-
1
-
-
82955201613
-
Origin and diversifi cation of major clades in parmelioid lichens (Parmeliaceae, Ascomycota) during the Paleogene enferred by Bayesian analysis
-
AMO DE PAZ, G., P. CUBAS, P. K. DIVAKAR, H. T. LUMBSCH, AND A. CRESPO. 2011. Origin and diversifi cation of major clades in parmelioid lichens (Parmeliaceae, Ascomycota) during the Paleogene enferred by Bayesian analysis. PLoS ONE 6: e28161.
-
(2011)
PLoS ONE
, vol.6
-
-
Amo de Paz, G.1
Cubas, P.2
Divakar, P.K.3
Lumbsch, H.T.4
Crespo, A.5
-
2
-
-
34447127538
-
Parmelina quercina (Parmeliaceae, Lecanorales) includes four phylogenetically supported morphospecies
-
ARGÜELLO, A., R. DEL PRADO, P. CUBAS, AND A. CRESPO. 2007. Parmelina quercina (Parmeliaceae, Lecanorales) includes four phylogenetically supported morphospecies. Biological Journal of the Linnean Society 91: 455-467.
-
(2007)
Biological Journal of the Linnean Society
, vol.91
, pp. 455-467
-
-
Argüello, A.1
Del Prado, R.2
Cubas, P.3
Crespo, A.4
-
3
-
-
0002961523
-
Principles of genealogical concordance in species concepts and biological taxonomy
-
AVISE, J., AND R. BALL. 1990. Principles of genealogical concordance in species concepts and biological taxonomy. Oxford Surveys in Evolutionary Biology 7: 45-67.
-
(1990)
Oxford Surveys in Evolutionary Biology
, vol.7
, pp. 45-67
-
-
Avise, J.1
Ball, R.2
-
4
-
-
77955349439
-
Dating the molecular clock in fungi-How close are we?
-
BERBEE, M. L., AND J. W. TAYLOR. 2010. Dating the molecular clock in fungi-How close are we? Fungal Biology Reviews 24: 1-16.
-
(2010)
Fungal Biology Reviews
, vol.24
, pp. 1-16
-
-
Berbee, M.L.1
Taylor, J.W.2
-
5
-
-
78650445809
-
Recent trends in molecular phylogenetic analysis: Where to next?
-
BLAIR, C., AND R. W. MURPHY. 2011. Recent trends in molecular phylogenetic analysis: Where to next? Journal of Heredity 102: 130-138.
-
(2011)
Journal of Heredity
, vol.102
, pp. 130-138
-
-
Blair, C.1
Murphy, R.W.2
-
6
-
-
4944236506
-
A molecular phylogeny and a new classifi cation of parmelioid lichens containing Xanthoparmelia-type lichenan (Ascomycota: Lecanorales)
-
BLANCO, O., A. CRESPO, J. A. ELIX, D. L. HAWKSWORTH, AND H. T. LUMBSCH. 2004. A molecular phylogeny and a new classifi cation of parmelioid lichens containing Xanthoparmelia-type lichenan (Ascomycota: Lecanorales). Taxon 53: 959-975.
-
(2004)
Taxon
, vol.53
, pp. 959-975
-
-
Blanco, O.1
Crespo, A.2
Elix, J.A.3
Hawksworth, D.L.4
Lumbsch, H.T.5
-
7
-
-
33645010969
-
Major clades of parmelioid lichens (Parmeliaceae, Ascomycota) and the evolution of their morphological and chemical diversity
-
BLANCO, O., A. CRESPO, R. H. REE, AND H. T. LUMBSCH. 2006. Major clades of parmelioid lichens (Parmeliaceae, Ascomycota) and the evolution of their morphological and chemical diversity. Molecular Phylogenetics and Evolution 39: 52-69.
-
(2006)
Molecular Phylogenetics and Evolution
, vol.39
, pp. 52-69
-
-
Blanco, O.1
Crespo, A.2
Ree, R.H.3
Lumbsch, H.T.4
-
8
-
-
79959244921
-
Molecular phylogeny and systematics of Neotropical toucanets in the genus Aulacorhynchus (Aves, Ramphastidae)
-
BONACCORSO, E., J. M. GUAYASAMIN, A. T. PETERSON, AND A. G. NAVARROSIGÜENZA. 2011. Molecular phylogeny and systematics of Neotropical toucanets in the genus Aulacorhynchus (Aves, Ramphastidae). Zoologica Scripta 40: 336-349.
-
(2011)
Zoologica Scripta
, vol.40
, pp. 336-349
-
-
Bonaccorso, E.1
Guayasamin, J.M.2
Peterson, A.T.3
Navarrosigüenza, A.G.4
-
9
-
-
0000435664
-
Interpreting chemical variation in lichens for systematic purposes
-
BRODO, I. M. 1986. Interpreting chemical variation in lichens for systematic purposes. Bryologist 89: 132-138.
-
(1986)
Bryologist
, vol.89
, pp. 132-138
-
-
Brodo, I.M.1
-
10
-
-
41049092682
-
Strong mitochondrial DNA support for a Cretaceous origin of modern avian lineages
-
BROWN, J., J. REST, J. GARCÍA-MORENO, M. SORENSON, AND D. MINDELL. 2008. Strong mitochondrial DNA support for a Cretaceous origin of modern avian lineages. BMC Biology 6: 6.
-
(2008)
BMC Biology
, vol.6
, pp. 6
-
-
Brown, J.1
Rest, J.2
García-Moreno, J.3
Sorenson, M.4
Mindell, D.5
-
11
-
-
41149147684
-
Phylogeography across a continent: The evolutionary and demographic history of the North American racer (Serpentes: Colubridae: Coluber constrictor)
-
BURBRINK, F. T., F. FONTANELLA, R. A. PYRON, T. J. GUIHER, AND C. JIMENEZ. 2008. Phylogeography across a continent: The evolutionary and demographic history of the North American racer (Serpentes: Colubridae: Coluber constrictor). Molecular Phylogenetics and Evolution 47: 274-288.
-
(2008)
Molecular Phylogenetics and Evolution
, vol.47
, pp. 274-288
-
-
Burbrink, F.T.1
Fontanella, F.2
Pyron, R.A.3
Guiher, T.J.4
Jimenez, C.5
-
12
-
-
0032783828
-
The history of neotropical vegetation: New developments and status
-
BURNHAM, R. J., AND A. GRAHAM. 1999. The history of neotropical vegetation: New developments and status. Annals of the Missouri Botanical Garden 86: 546-589.
-
(1999)
Annals of the Missouri Botanical Garden
, vol.86
, pp. 546-589
-
-
Burnham, R.J.1
Graham, A.2
-
13
-
-
84869005512
-
Migration between continents: Geographical structure and long-distance gene fl ow in Porpidia fl avicunda (lichen-forming Ascomycota)
-
BUSCHBOM, J. 2007. Migration between continents: Geographical structure and long-distance gene fl ow in Porpidia fl avicunda (lichen-forming Ascomycota). Molecular Ecology 12: 957-968.
-
(2007)
Molecular Ecology
, vol.12
, pp. 957-968
-
-
Buschbom, J.1
-
14
-
-
84857258677
-
Accuracy and precision of species trees: Effects of locus, individual, and base-pair sampling on inference of species trees in lizards of the Liolaemus darwinii group (Squamata, Liolaemidae)
-
CAMARGO, A., L. J. AVILA, M. MORANDO, AND J. W. SITES. 2012. Accuracy and precision of species trees: Effects of locus, individual, and base-pair sampling on inference of species trees in lizards of the Liolaemus darwinii group (Squamata, Liolaemidae). Systematic Biology 61: 272-288.
-
(2012)
Systematic Biology
, vol.61
, pp. 272-288
-
-
Camargo, A.1
Avila, L.J.2
Morando, M.3
Sites, J.W.4
-
15
-
-
0001978128
-
-
University of Chicago Press, Chicago, Illinois, USA
-
COATES, A. G., AND J. A. OBANDO. 1996. The geological evolution of the Central American Isthmus. University of Chicago Press, Chicago, Illinois, USA.
