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Volumn 579, Issue 26, 2005, Pages 5872-5878

RNAi-directed assembly of heterochromatin in fission yeast

Author keywords

Clr4; Epigenetics; Heterochromatin; Histone methylation; RITS; RNAi; Transcriptional gene silencing

Indexed keywords

BINDING PROTEIN; DOUBLE STRANDED RNA; HISTONE H3; LYSINE; PROTEIN SWI;

EID: 26944502707     PISSN: 00145793     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.febslet.2005.08.083     Document Type: Short Survey
Times cited : (121)

References (54)
  • 1
    • 0032545933 scopus 로고    scopus 로고
    • Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans
    • A. Fire, S. Xu, M.K. Montgomery, S.A. Kostas, S.E. Driver, and C.C. Mello Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans Nature 391 1998 806 811
    • (1998) Nature , vol.391 , pp. 806-811
    • Fire, A.1    Xu, S.2    Montgomery, M.K.3    Kostas, S.A.4    Driver, S.E.5    Mello, C.C.6
  • 2
    • 4644336023 scopus 로고    scopus 로고
    • Revealing the world of RNA interference
    • C.C. Mello, and D. Conte Jr. Revealing the world of RNA interference Nature 431 2004 338 342
    • (2004) Nature , vol.431 , pp. 338-342
    • Mello, C.C.1    Conte Jr., D.2
  • 3
    • 4644242349 scopus 로고    scopus 로고
    • RNA silencing in plants
    • D. Baulcombe RNA silencing in plants Nature 431 2004 356 363
    • (2004) Nature , vol.431 , pp. 356-363
    • Baulcombe, D.1
  • 4
    • 0037123606 scopus 로고    scopus 로고
    • RNA silencing: The genome's immune system
    • R.H. Plasterk RNA silencing: the genome's immune system Science 296 2002 1263 1265
    • (2002) Science , vol.296 , pp. 1263-1265
    • Plasterk, R.H.1
  • 5
    • 0347444723 scopus 로고    scopus 로고
    • MicroRNAs: Genomics, biogenesis, mechanism, and function
    • D.P. Bartel MicroRNAs: genomics, biogenesis, mechanism, and function Cell 116 2004 281 297
    • (2004) Cell , vol.116 , pp. 281-297
    • Bartel, D.P.1
  • 6
    • 22144461002 scopus 로고    scopus 로고
    • MiRNAs, cancer, and stem cell division
    • C.M. Croce, and G.A. Calin miRNAs, cancer, and stem cell division Cell 122 2005 6 7
    • (2005) Cell , vol.122 , pp. 6-7
    • Croce, C.M.1    Calin, G.A.2
  • 7
    • 0035905766 scopus 로고    scopus 로고
    • Role for a bidentate ribonuclease in the initiation step of RNA interference
    • E. Bernstein, A.A. Caudy, S.M. Hammond, and G.J. Hannon Role for a bidentate ribonuclease in the initiation step of RNA interference Nature 409 2001 363 366
    • (2001) Nature , vol.409 , pp. 363-366
    • Bernstein, E.1    Caudy, A.A.2    Hammond, S.M.3    Hannon, G.J.4
  • 8
    • 3042767202 scopus 로고    scopus 로고
    • MicroRNAs: Small RNAs with a big role in gene regulation
    • L. He, and G.J. Hannon MicroRNAs: small RNAs with a big role in gene regulation Nat. Rev. Genet. 5 2004 522 531
    • (2004) Nat. Rev. Genet. , vol.5 , pp. 522-531
    • He, L.1    Hannon, G.J.2
  • 9
    • 0037062951 scopus 로고    scopus 로고
    • RNA interference
    • G.J. Hannon RNA interference Nature 418 2002 244 251
    • (2002) Nature , vol.418 , pp. 244-251
    • Hannon, G.J.1
  • 10
    • 10644237968 scopus 로고    scopus 로고
    • RNAi-mediated pathways in the nucleus
    • M.A. Matzke, and J.A. Birchler RNAi-mediated pathways in the nucleus Nat. Rev. Genet. 6 2005 24 35
