.3
Levin-Reisman, I.4
Gabay, C.5
-
87
-
-
0029395010
-
Stress signaling in yeast
-
Ruis H, Sch uller C. 1995. Stress signaling in yeast. BioEssays 17:959-65
-
(1995)
BioEssays
, vol.17
, pp. 959-965
-
-
Ruis, H.1
Sch Uller, C.2
-
89
-
-
4344685444
-
Nutritional homeostasis in batch and steady-state culture of yeast
-
Saldanha AJ, Brauer MJ, Botstein D. 2004. Nutritional homeostasis in batch and steady-state culture of yeast. Mol. Biol. Cell 15:4089-104
-
(2004)
Mol. Biol. Cell
, vol.15
, pp. 4089-4104
-
-
Saldanha, A.J.1
Brauer, M.J.2
Botstein, D.3
-
90
-
-
0020891851
-
Escherichia coli habitats, cell types, and molecular mechanisms of gene control
-
Savageau MA. 1983. Escherichia coli habitats, cell types, and molecular mechanisms of gene control. Am. Nat. 122:732-44
-
(1983)
Am. Nat.
, vol.122
, pp. 732-744
-
-
Savageau, M.A.1
-
91
-
-
0031927611
-
Demand theory of gene regulation. II. Quantitative application to the lactose and maltose operons of Escherichia coli
-
Savageau MA. 1998. Demand theory of gene regulation. II. Quantitative application to the lactose and maltose operons of Escherichia coli. Genetics 149:1677-91
-
(1998)
Genetics
, vol.149
, pp. 1677-1691
-
-
Savageau, M.A.1
-
92
-
-
0001140586
-
Dependency on medium and temperature of cell size and chemical composition during balanced growth of Salmonella typhimurium
-
Schaechter M, Maale O, Kjeldgaard NO. 1958. Dependency on medium and temperature of cell size and chemical composition during balanced growth of Salmonella typhimurium. J. Gen. Microbiol. 19:592-606
-
(1958)
J. Gen. Microbiol.
, vol.19
, pp. 592-606
-
-
Schaechter, M.1
Maale, O.2
Kjeldgaard, N.O.3
-
93
-
-
34848928442
-
Genes induced late in infection increase fitness of Vibrio cholerae after release into the environment
-
Schild S, Tamayo R, Nelson EJ, Qadri F, Calderwood SB, Camilli A. 2007. Genes induced late in infection increase fitness of Vibrio cholerae after release into the environment. Cell Host Microbe 2:264-77
-
(2007)
Cell Host Microbe
, vol.2
, pp. 264-277
-
-
Schild, S.1
Tamayo, R.2
Nelson, E.J.3
Qadri, F.4
Calderwood, S.B.5
Camilli, A.6
-
94
-
-
78449268845
-
Interdependence of cell growth and gene expression: Origins and consequences
-
Scott M, Gunderson CW, Mateescu EM, Zhang Z, Hwa T. 2010. Interdependence of cell growth and gene expression: origins and consequences. Science 330:1099-102
-
(2010)
Science
, vol.330
, pp. 1099-1102
-
-
Scott, M.1
Gunderson, C.W.2
Mateescu, E.M.3
Zhang, Z.4
Hwa, T.5
-
95
-
-
0001151494
-
What is bet-hedging?
-
ed. PH Harvey, L Partridge, pp. . Oxford, UK Oxford Univ. Press
-
Seger J, Brockmann HJ. 1987. What is bet-hedging? In Oxford Surveys in Evolutionary Biology, ed. PH Harvey, L Partridge, pp. 182-211. Oxford, UK: Oxford Univ. Press
-
(1987)
Oxford Surveys in Evolutionary Biology
, pp. 182-211
-
-
Seger, J.1
Brockmann, H.J.2
-
96
-
-
0024205970
-
A comparison of high frequency switching in the yeast Candida albicans and the slime mold Dictyostelium discoideum
-
Soll DR, Kraft B. 1988. A comparison of high frequency switching in the yeast Candida albicans and the slime mold Dictyostelium discoideum. Dev. Genet. 9:615-28
-
(1988)
Dev. Genet.
, vol.9
, pp. 615-628
-
-
Soll, D.R.1
Kraft, B.2
-
97
-
-
8244241160
-
Protoplasmic movement in slime mold plasmodia: The diffusion drag force hypothesis
-
Stewart PA, Stewart BT. 1959. Protoplasmic movement in slime mold plasmodia: the diffusion drag force hypothesis. Exp. Cell Res. 17:44-58
-
(1959)
Exp. Cell Res.