-
(1996)
The geological evolution of the Central American Isthmus
-
-
Coates, A.G.1
Obando, J.A.2
-
16
-
-
85007337375
-
Phylogenetic generic classifi cation of parmelioid lichens (Parmeliaceae, Ascomycota) based on molecular, morphological and chemical evidence
-
CRESPO, A., F. KAUFF, P. K. DIVAKAR, R. DEL PRADO, S. PÉREZ-ORTEGA, G. AMO DE PAZ, Z. FERENCOVA, ET AL. 2010. Phylogenetic generic classifi cation of parmelioid lichens (Parmeliaceae, Ascomycota) based on molecular, morphological and chemical evidence. Taxon 59: 1735-1753.
-
(2010)
Taxon
, vol.59
, pp. 1735-1753
-
-
Crespo, A.1
Kauff, F.2
Divakar, P.K.3
del Prado, R.4
Pérez-Ortega, S.5
Amo de Paz, G.6
Ferencova, Z.7
-
17
-
-
80755183248
-
Cryptic species in lichen-forming fungi
-
CRESPO, A., AND H. T. LUMBSCH. 2010. Cryptic species in lichen-forming fungi. IMA Fungus 1: 167-170.
-
(2010)
IMA Fungus
, vol.1
, pp. 167-170
-
-
Crespo, A.1
Lumbsch, H.T.2
-
18
-
-
34447295941
-
Testing morphology-based hypotheses of phylogenetic relationships in Parmeliaceae (Ascomycota) using three ribosomal markers and the nuclear RPB1 gene
-
CRESPO, A., H. T. LUMBSCH, J.-E. MATTSSON, O. BLANCO, P. K. DIVAKAR, K. ARTICUS, E. WIKLUND, ET AL. 2007. Testing morphology-based hypotheses of phylogenetic relationships in Parmeliaceae (Ascomycota) using three ribosomal markers and the nuclear RPB1 gene. Molecular Phylogenetics and Evolution 44: 812-824.
-
(2007)
Molecular Phylogenetics and Evolution
, vol.44
, pp. 812-824
-
-
Crespo, A.1
Lumbsch, J.-E.2
Mattsson, H.T.3
Blanco, O.4
Divakar, P.K.5
Articus, K.6
Wiklund, E.7
-
19
-
-
0036660542
-
rDNA ITS and β-tubulin gene sequence analyses reveal two monophyletic groups within the cosmopolitan lichen
-
CRESPO, A., M. C. M OLINA, O. B LANCO, B. S CHROETER, L. G. SANCHO, AND D. L. HAWKSWORTH. 2002. rDNA ITS and β-tubulin gene sequence analyses reveal two monophyletic groups within the cosmopolitan lichen Parmelia saxatilis. Mycological Research 106: 788-795.
-
(2002)
Parmelia saxatilis. Mycological Research
, vol.106
, pp. 788-795
-
-
Crespo, A.1
Olina, M.C.M.2
Lanco, O.B.3
Chroeter, B.S.4
Sancho, L.G.5
Hawksworth, D.L.6
-
20
-
-
77953550760
-
Cryptic species and species pairs in lichens: A discussion on the relationship between molecular phylogenies and morphological characters
-
CRESPO, A., AND S. PÉREZ-ORTEGA. 2009. Cryptic species and species pairs in lichens: A discussion on the relationship between molecular phylogenies and morphological characters. Anales del Jardín Botánico de Madrid 66 (Supplement 1): 71-81.
-
(2009)
Anales del Jardín Botánico de Madrid
, vol.66
, Issue.SUPPL. 1
, pp. 71-81
-
-
Crespo, A.1
Pérez-Ortega, S.2
-
21
-
-
0000159059
-
The use of chemistry in the systematics of the lichens
-
CULBERSON, W. L. 1969. The use of chemistry in the systematics of the lichens. Taxon 18: 152-166.
-
(1969)
Taxon
, vol.18
, pp. 152-166
-
-
Culberson, W.L.1
-
22
-
-
34447548497
-
The arachiform vacuolar body: An overlooked shared character in the ascospores of a large monophyletic group within Parmeliaceae (Xanthoparmelia clade, Lecanorales)
-
DEL PRADO, R., Z. FERENCOVÁ, V. ARMAS-CRESPO, G. AMO DE PAZ, P. CUBAS, AND A. CRESPO. 2007. The arachiform vacuolar body: An overlooked shared character in the ascospores of a large monophyletic group within Parmeliaceae (Xanthoparmelia clade, Lecanorales). Mycological Research 111: 685-692.
-
(2007)
Mycological Research
, vol.111
, pp. 685-692
-
-
del Prado, R.1
Ferencová, Z.2
Armas-Crespo, V.3
Amo de Paz, G.4
Cubas, P.5
Crespo, A.6
-
23
-
-
77950538424
-
Phylogenetic assessment of alignments reveals neglected tree signal in gaps
-
DESSIMOZ, C., AND M. GIL. 2010. Phylogenetic assessment of alignments reveals neglected tree signal in gaps. Genome Biology 11: R37.
-
(2010)
Genome Biology
, vol.11
-
-
Dessimoz, C.1
Gil, M.2
-
24
-
-
0344863884
-
A multilocus genealogical approach to phylogenetic species recognition in the model eukaryote
-
DETTMAN, J., D. JACOBSON, AND J. TAYLOR. 2003. A multilocus genealogical approach to phylogenetic species recognition in the model eukaryote Neurospora. Evolution 57: 2703-2720.
-
(2003)
Neurospora. Evolution
, vol.57
, pp. 2703-2720
-
-
Dettman, J.1
Jacobson, D.2
Taylor, J.3
-
25
-
-
79955379190
-
Molecular phylogenetic studies reveal an undescribed species within the North American concept of Melanelixia glabra (Parmeliaceae)
-
DIVAKAR, P. K., G. FIGUERAS, N. HLADUN, AND A. C RESPO. 2 010a. M olecular phylogenetic studies reveal an undescribed species within the North American concept of Melanelixia glabra (Parmeliaceae). Fungal Diversity 42: 47-55.
-
(2010)
Fungal Diversity
, vol.42
, pp. 47-55
-
-
Divakar, P.K.1
Figueras, G.2
Hladun, N.3
Respo, A.C.4
-
26
-
-
77950144955
-
Remototrachyna, a newly recognized tropical lineage of lichens in the Hypotrachyna clade (Parmeliaceae, Ascomycota), originated in the Indian subcontinent
-
DIVAKAR, P. K., H. T. LUMBSCH, Z. FERENCOVA, R. DEL PRADO, AND A. CRESPO. 2010b. Remototrachyna, a newly recognized tropical lineage of lichens in the Hypotrachyna clade (Parmeliaceae, Ascomycota), originated in the Indian subcontinent. American Journal of Botany 97: 579-590.
-
(2010)
American Journal of Botany
, vol.97
, pp. 579-590
-
-
Divakar, P.K.1
Lumbsch, H.T.2
Ferencova, Z.3
del Prado, R.4
Crespo, A.5
-
27
-
-
13444302814
-
Parmelia barrenoae, a new lichen species related to Parmelia sulcata (Parmeliaceae) based on molecular and morphological data
-
DIVAKAR, P. K., M. C. MOLINA, H. T. LUMBSCH, AND A. CRESPO. 2005. Parmelia barrenoae, a new lichen species related to Parmelia sulcata (Parmeliaceae) based on molecular and morphological data. Lichenologist 37: 37-46.
-
(2005)
Lichenologist
, vol.37
, pp. 37-46
-
-
Divakar, P.K.1
Molina, M.C.2
Lumbsch, H.T.3
Crespo, A.4
-
28
-
-
84856472811
-
-
Website
-
DRUMMOND, A. J., B. ASHTON, S. BUXTON, M. CHEUNG, A. COOPER, J. HELED, ET AL. 2010. Geneious version 5.3 [computer program]. Website: http://www.geneious.com/
-
(2010)
Geneious version 5.3 [computer program]
-
-
Drummond, A.J.1
Ashton, B.2
Buxton, S.3
Cheung, M.4
Cooper, A.5
Heled, J.6
-
30
-
-
38649110663
-
BEAST: Bayesian evolutionary analysis by sampling trees
-
DRUMMOND, A., AND A. RAMBAUT. 2007. BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evolutionary Biology 7: 214.
-
(2007)
BMC Evolutionary Biology
, vol.7
, pp. 214
-
-
Drummond, A.1
Rambaut, A.2
-
31
-
-
70349334103
-
Phylogenetic inference under varying proportions of indel-induced alignment gaps
-
DWIVEDI, B., AND S. G ADAGKAR. 2 009. P hylogenetic inference under varying proportions of indel-induced alignment gaps. BMC Evolutionary Biology 9: 211.