    • (2005) Nat. Rev. Genet. , vol.6 , pp. 24-35
    • Matzke, M.A.1    Birchler, J.A.2
  • 11
    • 0042528729 scopus 로고    scopus 로고
    • Heterochromatin and epigenetic control of gene expression
    • S.I. Grewal, and D. Moazed Heterochromatin and epigenetic control of gene expression Science 301 2003 798 802
    • (2003) Science , vol.301 , pp. 798-802
    • Grewal, S.I.1    Moazed, D.2
  • 12
    • 4644312235 scopus 로고    scopus 로고
    • The role of RNA interference in heterochromatic silencing
    • Z. Lippman, and R. Martienssen The role of RNA interference in heterochromatic silencing Nature 431 2004 364 370
    • (2004) Nature , vol.431 , pp. 364-370
    • Lippman, Z.1    Martienssen, R.2
  • 15
    • 22144436236 scopus 로고    scopus 로고
    • The role of the RNAi machinery in heterochromatin formation
    • M. Wassenegger The role of the RNAi machinery in heterochromatin formation Cell 122 2005 13 16
    • (2005) Cell , vol.122 , pp. 13-16
    • Wassenegger, M.1
  • 16
    • 0037145031 scopus 로고    scopus 로고
    • Analysis of a piwi-related gene implicates small RNAs in genome rearrangement in tetrahymena
    • K. Mochizuki, N.A. Fine, T. Fujisawa, and M.A. Gorovsky Analysis of a piwi-related gene implicates small RNAs in genome rearrangement in tetrahymena Cell 110 2002 689 699
    • (2002) Cell , vol.110 , pp. 689-699
    • Mochizuki, K.1    Fine, N.A.2    Fujisawa, T.3    Gorovsky, M.A.4
  • 17
    • 23044437498 scopus 로고    scopus 로고
    • RNA meets chromatin
    • E. Bernstein, and C.D. Allis RNA meets chromatin Genes Dev. 19 2005 1635 1655
    • (2005) Genes Dev. , vol.19 , pp. 1635-1655
    • Bernstein, E.1    Allis, C.D.2
  • 18
    • 0037072661 scopus 로고    scopus 로고
    • Regulation of heterochromatic silencing and histone H3 lysine-9 methylation by RNAi
    • T.A. Volpe, C. Kidner, I.M. Hall, G. Teng, S.I. Grewal, and R.A. Martienssen Regulation of heterochromatic silencing and histone H3 lysine-9 methylation by RNAi Science 297 2002 1833 1837
    • (2002) Science , vol.297 , pp. 1833-1837
    • Volpe, T.A.1    Kidner, C.2    Hall, I.M.3    Teng, G.4    Grewal, S.I.5    Martienssen, R.A.6
  • 21
    • 10944248935 scopus 로고    scopus 로고
    • Two RNAi complexes, RITS and RDRC, physically interact and localize to noncoding centromeric RNAs
    • M.R. Motamedi, A. Verdel, S.U. Colmenares, S.A. Gerber, S.P. Gygi, and D. Moazed Two RNAi complexes, RITS and RDRC, physically interact and localize to noncoding centromeric RNAs Cell 119 2004 789 802
    • (2004) Cell , vol.119 , pp. 789-802
    • Motamedi, M.R.1    Verdel, A.2    Colmenares, S.U.3    Gerber, S.A.4    Gygi, S.P.5    Moazed, D.6
  • 22
    • 4644223259 scopus 로고    scopus 로고
    • Mechanisms of gene silencing by double-stranded RNA
    • G. Meister, and T. Tuschl Mechanisms of gene silencing by double-stranded RNA Nature 431 2004 343 349
    • (2004) Nature , vol.431 , pp. 343-349
    • Meister, G.1    Tuschl, T.2
  • 23
    • 4644350944 scopus 로고    scopus 로고
    • Unlocking the potential of the human genome with RNA interference
    • G.J. Hannon, and J.J. Rossi Unlocking the potential of the human genome with RNA interference Nature 431 2004 371 378
    • (2004) Nature , vol.431 , pp. 371-378
    • Hannon, G.J.1    Rossi, J.J.2
  • 24
    • 11844265935 scopus 로고    scopus 로고