, vol.17
, pp. 44-58
-
-
Stewart, P.A.1
Stewart, B.T.2
-
98
-
-
0036790975
-
Intrinsic and extrinsic contributions to stochasticity in gene expression
-
Swain PS, Elowitz MB, Siggia ED. 2002. Intrinsic and extrinsic contributions to stochasticity in gene expression. Proc. Natl. Acad. Sci. USA 99:12795-800
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 12795-12800
-
-
Swain, P.S.1
Elowitz, M.B.2
Siggia, E.D.3
-
99
-
-
2942584862
-
Diversity in chemotaxis mechanisms among the bacteria and archaea
-
Szurmant H, OrdalGW. 2004. Diversity in chemotaxis mechanisms among the bacteria and archaea. Microbiol. Mol. Biol. Rev. 68:301-19
-
(2004)
Microbiol. Mol. Biol. Rev.
, vol.68
, pp. 301-319
-
-
Szurmant, H.1
Ordal, G.W.2
-
100
-
-
45549085296
-
Predictive behavior within microbial genetic networks
-
Tagkopoulos I, Liu YC, Tavazoie S. 2008. Predictive behavior within microbial genetic networks. Science 320:1313-17
-
(2008)
Science
, vol.320
, pp. 1313-1317
-
-
Tagkopoulos, I.1
Liu, Y.C.2
Tavazoie, S.3
-
101
-
-
50949119269
-
Regulatory control and the costs and benefits of biochemical noise
-
Tanase-Nicola S, ten Wolde PR. 2008. Regulatory control and the costs and benefits of biochemical noise. PLoS Comput. Biol. 4:e1000125
-
(2008)
PLoS Comput. Biol.
, vol.4
-
-
Tanase-Nicola, S.1
Ten Wolde, P.R.2
-
102
-
-
77955102352
-
Quantifying E. coli proteome and transcriptome with single-molecule sensitivity in single cells
-
Taniguchi Y, Choi PJ, Li GW, Chen H, Babu M, et al. 2010. Quantifying E. coli proteome and transcriptome with single-molecule sensitivity in single cells. Science 329:533-38
-
(2010)
Science
, vol.329
, pp. 533-538
-
-
Taniguchi, Y.1
Choi, P.J.2
Li, G.W.3
Chen, H.4
Babu, M.5
-
103
-
-
2942555282
-
Stochastic gene expression in fluctuating environments
-
Thattai M, Van Oudenaarden A. 2004. Stochastic gene expression in fluctuating environments. Genetics 167:523-30
-
(2004)
Genetics
, vol.167
, pp. 523-530
-
-
Thattai, M.1
Van Oudenaarden, A.2
-
104
-
-
0032077377
-
From specific gene regulation to genomic networks: A global analysis of transcriptional regulation in Escherichia coli
-
Thieffry D, Huerta AM, Prez-Rueda E, Collado-Vides J. 1998. From specific gene regulation to genomic networks: a global analysis of transcriptional regulation in Escherichia coli. BioEssays 20:433-40
-
(1998)
BioEssays
, vol.20
, pp. 433-440
-
-
Thieffry, D.1
Huerta, A.M.2
Prez-Rueda, E.3
Collado-Vides, J.4
-
105
-
-
74549187509
-
Promoter architecture and the evolvability of gene expression
-
Tirosh I, Barkai N, Verstrepen KJ. 2009. Promoter architecture and the evolvability of gene expression. J. Biol. 8:95
-
(2009)
J. Biol.
, vol.8
, pp. 95
-
-
Tirosh, I.1
Barkai, N.2
Verstrepen, K.J.3
-
106
-
-
20244376755
-
Comparative metagenomics of microbial communities
-
Tringe SG, Von Mering C, Kobayashi A, Salamov AA, Chen K, et al. 2005. Comparative metagenomics of microbial communities. Science 308:554-57
-
(2005)
Science
, vol.308
, pp. 554-557
-
-
Tringe, S.G.1
Von Mering, C.2
Kobayashi, A.3
Salamov, A.A.4
Chen, K.5
-
107
-
-
0034727077
-
A yeast prion provides a mechanism for genetic variation and phenotypic diversity
-
True HL, Lindquist SL. 2000. A yeast prion provides a mechanism for genetic variation and phenotypic diversity. Nature 407:477-83
-
(2000)
Nature
, vol.407
, pp. 477-483
-
-
True, H.L.1
Lindquist, S.L.2
-
110
-
-
26944502707
-
RNAi-directed assembly of heterochromatin in fission yeast
-
Verdel A, MoazedD. 2005. RNAi-directed assembly of heterochromatin in fission yeast. FEBS Lett. 579:5872-78
-
(2005)
FEBS Lett.