-
(2009)
BMC Evolutionary Biology
, vol.9
, pp. 211
-
-
Dwivedi, B.1
Adagkar, S.G.2
-
32
-
-
0002101270
-
Correlations and non-correlations of chemical variation patterns with lichen morphology and geography
-
EGAN, R. S. 1986. Correlations and non-correlations of chemical variation patterns with lichen morphology and geography. Bryologist 89: 99-110.
-
(1986)
Bryologist
, vol.89
, pp. 99-110
-
-
Egan, R.S.1
-
33
-
-
77949774293
-
Triterpene chemosyndromes and subtle morphological characters characterise lineages in the Physcia aipolia group in Australia (Ascomycota)
-
ELIX, J. A., J. CORUSH, AND H. T. LUMBSCH. 2009. Triterpene chemosyndromes and subtle morphological characters characterise lineages in the Physcia aipolia group in Australia (Ascomycota). Systematics and Biodiversity 7: 479-487.
-
(2009)
Systematics and Biodiversity
, vol.7
, pp. 479-487
-
-
Elix, J.A.1
Corush, J.2
Lumbsch, H.T.3
-
34
-
-
0343274903
-
Systematics of Oropogon (Alectoriaceae) in the New World
-
ESSLINGER, T. L. 1989. Systematics of Oropogon (Alectoriaceae) in the New World. Systematic Botany Monographs 28: 1-111.
-
(1989)
Systematic Botany Monographs
, vol.28
, pp. 1-111
-
-
Esslinger, T.L.1
-
35
-
-
79952422779
-
Population structure of mycobionts and photobionts of the widespread lichen
-
FERNÁNDEZ-MENDOZA, F., S. DOMASCHKE, M. A. GARCÍA, P. JORDAN, M. P. MARTIN, AND C. PRINTZEN. 2011. Population structure of mycobionts and photobionts of the widespread lichen Cetraria aculeata. Molecular Ecology 20: 1208-1232.
-
(2011)
Cetraria aculeata. Molecular Ecology
, vol.20
, pp. 1208-1232
-
-
Fernández-Mendoza, F.1
Domaschke, S.2
García, M.A.3
Jordan, P.4
Martin, M.P.5
Printzen, C.6
-
36
-
-
84879885349
-
Space-time patterns of Cenozoic arc volcanism in central Mexico: From the Sierra Madre Occidental to the Mexican Volcanic Belt
-
FERRARI, L., M. LÓPEZ-MARTÍNEZ, G. AGUIRRE-DÍAZ, AND G. CARRASCONÚÑEZ. 1999. Space-time patterns of Cenozoic arc volcanism in central Mexico: From the Sierra Madre Occidental to the Mexican Volcanic Belt. Geology 27: 303-306.
-
(1999)
Geology
, vol.27
, pp. 303-306
-
-
Ferrari, L.1
López-Martínez, M.2
Aguirre-Díaz, G.3
Carrasconúñez, G.4
-
37
-
-
34447549144
-
-
Oxford University Press, Oxford, UK
-
FERRUSQUÍA-VILLAFRANCA, I., AND L. I. GONZÁLEZ-GUZMÁN. 2005. Northern Mexico's landscape, part II: The biotic setting across time. Oxford University Press, Oxford, UK.
-
(2005)
Northern Mexico's landscape, part II: The biotic setting across time
-
-
Ferrusquía-Villafranca, I.1
González-Guzmán, L.I.2
-
38
-
-
33846958749
-
Biodiversity of lichens, including a world-wide analysis of checklist data based on Takhtajan's fl oristic regions
-
FEUERER, T., AND D. HAWKSWORTH. 2007. Biodiversity of lichens, including a world-wide analysis of checklist data based on Takhtajan's fl oristic regions. Biodiversity and Conservation 16: 85-98.
-
(2007)
Biodiversity and Conservation
, vol.16
, pp. 85-98
-
-
Feuerer, T.1
Hawksworth, D.2
-
39
-
-
0003535672
-
-
CONAMBIO/ UNAM, Mexico, D.F., Mexico
-
FLORES-VILLELA, O., AND P. GEREZ. 1994. Biodiversidad y conservacíon en México: Vertebrados, vegetación y uso del suelo. CONAMBIO/ UNAM, Mexico, D.F., Mexico.
-
(1994)
Biodiversidad y conservacíon en México: Vertebrados, vegetación y uso del suelo
-
-
Flores-Villela, O.1
Gerez, P.2
-
40
-
-
84869036030
-
Miscellanea lichenologica. Flora-Morphology, distribution
-
FRIES, T. M. 1861. Miscellanea lichenologica. Flora-Morphology, distribution. Functional Ecology of Plants 44: 409-413.
-
(1861)
Functional Ecology of Plants
, vol.44
, pp. 409-413
-
-
Fries, T.M.1
-
41
-
-
42149128254
-
-
[EDS.]., Fondo Oaxaqueño para la Conservación de la Naturaleza-World Wildlife Fund, Oaxaca, Mexico
-
GARCÍA-MENDOZA, A. J., M. J. ORDÓÑEZ, AND M. BRIONES-SALAS [EDS.]. 2004. Biodiversidad de Oaxaca. Fondo Oaxaqueño para la Conservación de la Naturaleza-World Wildlife Fund, Oaxaca, Mexico.
-
(2004)
Biodiversidad de Oaxaca
-
-
García-Mendoza, A.J.1
Ordóñez, M.J.2
Briones-Salas, M.3
-
42
-
-
0027580147
-
ITS primers with enhanced specifi city for basidiomycetes-Application to the identifi cation of mycorrhizae and rusts
-
GARDES, M., AND T. D. BRUNS. 1993. ITS primers with enhanced specifi city for basidiomycetes-Application to the identifi cation of mycorrhizae and rusts. Molecular Ecology Notes 2: 113-118.
-
(1993)
Molecular Ecology Notes
, vol.2
, pp. 113-118
-
-
Gardes, M.1
Bruns, T.D.2
-
43
-
-
77954754513
-
Surviving climate changes: High genetic diversity and transoceanic gene fl ow in two arctic-alpine lichens, Flavocetraria cucullata and F. nivalis (Parmeliaceae, Ascomycota)
-
GEML, J., F. KAUFF, C. BROCHMANN, AND D. L. TAYLOR. 2010. Surviving climate changes: High genetic diversity and transoceanic gene fl ow in two arctic-alpine lichens, Flavocetraria cucullata and F. nivalis (Parmeliaceae, Ascomycota). Journal of Biogeography 37: 1529-1542.
-
(2010)
Journal of Biogeography
, vol.37
, pp. 1529-1542
-
-
Geml, J.1
Kauff, F.2
Brochmann, C.3
Taylor, D.L.4
-
44
-
-
84879890201
-
Uplift history of the Central and Northern Andes: A review
-
GREGORY-WODZICKI, K. M. 2000. Uplift history of the Central and Northern Andes: A review. Geological Society of America Bulletin 112: 1091-1105.
-
(2000)
Geological Society of America Bulletin
, vol.112
, pp. 1091-1105
-
-
Gregory-Wodzicki, K.M.1
-
45
-
-
0037054221
-
A late Miocene subtropical-dry fl ora from the northern Altiplano, Bolivia
-
GREGORY-WODZICKI, K. M. 2002. A late Miocene subtropical-dry fl ora from the northern Altiplano, Bolivia. Palaeogeography, Palaeoclimatology, Palaeoecology 180: 331-348.
-
(2002)
Palaeogeography, Palaeoclimatology, Palaeoecology
, vol.180
, pp. 331-348
-
-
Gregory-Wodzicki, K.M.1
-
46
-
-
84860421454
-
Discovery of cryptic species among North American pine-feeding Chionaspis scale insects (Hemiptera: Diaspididae)
-
GWIAZDOWSKI, R. A., I. M. VEA, J. C. ANDERSEN, AND B. B. NORMARK. 2011. Discovery of cryptic species among North American pine-feeding Chionaspis scale insects (Hemiptera: Diaspididae). Biological Journal of the Linnean Society. Linnean Society of London 104: 47-62.
-
(2011)
Biological Journal of the Linnean Society. Linnean Society of London
, vol.104
, pp. 47-62
-
-
Gwiazdowski, R.A.1
Vea, I.M.2
Andersen, J.C.3
Normark, B.B.4
-
47
-
-
0000077674
-
Lichen chemotaxonomy
-
In R. H. Bailey [ed.], Academic Press, London, UK
-
HAWKSWORTH, D. L. 1976. Lichen chemotaxonomy. In R. H. Bailey [ed.], Lichenology: Progress and problems, 139-184. Academic Press, London, UK.