    • RNA-dependent RNA polymerase is an essential component of a self-enforcing loop coupling heterochromatin assembly to siRNA production
    • T. Sugiyama, H. Cam, A. Verdel, D. Moazed, and S.I. Grewal RNA-dependent RNA polymerase is an essential component of a self-enforcing loop coupling heterochromatin assembly to siRNA production Proc. Natl. Acad. Sci. USA 102 2005 152 157
    • (2005) Proc. Natl. Acad. Sci. USA , vol.102 , pp. 152-157
    • Sugiyama, T.1    Cam, H.2    Verdel, A.3    Moazed, D.4    Grewal, S.I.5
  • 25
    • 0037072660 scopus 로고    scopus 로고
    • Small RNAs correspond to centromere heterochromatic repeats
    • B.J. Reinhart, and D.P. Bartel Small RNAs correspond to centromere heterochromatic repeats Science 297 2002 1831
    • (2002) Science , vol.297 , pp. 1831
    • Reinhart, B.J.1    Bartel, D.P.2
  • 26
    • 5644230790 scopus 로고    scopus 로고
    • Regulation of Swi6/HP1-dependent heterochromatin assembly by cooperation of components of the mitogen-activated protein kinase pathway and a histone deacetylase Clr6
    • H.S. Kim, E.S. Choi, J.A. Shin, Y.K. Jang, and S.D. Park Regulation of Swi6/HP1-dependent heterochromatin assembly by cooperation of components of the mitogen-activated protein kinase pathway and a histone deacetylase Clr6 J. Biol. Chem. 279 2004 42850 42859
    • (2004) J. Biol. Chem. , vol.279 , pp. 42850-42859
    • Kim, H.S.1    Choi, E.S.2    Shin, J.A.3    Jang, Y.K.4    Park, S.D.5
  • 27
    • 3042521583 scopus 로고    scopus 로고
    • RNAi-independent heterochromatin nucleation by the stress-activated ATF/CREB family proteins
    • S. Jia, K. Noma, and S.I. Grewal RNAi-independent heterochromatin nucleation by the stress-activated ATF/CREB family proteins Science 304 2004 1971 1976
    • (2004) Science , vol.304 , pp. 1971-1976
    • Jia, S.1    Noma, K.2    Grewal, S.I.3
  • 28
    • 0037422606 scopus 로고    scopus 로고
    • RNA interference machinery regulates chromosome dynamics during mitosis and meiosis in fission yeast
    • I.M. Hall, K. Noma, and S.I. Grewal RNA interference machinery regulates chromosome dynamics during mitosis and meiosis in fission yeast Proc. Natl. Acad. Sci. USA 100 2003 193 198
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 193-198
    • Hall, I.M.1    Noma, K.2    Grewal, S.I.3
  • 29
  • 30
    • 14844362869 scopus 로고    scopus 로고
    • RNA interference (RNAi)-dependent and RNAi-independent association of the Chp1 chromodomain protein with distinct heterochromatic loci in fission yeast
    • V.J. Petrie, J.D. Wuitschick, C.D. Givens, A.M. Kosinski, and J.F. Partridge RNA interference (RNAi)-dependent and RNAi-independent association of the Chp1 chromodomain protein with distinct heterochromatic loci in fission yeast Mol. Cell Biol. 25 2005 2331 2346
    • (2005) Mol. Cell Biol. , vol.25 , pp. 2331-2346
    • Petrie, V.J.1    Wuitschick, J.D.2    Givens, C.D.3    Kosinski, A.M.4    Partridge, J.F.5
  • 31
    • 23044498502 scopus 로고    scopus 로고
    • Comprehensive analysis of heterochromatin- and RNAi-mediated epigenetic control of the fission yeast genome
    • H. Cam, T. Sugiyama, E.S. Chen, X. Chen, P. Fitzgerald, and S.I. Grewal Comprehensive analysis of heterochromatin- and RNAi-mediated epigenetic control of the fission yeast genome Nat. Genet. 2005
    • (2005) Nat. Genet.