, vol.579
, pp. 5872-5878
-
-
Verdel, A.1
Moazed, D.2
-
111
-
-
45949091448
-
Memory in microbes: Quantifying history-dependent behavior in a bacterium
-
Wolf DM, Fonaine-Bodin L, Bischofs I, Price G, Keasling J, Arkin AP. 2008. Memory in microbes: quantifying history-dependent behavior in a bacterium. PloS ONE 3:e1700
-
(2008)
PloS ONE
, vol.3
-
-
Wolf, D.M.1
Fonaine-Bodin, L.2
Bischofs, I.3
Price, G.4
Keasling, J.5
Arkin, A.P.6
-
112
-
-
14744282987
-
Diversity in times of adversity: Probabilistic strategies in microbial survival games
-
Wolf DM, Vazirani VV, Arkin AP. 2005. Diversity in times of adversity: probabilistic strategies in microbial survival games. J. Theor. Biol. 234:227-53
-
(2005)
J. Theor. Biol.
, vol.234
, pp. 227-253
-
-
Wolf, D.M.1
Vazirani, V.V.2
Arkin, A.P.3
-
113
-
-
77953810073
-
Association analysis of the general environmental conditions and prokaryotes' gene distributions in various functional groups
-
Wu H, Moore E. 2010. Association analysis of the general environmental conditions and prokaryotes' gene distributions in various functional groups. Genomics 96:27-38
-
(2010)
Genomics
, vol.96
, pp. 27-38
-
-
Wu, H.1
Moore, E.2
-
114
-
-
0345359924
-
A positive-feedback-based bistable memory module that governs a cell fate decision
-
Xiong W, Ferrell JE. 2003. A positive-feedback-based bistable memory module that governs a cell fate decision. Nature 426:460-65
-
(2003)
Nature
, vol.426
, pp. 460-465
-
-
Xiong, W.1
Ferrell, J.E.2
-
115
-
-
36549089092
-
A yeast catabolic enzyme controls transcriptional memory
-
Zacharioudakis I, Gligoris T, Tzamarias D. 2007. A yeast catabolic enzyme controls transcriptional memory. Curr. Biol. 17:2041-46
-
(2007)
Curr. Biol.
, vol.17
, pp. 2041-2046
-
-
Zacharioudakis, I.1
Gligoris, T.2
Tzamarias, D.3
-
116
-
-
34547851781
-
Adaptation in bacterial flagellar and motility systems: From regulon members to foraging-like behavior
-
Zhao K, Liu M, Burgess RR. 2007. Adaptation in bacterial flagellar and motility systems: from regulon members to foraging-like behavior in E. coli. Nucleic Acids Res. 35:4441-52
-
(2007)
E. coli. Nucleic Acids Res
, vol.35
, pp. 4441-4452
-
-
Zhao, K.1
Liu, M.2
Burgess, R.R.3
-
117
-
-
80053411336
-
Recent transcription-induced histone H3 lysine 4 (H3K4) methylation inhibits gene reactivation
-
Zhou BO, Zhou JQ. 2011. Recent transcription-induced histone H3 lysine 4 (H3K4) methylation inhibits gene reactivation. J. Biol. Chem. 286:34770-76
-
(2011)
J. Biol. Chem.
, vol.286
, pp. 34770-34776
-
-
Zhou, B.O.1
Zhou, J.Q.2
-
118
-
-
0035103160
-
Analysis of expressed sequence tags from two starvation, time-of-day-specific libraries of Neurospora crassa reveals novel clock-controlled genes
-
Zhu H, Nowrousian M, Kupfer D, Colot HV, Berrocal-Tito G, et al. 2001. Analysis of expressed sequence tags from two starvation, time-of-day-specific libraries of Neurospora crassa reveals novel clock-controlled genes. Genetics 157:1057-65
-
(2001)
Genetics
, vol.157
, pp. 1057-1065
-
-
Zhu, H.1
Nowrousian, M.2
Kupfer, D.3
Colot, H.V.4
Berrocal-Tito, G.5
|