-
(1976)
Lichenology: Progress and problems
, pp. 139-184
-
-
Hawksworth, D.L.1
-
48
-
-
77249086587
-
Bayesian inference of species trees from multilocus data
-
HELED, J., AND A. J. DRUMMOND. 2010. Bayesian inference of species trees from multilocus data. Molecular Biology and Evolution 27: 570-580.
-
(2010)
Molecular Biology and Evolution
, vol.27
, pp. 570-580
-
-
Heled, J.1
Drummond, A.J.2
-
49
-
-
78751481764
-
Single origin and subsequent diversifi cation of central Andean endemic Umbilicaria species
-
HESTMARK, G., J. MIADLIKOWSKA, F. KAUFF, E. FRAKER, K. MOLNAR, AND F. LUTZONI. 2011. Single origin and subsequent diversifi cation of central Andean endemic Umbilicaria species. Mycologia 103: 45-56.
-
(2011)
Mycologia
, vol.103
, pp. 45-56
-
-
Hestmark, G.1
Miadlikowska, J.2
Kauff, F.3
Fraker, E.4
Molnar, K.5
Lutzoni, F.6
-
51
-
-
67650931294
-
Ecological change, range fl uctuations and population dynamics during the Pleistocene
-
HOFREITER, M., AND J. STEWART. 2009. Ecological change, range fl uctuations and population dynamics during the Pleistocene. Current Biology 19: R584-R594.
-
(2009)
Current Biology
, vol.19
-
-
Hofreiter, M.1
Stewart, J.2
-
52
-
-
34247566733
-
Phylogenetic comparison of protein-coding versus ribosomal RNA-coding sequence data: A case study of the Lecanoromycetes (Ascomycota)
-
HOFSTETTER, V., J. MIADLIKOWSKA, F. KAUFF, AND F. LUTZONI. 2007. Phylogenetic comparison of protein-coding versus ribosomal RNA-coding sequence data: A case study of the Lecanoromycetes (Ascomycota). Molecular Phylogenetics and Evolution 44: 412-426.
-
(2007)
Molecular Phylogenetics and Evolution
, vol.44
, pp. 412-426
-
-
Hofstetter, V.1
Miadlikowska, J.2
Kauff, F.3
Lutzoni, F.4
-
53
-
-
0036695118
-
Mathematical consequences of the genealogical species concept
-
HUDSON, R. R., AND J. A. COYNE. 2002. Mathematical consequences of the genealogical species concept. Evolution 56: 1557.
-
(2002)
Evolution
, vol.56
, pp. 1557
-
-
Hudson, R.R.1
Coyne, J.A.2
-
54
-
-
33745904168
-
Island radiation on a continental scale: Exceptional rates of plant diversifi cation after uplift of the Andes
-
HUGHES, C., AND R. EASTWOOD. 2006. Island radiation on a continental scale: Exceptional rates of plant diversifi cation after uplift of the Andes. Proceedings of the National Academy of Sciences, USA 103: 10334-10339.
-
(2006)
Proceedings of the National Academy of Sciences, USA
, vol.103
, pp. 10334-10339
-
-
Hughes, C.1
Eastwood, R.2
-
55
-
-
26944473282
-
Cryptic Neogene vicariance and Quaternary dispersal of the red-spotted toad (Bufo punctatus): Insights on the evolution of North American warm desert biotas
-
JAEGER, J. R., B. R. RIDDLE, AND D. F. BRADFORD. 2005. Cryptic Neogene vicariance and Quaternary dispersal of the red-spotted toad (Bufo punctatus): Insights on the evolution of North American warm desert biotas. Molecular Ecology 14: 3033-3048.
-
(2005)
Molecular Ecology
, vol.14
, pp. 3033-3048
-
-
Jaeger, J.R.1
Riddle, B.R.2
Bradford, D.F.3
-
56
-
-
84959806898
-
A concern for evidence and a phylogenetic hypothesis for relationships among Epicrates (Boidae, Serpentes)
-
KLUGE, A. G. 1989. A concern for evidence and a phylogenetic hypothesis for relationships among Epicrates (Boidae, Serpentes). Systematic Zoology 38: 7-25.
-
(1989)
Systematic Zoology
, vol.38
, pp. 7-25
-
-
Kluge, A.G.1
-
57
-
-
0033823253
-
Tests of Pleistocene speciation in montane grasshoppers (genus Melanoplus) from sky islands of western North America
-
KNOWLES, L. L. 2000. Tests of Pleistocene speciation in montane grasshoppers (genus Melanoplus) from sky islands of western North America. Evolution 54: 1337-1348.
-
(2000)
Evolution
, vol.54
, pp. 1337-1348
-
-
Knowles, L.L.1
-
58
-
-
70450233546
-
Estimating species trees: Methods of phylogenetic analysis when there is incongruence across genes
-
KNOWLES, L. L. 2009. Estimating species trees: Methods of phylogenetic analysis when there is incongruence across genes. Systematic Biology 55: 463-467.
-
(2009)
Systematic Biology
, vol.55
, pp. 463-467
-
-
Knowles, L.L.1
-
59
-
-
34447620474
-
Delimiting species without monophyletic gene trees
-
KNOWLES, L. L., AND B. C. CARSTENS. 2007. Delimiting species without monophyletic gene trees. Systematic Biology 56: 887-895.
-
(2007)
Systematic Biology
, vol.56
, pp. 887-895
-
-
Knowles, L.L.1
Carstens, B.C.2
-
60
-
-
20344407585
-
The relationship between pedogenic and geomorphic processes in mountainous tropical forested area in Sierra Madre del Sur, Mexico
-
KRASILNIKOV, P. V., N. E. G. CALDERÓN, S. N. SEDOV, E. V. GÓMEZ, AND R. R. BELLO. 2005. The relationship between pedogenic and geomorphic processes in mountainous tropical forested area in Sierra Madre del Sur, Mexico. Catena 62: 14-44.
-
(2005)
Catena
, vol.62
, pp. 14-44
-
-
Krasilnikov, P.V.1
Calderón, N.E.G.2
Sedov, S.N.3
Gómez, E.V.4
Bello, R.R.5
-
61
-
-
0035731840
-
A gene genealogical approach to recognize phylogenetic species boundaries in the lichenized fungus
-
KROKEN, S., AND J. W. TAYLOR. 2001. A gene genealogical approach to recognize phylogenetic species boundaries in the lichenized fungus Letharia. Mycologia 93: 38-53.
-
(2001)
Letharia. Mycologia
, vol.93
, pp. 38-53
-
-
Kroken, S.1
Taylor, J.W.2
-
62
-
-
84860552871
-
Is recombination a problem for species-tree analyses?
-
LANIER, H. C., AND L. L. KNOWLES. 2012. Is recombination a problem for species-tree analyses? Systematic Biology 61: 691-701.
-
(2012)
Systematic Biology
, vol.61
, pp. 691-701
-
-
Lanier, H.C.1
Knowles, L.L.2
-
63
-
-
0032845186
-
Design of a primer for ribosomal DNA internal transcribed spacer with enhanced specifi city for ascomycetes
-
LARENA, I., O. SALAZAR, V. GONZÁLEZ, M. C. JULIÁN, AND V. RUBIO. 1999. Design of a primer for ribosomal DNA internal transcribed spacer with enhanced specifi city for ascomycetes. Journal of Biotechnology 75: 187-194.
-
(1999)
Journal of Biotechnology
, vol.75
, pp. 187-194
-
-
Larena, I.1
Salazar, O.2
González, V.3
Julián, M.C.4
Rubio, V.5
-
64
-
-
82555168538
-
Pleistocene climate, phylogeny, and climate envelope models: An integrative approach to better understand species' response to climate change
-
LAWING, A. M., AND P. D. POLLY. 2011. Pleistocene climate, phylogeny, and climate envelope models: An integrative approach to better understand species' response to climate change. PLoS ONE 6: e28554.
-
(2011)
PLoS ONE
, vol.6
-
-
Lawing, A.M.1
Polly, P.D.2
-
65
-
-
33947250760
-
Phylogenetic evidence of host-specifi c cryptic species in the anther smut fungus
-
LE GAC, M., M. E. HOOD, E. FOURNIER, AND T. GIRAUD. 2007. Phylogenetic evidence of host-specifi c cryptic species in the anther smut fungus. Evolution 61: 15-26.