    • Cam, H.1    Sugiyama, T.2    Chen, E.S.3    Chen, X.4    Fitzgerald, P.5    Grewal, S.I.6
  • 32
    • 0037474126 scopus 로고    scopus 로고
    • ARGONAUTE4 control of locus-specific siRNA accumulation and DNA and histone methylation
    • D. Zilberman, X. Cao, and S.E. Jacobsen ARGONAUTE4 control of locus-specific siRNA accumulation and DNA and histone methylation Science 299 2003 716 719
    • (2003) Science , vol.299 , pp. 716-719
    • Zilberman, D.1    Cao, X.2    Jacobsen, S.E.3
  • 33
    • 0034596989 scopus 로고    scopus 로고
    • Transcriptional silencing and promoter methylation triggered by double-stranded RNA
    • M.F. Mette, W. Aufsatz, J. van der Winden, M.A. Matzke, and A.J. Matzke Transcriptional silencing and promoter methylation triggered by double-stranded RNA EMBO J. 19 2000 5194 5201
    • (2000) EMBO J. , vol.19 , pp. 5194-5201
    • Mette, M.F.1    Aufsatz, W.2    Van Der Winden, J.3    Matzke, M.A.4    Matzke, A.J.5
  • 34
    • 4344705410 scopus 로고    scopus 로고
    • Small Interfering RNA-induced transcriptional gene silencing in human cells
    • K.V. Morris, S.W. Chan, S.E. Jacobsen, and D.J. Looney Small Interfering RNA-induced transcriptional gene silencing in human cells Science 305 2004 1289 1292
    • (2004) Science , vol.305 , pp. 1289-1292
    • Morris, K.V.1    Chan, S.W.2    Jacobsen, S.E.3    Looney, D.J.4
  • 35
    • 4544242851 scopus 로고    scopus 로고
    • Induction of DNA methylation and gene silencing by short interfering RNAs in human cells
    • H. Kawasaki, and K. Taira Induction of DNA methylation and gene silencing by short interfering RNAs in human cells Nature 431 2004 211 217
    • (2004) Nature , vol.431 , pp. 211-217
    • Kawasaki, H.1    Taira, K.2
  • 36
    • 23044507007 scopus 로고    scopus 로고
    • Short double-stranded RNA induces transcriptional gene silencing in human cancer cells in the absence of DNA methylation
    • A.H. Ting, K.E. Schuebel, J.G. Herman, and S.B. Baylin Short double-stranded RNA induces transcriptional gene silencing in human cancer cells in the absence of DNA methylation Nat. Genet. 37 2005 906 910
    • (2005) Nat. Genet. , vol.37 , pp. 906-910
    • Ting, A.H.1    Schuebel, K.E.2    Herman, J.G.3    Baylin, S.B.4
  • 37
    • 4644300157 scopus 로고    scopus 로고
    • A single Argonaute protein mediates both transcriptional and posttranscriptional silencing in Schizosaccharomyces pombe
    • A. Sigova, N. Rhind, and P.D. Zamore A single Argonaute protein mediates both transcriptional and posttranscriptional silencing in Schizosaccharomyces pombe Genes Dev 18 2004 2359 2367
    • (2004) Genes Dev , vol.18 , pp. 2359-2367
    • Sigova, A.1    Rhind, N.2    Zamore, P.D.3
  • 38
    • 0034175605 scopus 로고    scopus 로고
    • Distinct protein interaction domains and protein spreading in a complex centromere
    • J.F. Partridge, B. Borgstrom, and R.C. Allshire Distinct protein interaction domains and protein spreading in a complex centromere Genes Dev 14 2000 783 791
    • (2000) Genes Dev , vol.14 , pp. 783-791
    • Partridge, J.F.1    Borgstrom, B.2    Allshire, R.C.3
  • 39
    • 0034046082 scopus 로고    scopus 로고
    • Four chromo-domain proteins of Schizosaccharomyces pombe differentially repress transcription at various chromosomal locations