-
(2007)
Evolution
, vol.61
, pp. 15-26
-
-
Le Gac, M.1
Hood, M.E.2
Fournier, E.3
Giraud, T.4
-
66
-
-
70649110122
-
Species Tree discordance traces to phylogeographic clade boundaries in North American fence lizards (Sceloporus)
-
LEACHÉ, A. D. 2009. Species Tree discordance traces to phylogeographic clade boundaries in North American fence lizards (Sceloporus). Systematic Biology 58: 547-559.
-
(2009)
Systematic Biology
, vol.58
, pp. 547-559
-
-
Leaché, A.D.1
-
67
-
-
84865972741
-
Micocene and Pliocene dominated diversifi cation of the lichenforming fungal genus Melanohalea (Parmeliaceae, Ascomycota) and Pleistocene population expansions
-
doi:10.1186/1471-2148-12-176
-
LEAVITT, S. D., T. L. ESSLINGER, P. K. DIVAKAR, AND H. T. LUMBSCH. 2012. Micocene and Pliocene dominated diversifi cation of the lichenforming fungal genus Melanohalea (Parmeliaceae, Ascomycota) and Pleistocene population expansions. BMC Evolutionary Biology 12: 176. doi:10.1186/1471-2148-12-176
-
(2012)
BMC Evolutionary Biology
, vol.12
, pp. 176
-
-
Leavitt, S.D.1
Esslinger, T.L.2
Divakar, P.K.3
Lumbsch, H.T.4
-
68
-
-
84870515491
-
Micocene divergence, phenotypically cryptic lineages, and contrasting distribution patterns in common camofl auge lichen fungi (Parmeliaceae, Ascomycota)
-
In press
-
LEAVITT, S. D., T. L. ESSLINGER, P. K. DIVAKAR, AND H. T. LUMBSCH. In press. Micocene divergence, phenotypically cryptic lineages, and contrasting distribution patterns in common camofl auge lichen fungi (Parmeliaceae, Ascomycota). Biological Journal of the Linnean Society.
-
Biological Journal of the Linnean Society.
-
-
Leavitt, S.D.1
Esslinger, T.L.2
Divakar, P.K.3
Lumbsch, H.T.4
-
69
-
-
79955484637
-
Complex patterns of speciation in cosmopolitan "rock posy" lichens-Discovering and delimiting cryptic fungal species in the lichen-forming Rhizoplaca melanophthalma species-complex (Lecanoraceae, Ascomycota)
-
LEAVITT, S. D., J. D. F ANKHAUSER, D. H. LEAVITT, L. D. PORTER, L. A. JOHNSON, AND L. L. ST. CLAIR. 2011a. Complex patterns of speciation in cosmopolitan "rock posy" lichens-Discovering and delimiting cryptic fungal species in the lichen-forming Rhizoplaca melanophthalma species-complex (Lecanoraceae, Ascomycota). Molecular Phylogenetics and Evolution 59: 587-602.
-
(2011)
Molecular Phylogenetics and Evolution
, vol.59
, pp. 587-602
-
-
Leavitt, S.D.1
Ankhauser, J.D.F.2
Leavitt, D.H.3
Porter, L.D.4
Johnson, L.A.5
St. Clair, L.L.6
-
70
-
-
79959649686
-
Species delimitation in taxonomically diffi cult lichen-forming fungi: An example from morphologically and chemically diverse Xanthoparmelia (Parmeliaceae) in North America
-
LEAVITT, S. D., L. A. JOHNSON, T. GOWARD, AND L. L. ST. CLAIR. 2011b. Species delimitation in taxonomically diffi cult lichen-forming fungi: An example from morphologically and chemically diverse Xanthoparmelia (Parmeliaceae) in North America. Molecular Phylogenetics and Evolution 60: 317-332.
-
(2011)
Molecular Phylogenetics and Evolution
, vol.60
, pp. 317-332
-
-
Leavitt, S.D.1
Johnson, L.A.2
Goward, T.3
St. Clair, L.L.4
-
71
-
-
79851482422
-
Species delimitation and evolution in morphologically and chemically diverse communities of the lichen-forming genus Xanthoparmelia (Parmeliaceae, Ascomycota) in western North America
-
LEAVITT, S. D., L. JOHNSON, AND L. L. ST. CLAIR. 2011c. Species delimitation and evolution in morphologically and chemically diverse communities of the lichen-forming genus Xanthoparmelia (Parmeliaceae, Ascomycota) in western North America. American Journal of Botany 98: 175-188.
-
(2011)
American Journal of Botany
, vol.98
, pp. 175-188
-
-
Leavitt, S.D.1
Johnson, L.2
St. Clair, L.L.3
-
72
-
-
0035576060
-
Unalignable sequences and molecular evolution
-
LEE, M. S. Y. 2001. Unalignable sequences and molecular evolution. Trends in Ecology & Evolution 16: 681-685.
-
(2001)
Trends in Ecology & Evolution
, vol.16
, pp. 681-685
-
-
Lee, M.S.Y.1
-
73
-
-
67649240664
-
Rapid and accurate large-scale coestimation of sequence alignments and phylogenetic trees
-
LIU, K., S. RAGHAVAN, S. NELESEN, C. R. LINDER, AND T. WARNOW. 2009a. Rapid and accurate large-scale coestimation of sequence alignments and phylogenetic trees. Science 324: 1561-1564.
-
(2009)
Science
, vol.324
, pp. 1561-1564
-
-
Liu, K.1
Raghavan, S.2
Nelesen, S.3
Linder, C.R.4
Warnow, T.5
-
74
-
-
84555194934
-
SATé-II: Very fast and accurate simultaneous estimation of multiple sequence alignments and phylogenetic trees
-
LIU, K., T. J. WARNOW, M. T. HOLDER, S. M. NELESEN, J. YU, A. P. STAMATAKIS, AND C. R. LINDER. 2012. SATé-II: Very fast and accurate simultaneous estimation of multiple sequence alignments and phylogenetic trees. Systematic Biology 61: 90-106.
-
(2012)
Systematic Biology
, vol.61
, pp. 90-106
-
-
Liu, K.1
Warnow, T.J.2
Holder, M.T.3
Nelesen, S.M.4
Yu, J.5
Stamatakis, A.P.6
Linder, C.R.7
-
75
-
-
68049099068
-
Coalescent methods for estimating phylogenetic trees
-
LIU, L., L. YU, L. KUBATKO, D. K. PEARL, AND S. V. EDWARDS. 2009b. Coalescent methods for estimating phylogenetic trees. Molecular Phylogenetics and Evolution 53: 320-328.
-
(2009)
Molecular Phylogenetics and Evolution
, vol.53
, pp. 320-328
-
-
Liu, L.1
Yu, L.2
Kubatko, L.3
Pearl, D.K.4
Edwards, S.V.5
-
76
-
-
39549084164
-
Phylogenetic patterns of morphological and chemical characters and reproductive mode in the Heterodermia obscurata group in Costa Rica (Ascomycota, Physciaceae)
-
LÜCKING, R., R. D EL PRADO, H. T. LUMBSCH, S. WILL-WOLF, A. APTROOT, H. J. M. SIPMAN, L. UMAÑA, ET AL. 2008. Phylogenetic patterns of morphological and chemical characters and reproductive mode in the Heterodermia obscurata group in Costa Rica (Ascomycota, Physciaceae). Systematics and Biodiversity 6: 31-41.
-
(2008)
Systematics and Biodiversity
, vol.6
, pp. 31-41
-
-
Lücking, R.1
El Prado, R.D.2
Lumbsch, H.T.3
Will-Wolf, S.4
Aptroot, A.5
Sipman, H.J.M.6
Umaña, L.7
-
77
-
-
78650935230
-
PICS-Ord: Unlimited coding of ambiguous regions by pairwise identity and cost scores ordination
-
LÜCKING, R., B. HODKINSON, A. STAMATAKIS, AND R. CARTWRIGHT. 2011. PICS-Ord: Unlimited coding of ambiguous regions by pairwise identity and cost scores ordination. BMC Bioinformatics 12: 10.