    • G. Thon, and J. Verhein-Hansen Four chromo-domain proteins of Schizosaccharomyces pombe differentially repress transcription at various chromosomal locations Genetics 155 2000 551 568
    • (2000) Genetics , vol.155 , pp. 551-568
    • Thon, G.1    Verhein-Hansen, J.2
  • 40
    • 10644221797 scopus 로고    scopus 로고
    • RITS acts in cis to promote RNA interference-mediated transcriptional and post-transcriptional silencing
    • K. Noma, T. Sugiyama, H. Cam, A. Verdel, M. Zofall, S. Jia, D. Moazed, and S.I. Grewal RITS acts in cis to promote RNA interference-mediated transcriptional and post-transcriptional silencing Nat. Genet. 36 2004 1174 1180
    • (2004) Nat. Genet. , vol.36 , pp. 1174-1180
    • Noma, K.1    Sugiyama, T.2    Cam, H.3    Verdel, A.4    Zofall, M.5    Jia, S.6    Moazed, D.7    Grewal, S.I.8
  • 41
    • 26944450776 scopus 로고    scopus 로고
    • A Cullin E3 ubiquitin ligase complex associates with Rik1 and the Clr4 histone H3-K9 methyltransferase and is required for RNAi-mediated heterochromatin formation
    • (in press).
    • Hong, E.E., Villen, J., Gerace, E.L., Gygi, S.P. and Moazed, D. (2005) A Cullin E3 ubiquitin ligase complex associates with Rik1 and the Clr4 histone H3-K9 methyltransferase and is required for RNAi-mediated heterochromatin formation. RNA Biol. (in press).
    • (2005) RNA Biol.
    • Hong, E.E.1    Villen, J.2    Gerace, E.L.3    Gygi, S.P.4    Moazed, D.5
  • 42
    • 23944483515 scopus 로고    scopus 로고
    • Two novel proteins, dos1 and dos2, interact with rik1 to regulate heterochromatic RNA interference and histone modification
    • F. Li, D.B. Goto, M. Zaratiegui, X. Tang, R. Martienssen, and W.Z. Cande Two novel proteins, dos1 and dos2, interact with rik1 to regulate heterochromatic RNA interference and histone modification Curr. Biol. 15 2005 1448 1457
    • (2005) Curr. Biol. , vol.15 , pp. 1448-1457
    • Li, F.1    Goto, D.B.2    Zaratiegui, M.3    Tang, X.4    Martienssen, R.5    Cande, W.Z.6
  • 43
    • 0036927724 scopus 로고    scopus 로고
    • Cellular RNA-dependent RNA polymerase involved in posttranscriptional gene silencing has two distinct activity modes
    • E.V. Makeyev, and D.H. Bamford Cellular RNA-dependent RNA polymerase involved in posttranscriptional gene silencing has two distinct activity modes Mol. Cell 10 2002 1417 1427
    • (2002) Mol. Cell , vol.10 , pp. 1417-1427
    • Makeyev, E.V.1    Bamford, D.H.2
  • 44
    • 6344285337 scopus 로고    scopus 로고
    • A chromodomain protein, Chp1, is required for the establishment of heterochromatin in fission yeast
    • M. Sadaie, T. Iida, T. Urano, and J. Nakayama A chromodomain protein, Chp1, is required for the establishment of heterochromatin in fission yeast EMBO J. 23 2004 3825 3835
    • (2004) EMBO J. , vol.23 , pp. 3825-3835
    • Sadaie, M.1    Iida, T.2    Urano, T.3    Nakayama, J.4
  • 45
    • 0035815360 scopus 로고    scopus 로고
    • Role of histone H3 lysine 9 methylation in epigenetic control of heterochromatin assembly
    • J. Nakayama, J.C. Rice, B.D. Strahl, C.D. Allis, and S.I. Grewal Role of histone H3 lysine 9 methylation in epigenetic control of heterochromatin assembly Science 292 2001 110 113
    • (2001) Science , vol.292 , pp. 110-113