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 10
-
-
Lücking, R.1
Hodkinson, B.2
Stamatakis, A.3
Cartwright, R.4
-
78
-
-
72449194236
-
Fungi evolved right on track
-
LÜCKING, R., S. H UHNDORF, D. H. PFISTER, E. R. PLATA, AND H. T. LUMBSCH. 2009b. Fungi evolved right on track. Mycologia 101: 810-822.
-
(2009)
Mycologia
, vol.101
, pp. 810-822
-
-
Lücking, R.1
Uhndorf, S.H.2
Pfister, D.H.3
Plata, E.R.4
Lumbsch, H.T.5
-
79
-
-
78650895344
-
How many tropical lichens are there. really?
-
LÜCKING, R., E. RIVAS, J. PLATA, L. CHAVES, L. UMANA, AND H. J. M. SIPMAN. 2009a. How many tropical lichens are there. really? Bibliotheca Lichenologica 100: 399-418.
-
(2009)
Bibliotheca Lichenologica
, vol.100
, pp. 399-418
-
-
Lücking, R.1
Rivas, E.2
Plata, J.3
Chaves, L.4
Umana, L.5
Sipman, H.J.M.6
-
80
-
-
0032124971
-
The use of metabolic data in lichenology at the species and subspecifi c levels
-
LUMBSCH, H. T. 1998. The use of metabolic data in lichenology at the species and subspecifi c levels. Lichenologist 30: 357-367.
-
(1998)
Lichenologist
, vol.30
, pp. 357-367
-
-
Lumbsch, H.T.1
-
81
-
-
80755189426
-
Goodbye morphology? A paradigm shift in the delimitation of species in lichenized fungi
-
LUMBSCH, H. T., AND S. D. LEAVITT. 2011. Goodbye morphology? A paradigm shift in the delimitation of species in lichenized fungi. Fungal Diversity 50: 59-72.
-
(2011)
Fungal Diversity
, vol.50
, pp. 59-72
-
-
Lumbsch, H.T.1
Leavitt, S.D.2
-
82
-
-
32044471897
-
Assembling the fungal tree of life: Progress, classifi cation, and evolution of subcellular traits
-
LUTZONI, F., F. K AUFF, C. J. C OX, D. MCLAUGHLIN, G. C ELIO, B. DENTINGER, M. PADAMSEE, ET AL. 2004. Assembling the fungal tree of life: Progress, classifi cation, and evolution of subcellular traits. American Journal of Botany 91: 1446-1480.
-
(2004)
American Journal of Botany
, vol.91
, pp. 1446-1480
-
-
Lutzoni, F.1
Auff, F.K.2
Ox, C.J.C.3
McLaughlin, D.4
Elio, G.C.5
Dentinger, B.6
Padamsee, M.7
-
83
-
-
38849189403
-
Molecular data show that Topeliopsis (Ascomycota, Thelotremataceae) is polyphyletic
-
MANGOLD, A., M. P. MARTÍN, K. KALB, R. LÜCKING, AND H. T. LUMBSCH. 2008. Molecular data show that Topeliopsis (Ascomycota, Thelotremataceae) is polyphyletic. Lichenologist 40: 39-46.
-
(2008)
Lichenologist
, vol.40
, pp. 39-46
-
-
Mangold, A.1
Martín, M.P.2
Kalb, K.3
Lücking, R.4
Lumbsch, H.T.5
-
84
-
-
0000481530
-
A fi rst checklist of the lichen-forming fungi of the Venezuelan Andes
-
MARCANO, V., A. MORALES MÉNDEZ, H. J. M. SIPMAN, AND L. CALDERÓN. 1996. A fi rst checklist of the lichen-forming fungi of the Venezuelan Andes. Tropical Bryology 12: 193-235.
-
(1996)
Tropical Bryology
, vol.12
, pp. 193-235
-
-
Marcano, V.1
Morales Méndez, A.2
Sipman, H.J.M.3
Calderón, L.4
-
85
-
-
0030311441
-
Testing for phylogenetic confl ict among molecular data sets in the tribe Triticeae (Gramineae)
-
MASON-GAMER, R. J., AND E. A. KELLOGG. 1996. Testing for phylogenetic confl ict among molecular data sets in the tribe Triticeae (Gramineae). Systematic Biology 45: 524-545.
-
(1996)
Systematic Biology
, vol.45
, pp. 524-545
-
-
Mason-Gamer, R.J.1
Kellogg, E.A.2
-
86
-
-
0036241312
-
Using RPB1 sequences to improve phylogenetic inference among mushrooms (Inocybe, Agaricales)
-
MATHENY, P. B., Y. J. LIU, J. F. AMMIRATI, AND B. D. HALL. 2002. Using RPB1 sequences to improve phylogenetic inference among mushrooms (Inocybe, Agaricales). American Journal of Botany 89: 688-698.
-
(2002)
American Journal of Botany
, vol.89
, pp. 688-698
-
-
Matheny, P.B.1
Liu, Y.J.2
Ammirati, J.F.3
Hall, B.D.4
-
87
-
-
78650931246
-
Calibrating divergence times on species trees versus gene trees: Implications for speciation history of Aphelocoma jays
-
MCCORMACK, J. E., J. HELED, K. S. DELANEY, A. T. PETERSON, AND L. L. KNOWLES. 2011. Calibrating divergence times on species trees versus gene trees: Implications for speciation history of Aphelocoma jays. Evolution 65: 184-202.
-
(2011)
Evolution
, vol.65
, pp. 184-202
-
-
McCormack, J.E.1
Heled, J.2
Delaney, K.S.3
Peterson, A.T.4
Knowles, L.L.5
-
88
-
-
1242268369
-
New approach to an old problem: Incorporating signal from gap-rich regions of ITS and rDNA large subunit into phylogenetic analyses to resolve the Peltigera canina species complex
-
MIADLIKOWSKA, J., F. L UTZONI, T. G OWARD, S. ZOLLER, AND D. P OSADA. 2 003. New approach to an old problem: Incorporating signal from gap-rich regions of ITS and rDNA large subunit into phylogenetic analyses to resolve the Peltigera canina species complex. Mycologia 95: 1181-1203.
-
(2003)
Mycologia
, vol.95
, pp. 1181-1203
-
-
Miadlikowska, J.1
Utzoni, F.L.2
Oward, T.G.3
Zoller, S.4
Osada, D.P.5
-
89
-
-
84855686661
-
Another example of cryptic diversity in lichen-forming fungi: The new species Parmelia mayi (Ascomycota: Parmeliaceae)
-
MOLINA, M., R. DEL-PRADO, P. DIVAKAR, D. SÁNCHEZ-MATA, AND A. CRESPO. 2011a. Another example of cryptic diversity in lichen-forming fungi: the new species Parmelia mayi (Ascomycota: Parmeliaceae). Organisms, Diversity & Evolution 11: 331-342.
-
(2011)
Organisms, Diversity & Evolution
, vol.11
, pp. 331-342
-
-
Molina, M.1
Del-Prado, R.2
Divakar, P.3
Sánchez-Mata, D.4
Crespo, A.5
-
90
-
-
2442456912
-
Phylogenetic relationships and species concepts in Parmelia s. str. (Parmeliaceae) inferred from nuclear ITS rDNA and β-tubulin sequences
-
MOLINA, M. C., A. CRESPO, O. BLANCO, H. T. LUMBSCH, AND D. L. HAWKSWORTH. 2004. Phylogenetic relationships and species concepts in Parmelia s. str. (Parmeliaceae) inferred from nuclear ITS rDNA and β-tubulin sequences. Lichenologist 36: 37-54.
-
(2004)
Lichenologist
, vol.36
, pp. 37-54
-
-
Molina, M.C.1
Crespo, A.2
Blanco, O.3
Lumbsch, H.T.4
Hawksworth, D.L.5
-
91
-
-
84857278899
-
Parmelia sulcata (Ascomycota: Parmeliaceae), a sympatric monophyletic species complex
-
MOLINA, M. C., P. K. DIVAKAR, A. M. M ILLANES, E. S ÁNCHEZ, R. D ELPRADO, D. L. HAWKSWORTH, AND A. CRESPO. 2011b. Parmelia sulcata (Ascomycota: Parmeliaceae), a sympatric monophyletic species complex. Lichenologist 43: 585-601.
-
(2011)
Lichenologist
, vol.43
, pp. 585-601
-
-
Molina, M.C.1
Divakar, P.K.2
Illanes, A.M.M.3
Ánchez, E.S.4
Elprado, R.D.5
Hawksworth, D.L.6
Crespo, A.7
-
92
-
-
70349409998
-
Accelerated species inventory on Madagascar using coalescent-based models of species delineation
-
MONAGHAN, M. T., R. WILD, M. ELLIOT, T. FUJISAWA, M. BALKE, D. J. G. INWARD, D. C. LEES, ET AL. 2009. Accelerated species inventory on Madagascar using coalescent-based models of species delineation. Systematic Biology 58: 298-311.
-
(2009)
Systematic Biology
, vol.58
, pp. 298-311
-
-
Monaghan, M.T.1
Wild, R.2
Elliot, M.3
Fujisawa, T.4
Balke, M.5
Inward, D.J.G.6
Lees, D.C.7
-
93
-
-
0030481986
-
Uplift and subduction erosion in southwestern Mexico since the Oligocene: Pluton barometry constraints
-
MORÁN-ZENTENO, D. J., P. CORONA, AND G. TOLSON. 1996. Uplift and subduction erosion in southwestern Mexico since the Oligocene: Pluton barometry constraints. Earth and Planetary Science Letters 141: 51-65.
-
(1996)
Earth and Planetary Science Letters
, vol.141
, pp. 51-65
-
-
Morán-Zenteno, D.J.1
Corona, P.2
Tolson, G.3
-
94
-
-
60549089187
-
Explosive Pleistocene diversifi cation and hemispheric expansion of a "great speciator"
-
MOYLE, R. G., C. E. FILARDI, C. E. SMITH, AND J. DIAMOND. 2009. Explosive Pleistocene diversifi cation and hemispheric expansion of a "great speciator". Proceedings of the National Academy of Sciences, USA 106: 1863-1868.
-
(2009)
Proceedings of the National Academy of Sciences, USA
, vol.106
, pp. 1863-1868
-
-
Moyle, R.G.1
Filardi, C.E.2
Smith, C.E.3
Diamond, J.4
-
95
-
-
0035280782
-
β-Tubulin, ITS and group I intron sequences challenge the species pair concept in Physcia aipolia and P. caesia
-
MYLLYS, L., K. LOHTANDER, AND A. TEHLER. 2001. β-Tubulin, ITS and group I intron sequences challenge the species pair concept in Physcia aipolia and P. caesia. Mycologia 93: 335-343.
-
(2001)
Mycologia
, vol.93
, pp. 335-343
-
-
Myllys, L.1
Lohtander, K.2
Tehler, A.3
-
96
-
-
0000258028
-
Population studies among Sonoran Desert species of Parmelia subg. Xanthoparmelia (Parmeliaceae)
-
NASH, T. H. III, AND M. ZAVADA. 1977. Population studies among Sonoran Desert species of Parmelia subg. Xanthoparmelia (Parmeliaceae). American Journal of Botany 64: 664-669.
-
(1977)
American Journal of Botany
, vol.64
, pp. 664-669
-
-
Nash1
Iii, T.H.2
Zavada, M.3
-
97
-
-
0026756206
-
Tempo and mode of evolution revealed from molecular phylogenies
-
NEE, S., A. O. MOOERS, AND P. H. HARVEY. 1992. Tempo and mode of evolution revealed from molecular phylogenies. Proceedings of the National Academy of Sciences, USA 89: 8322-8326.
-
(1992)
Proceedings of the National Academy of Sciences, USA
, vol.89
, pp. 8322-8326
-
-
Nee, S.1
Mooers, A.O.2
Harvey, P.H.3
-
98
-
-
31444442102
-
Latest Cretaceous to Miocene deformation events in the eastern Sierra Madre del Sur, Mexico, inferred from the geometry and age of major structures
-
NIETO-SAMANIEGO, A. F., S. A. A LANIZ-ALVAREZ, G. S ILVA-ROMO, M. H. EGUIZA-CASTRO, AND C. C. MENDOZA-ROSALES. 2006. Latest Cretaceous to Miocene deformation events in the eastern Sierra Madre del Sur, Mexico, inferred from the geometry and age of major structures. Geological Society of America Bulletin 118: 238-252.
-
(2006)
Geological Society of America Bulletin
, vol.118
, pp. 238-252
-
-
Nieto-Samaniego, A.F.1
Laniz-Alvarez, S.A.A.2
Ilva-Romo, G.S.3
Eguiza-Castro, M.H.4
Mendoza-Rosales, C.C.5
-
99
-
-
2042452451
-
The implications of Tertiary and Quaternary sea level rise events for avian distribution patterns in the lowlands of northern South America
-
NORES, M. 2004. The implications of Tertiary and Quaternary sea level rise events for avian distribution patterns in the lowlands of northern South America. Global Ecology and Biogeography 13: 149-161.
-
(2004)
Global Ecology and Biogeography
, vol.13
, pp. 149-161
-
-
Nores, M.1
-
100
-
-
84857260289
-
Conundrums in species concepts: The discovery of a new cryptic species segregated from Parmelina tiliacea (Ascomycota: Parmeliaceae)
-
NÚÑEZ-ZAPATA, J., P. K. DIVAKAR, R. DEL-PRADO, P. CUBAS, D. L. HAWKSWORTH, AND A. CRESPO. 2011. Conundrums in species concepts: The discovery of a new cryptic species segregated from Parmelina tiliacea (Ascomycota: Parmeliaceae). Lichenologist 43: 603-616.
-
(2011)
Lichenologist
, vol.43
, pp. 603-616
-
-
Núñez-Zapata, J.1
Divakar, P.K.2
Del-Prado, R.3
Cubas, P.4
Hawksworth, D.L.5
Crespo, A.6
-
101
-
-
39149141072
-
AWTY (are we there yet?): A system for graphical exploration of MCMC convergence in Bayesian phylogenetics
-
NYLANDER, J. A. A., J. C. WILGENBUSCH, D. L. WARREN, AND D. L. SWOFFORD. 2008. AWTY (are we there yet?): A system for graphical exploration of MCMC convergence in Bayesian phylogenetics. Bioinformatic 24: 581-583.
-
(2008)
Bioinformatic
, vol.24
, pp. 581-583
-
-
Nylander, J.A.A.1
Wilgenbusch, J.C.2
Warren, D.L.3
Swofford, D.L.4
-
102
-
-
76349095596
-
Phylogeography and divergence date estimates of a lichen species complex with a disjunct distribution pattern
-
OTÁLORA, M. A. G., I. MARTÍNEZ, G. ARAGÓN, AND M. C. MOLINA. 2010. Phylogeography and divergence date estimates of a lichen species complex with a disjunct distribution pattern. American Journal of Botany 97: 216-223.
-
(2010)
American Journal of Botany
, vol.97
, pp. 216-223
-
-
Otálora, M.A.G.1
Martínez, I.2
Aragón, G.3
Molina, M.C.4
-
103
-
-
70349334021
-
Do the Oaxacan Highlands represent a natural biotic unit? A cladistic biogeographical test based on vertebrate taxa
-
PANIAGUA, L. L., AND J. J. MORRONE. 2009. Do the Oaxacan Highlands represent a natural biotic unit? A cladistic biogeographical test based on vertebrate taxa. Journal of Biogeography 36: 1939-1944.
-
(2009)
Journal of Biogeography
, vol.36
, pp. 1939-1944
-
-
Paniagua, L.L.1
Morrone, J.J.2
-
104
-
-
1642324511
-
Historical climate change and speciation: Neotropical seasonally dry forest plants show patterns of both Tertiary and Quaternary diversifi cation
-
PENNINGTON, R. T., M. LAVIN, D. E. PRADO, C. A. PENDRY, S. K. PELL, AND C. A. BUTTERWORTH. 2004. Historical climate change and speciation: Neotropical seasonally dry forest plants show patterns of both Tertiary and Quaternary diversifi cation. Philosophical Transactions of the Royal Society of London, B, Biological Sciences 359: 515-538.
-
(2004)
Philosophical Transactions of the Royal Society of London, B, Biological Sciences
, vol.359
, pp. 515-538
-
-
Pennington, R.T.1
Lavin, M.2
Prado, D.E.3
Pendry, C.A.4
Pell, S.K.5
Butterworth, C.A.6
-
105
-
-
77956391440
-
Contrasting plant diversifi cation histories within the Andean biodiversity hotspot
-
PENNINGTON, R. T., M. LAVIN, T. SÄRKINEN, G. P. LEWIS, B. B. KLITGAARD, AND C. E. HUGHES. 2010. Contrasting plant diversifi cation histories within the Andean biodiversity hotspot. Proceedings of the National Academy of Sciences, USA 107: 13783-13787.