    • Nakayama, J.1    Rice, J.C.2    Strahl, B.D.3    Allis, C.D.4    Grewal, S.I.5
  • 46
    • 23044504238 scopus 로고    scopus 로고
    • A Rik1-associated, cullin-dependent E3 ubiquitin ligase is essential for heterochromatin formation
    • P.J. Horn, J.N. Bastie, and C.L. Peterson A Rik1-associated, cullin-dependent E3 ubiquitin ligase is essential for heterochromatin formation Genes Dev. 19 2005 1705 1714
    • (2005) Genes Dev. , vol.19 , pp. 1705-1714
    • Horn, P.J.1    Bastie, J.N.2    Peterson, C.L.3
  • 47
    • 0037509859 scopus 로고    scopus 로고
    • The ubiquitin ligase activity in the DDB2 and CSA complexes is differentially regulated by the COP9 signalosome in response to DNA damage
    • R. Groisman, J. Polanowska, I. Kuraoka, J. Sawada, M. Saijo, R. Drapkin, A.F. Kisselev, K. Tanaka, and Y. Nakatani The ubiquitin ligase activity in the DDB2 and CSA complexes is differentially regulated by the COP9 signalosome in response to DNA damage Cell 113 2003 357 367
    • (2003) Cell , vol.113 , pp. 357-367
    • Groisman, R.1    Polanowska, J.2    Kuraoka, I.3    Sawada, J.4    Saijo, M.5    Drapkin, R.6    Kisselev, A.F.7    Tanaka, K.8    Nakatani, Y.9
  • 49
  • 50
    • 0037041395 scopus 로고    scopus 로고
    • An extensive network of coupling among gene expression machines
    • T. Maniatis, and R. Reed An extensive network of coupling among gene expression machines Nature 416 2002 499 506
    • (2002) Nature , vol.416 , pp. 499-506
    • Maniatis, T.1    Reed, R.2
  • 51
    • 0038740693 scopus 로고    scopus 로고
    • Tails of intrigue: Phosphorylation of RNA polymerase II mediates histone methylation
    • M. Hampsey, and D. Reinberg Tails of intrigue: phosphorylation of RNA polymerase II mediates histone methylation Cell 113 2003 429 432
    • (2003) Cell , vol.113 , pp. 429-432
    • Hampsey, M.1    Reinberg, D.2
  • 52
    • 14844295120 scopus 로고    scopus 로고
    • RNA polymerase IV directs silencing of endogenous DNA
    • A.J. Herr, M.B. Jensen, T. Dalmay, and D.C. Baulcombe RNA polymerase IV directs silencing of endogenous DNA Science 308 2005 118 120
    • (2005) Science , vol.308 , pp. 118-120
    • Herr, A.J.1    Jensen, M.B.2    Dalmay, T.3    Baulcombe, D.C.4
  • 53
    • 25144439545 scopus 로고    scopus 로고
    • Analysis of double-stranded RNA and small RNAs involved in RNA-mediated transcriptional gene silencing
    • M.F. Mette, W. Aufsatz, T. Kanno, L. Daxinger, P. Rovina, M. Matzke, and A.J. Matzke Analysis of double-stranded RNA and small RNAs involved in RNA-mediated transcriptional gene silencing Methods Mol. Biol. 309 2005 61 82
    • (2005) Methods Mol. Biol. , vol.309 , pp. 61-82
    • Mette, M.F.1    Aufsatz, W.2    Kanno, T.3    Daxinger, L.4    Rovina, P.5    Matzke, M.6    Matzke, A.J.7
  • 54
    • 14844302397 scopus 로고    scopus 로고
    • Plant nuclear RNA polymerase IV mediates siRNA and DNA methylation-dependent heterochromatin formation
    • Y. Onodera, J.R. Haag, T. Ream, P.C. Nunes, O. Pontes, and C.S. Pikaard Plant nuclear RNA polymerase IV mediates siRNA and DNA methylation-dependent heterochromatin formation Cell 120 2005 613 622
    • (2005) Cell , vol.120 , pp. 613-622
    • Onodera, Y.1    Haag, J.R.2    Ream, T.3    Nunes, P.C.4    Pontes, O.5    Pikaard, C.S.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.