-
(2010)
Proceedings of the National Academy of Sciences, USA
, vol.107
, pp. 13783-13787
-
-
Pennington, R.T.1
Lavin, M.2
Särkinen, T.3
Lewis, G.P.4
Klitgaard, B.B.5
Hughes, C.E.6
-
106
-
-
34548444940
-
Sequence-based species delimitation for the DNA taxonomy of undescribed insects
-
PONS, J., T. G. BARRACLOUGH, J. GOMEZ-ZURITA, A. CARDOSO, D. P. DURAN, S. HAZELL, S. KAMOUN, ET AL. 2006. Sequence-based species delimitation for the DNA taxonomy of undescribed insects. Systematic Biology 55: 595-609.
-
(2006)
Systematic Biology
, vol.55
, pp. 595-609
-
-
Pons, J.1
Barraclough, T.G.2
Gomez-Zurita, J.3
Cardoso, A.4
Duran, D.P.5
Hazell, S.6
Kamoun, S.7
-
107
-
-
45849154165
-
jModelTest: Phylogenetic model averaging
-
POSADA, D. 2008. jModelTest: Phylogenetic model averaging. Molecular Biology and Evolution 25: 1253-1256.
-
(2008)
Molecular Biology and Evolution
, vol.25
, pp. 1253-1256
-
-
Posada, D.1
-
108
-
-
25644460037
-
Cryptic speciation in the cosmopolitan and clonal human pathogenic fungus
-
PRINGLE, A., D. M. BAKER, J. L. PLATT, J. P. WARES, J. P. LATGÉ, AND J. W. TAYLOR. 2005. Cryptic speciation in the cosmopolitan and clonal human pathogenic fungus Aspergillus fumigatus. Evolution 59: 1886-1899.
-
(2005)
Aspergillus fumigatus. Evolution
, vol.59
, pp. 1886-1899
-
-
Pringle, A.1
Baker, D.M.2
Platt, J.L.3
Wares, J.P.4
Latgé, J.P.5
Taylor, J.W.6
-
109
-
-
80054961827
-
Lichen systematics: The role of morphological and molecular data to reconstruct phylogenetic relationships
-
Springer, Berlin, Germany
-
PRINTZEN, C. 2009. Lichen systematics: The role of morphological and molecular data to reconstruct phylogenetic relationships. Progress in Botany vol. 71, 233-275. Springer, Berlin, Germany.
-
(2009)
Progress in Botany
, vol.71
, pp. 233-275
-
-
Printzen, C.1
-
112
-
-
33750220338
-
Quaternary speciation in the Neotropics
-
RULL, V. 2006. Quaternary speciation in the Neotropics. Molecular Ecology 15: 4257-4259.
-
(2006)
Molecular Ecology
, vol.15
, pp. 4257-4259
-
-
Rull, V.1
-
113
-
-
44249105411
-
Speciation timing and neotropical biodiversity: The Tertiary-Quaternary debate in the light of molecular phylogenetic evidence
-
RULL, V. 2008. Speciation timing and neotropical biodiversity: The Tertiary-Quaternary debate in the light of molecular phylogenetic evidence. Molecular Ecology 17: 2722-2729.
-
(2008)
Molecular Ecology
, vol.17
, pp. 2722-2729
-
-
Rull, V.1
-
114
-
-
84859972408
-
Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi
-
SCHOCH, C. L., K. A. SEIFERT, S. HUHNDORF, V. ROBERT, J. L. SPOUGE, C. A. LEVESQUE, W. CHEN, ET AL. 2012. Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi. Proceedings of the National Academy of Sciences, USA 109: 6241-6246.
-
(2012)
Proceedings of the National Academy of Sciences, USA
, vol.109
, pp. 6241-6246
-
-
Schoch, C.L.1
Seifert, K.A.2
Huhndorf, S.3
Robert, V.4
Spouge, J.L.5
Levesque, C.A.6
Chen, W.7
-
115
-
-
79955805163
-
Recent origin, active speciation and dispersal for the lichen genus Nephroma (Peltigerales) in Macaronesia
-
SÉRUSIAUX, E., J. C. VILLARREAL A, T. WHEELER, AND B. GOFFINET. 2011. Recent origin, active speciation and dispersal for the lichen genus Nephroma (Peltigerales) in Macaronesia. Journal of Biogeography 38: 1138-1151.
-
(2011)
Journal of Biogeography
, vol.38
, pp. 1138-1151
-
-
Sérusiaux, E.1
Villarreal, J.C.2
Wheeler, A.T.3
Goffinet, B.4
-
116
-
-
0001316878
-
Pleistocene changes in the fl ora of the high tropical Andes
-
SIMPSON, B. B. 1975. Pleistocene changes in the fl ora of the high tropical Andes. Paleobiology 1: 273-294.
-
(1975)
Paleobiology
, vol.1
, pp. 273-294
-
-
Simpson, B.B.1
-
117
-
-
0036101810
-
The signifi cance of the northern Andes for lichens
-
SIPMAN, H. J. M. 2002. The signifi cance of the northern Andes for lichens. Botanical Review 68: 88-99.
-
(2002)
Botanical Review
, vol.68
, pp. 88-99
-
-
Sipman, H.J.M.1
-
118
-
-
0011827717
-
Results of a botanical expedition to Mount Roraima, Guyana. II. Lichens
-
SIPMAN, H. J. M., AND A. APTROOT. 1992. Results of a botanical expedition to Mount Roraima, Guyana. II. Lichens. Tropical Bryology 5: 79-107.
-
(1992)
Tropical Bryology
, vol.5
, pp. 79-107
-
-
Sipman, H.J.M.1
Aptroot, A.2
-
119
-
-
28944432140
-
Global dispersal and ancient cryptic species in the smallest marine eukaryotes
-
ŠLAPETA, J., P. LÓPEZ-GARCÍA, AND D. MOREIRA. 2006. Global dispersal and ancient cryptic species in the smallest marine eukaryotes. Molecular Biology and Evolution 23: 23-29.
-
(2006)
Molecular Biology and Evolution
, vol.23
, pp. 23-29
-
-
Šlapeta, J.1
López-García, P.2
Moreira, D.3
-
120
-
-
0036901050
-
Biogeographical crossroads as priority areas for conservation
-
SPECTOR, S. 2002. Biogeographical crossroads as priority areas for conservation. Conservation Biology 16: 1480-1487.
-
(2002)
Conservation Biology
, vol.16
, pp. 1480-1487
-
-
Spector, S.1
-
121
-
-
33750403801
-
RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
-
STAMATAKIS, A. 2006. RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22: 2688-2690.
-
(2006)
Bioinformatics
, vol.22
, pp. 2688-2690
-
-
Stamatakis, A.1
-
122
-
-
50249100595
-
A rapid bootstrap algorithm for the RAxML Web servers
-
STAMATAKIS, A., P. HOOVER, AND J. ROUGEMONT. 2008. A rapid bootstrap algorithm for the RAxML Web servers. Systematic Biology 57: 758-771.
-
(2008)
Systematic Biology
, vol.57
, pp. 758-771
-
-
Stamatakis, A.1
Hoover, P.2
Rougemont, J.3
-
123
-
-
0034091330
-
Comparative phylogeography of Mesoamerican highland rodents: Concerted versus independent response to past climatic fl uctuations
-
SULLIVAN, J., E. ARELLANO, AND D. S. ROGERS. 2000. Comparative phylogeography of Mesoamerican highland rodents: Concerted versus independent response to past climatic fl uctuations. American Naturalist 155: 755-768.
-
(2000)
American Naturalist
, vol.155
, pp. 755-768
-
-
Sullivan, J.1
Arellano, E.2
Rogers, D.S.3
-
124
-
-
34547489084
-
Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments
-
TALAVERA, G., AND J. CASTRESANA. 2007. Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments. Systematic Biology 56: 564-577.
-
(2007)
Systematic Biology
, vol.56
, pp. 564-577
-
-
Talavera, G.1
Castresana, J.2
-
125
-
-
34247601439
-
Dating divergences in the fungal tree of life: Review and new analyses
-
TAYLOR, J. W., AND M. L. BERBEE. 2006. Dating divergences in the fungal tree of life: Review and new analyses. Mycologia 98: 838-849.
-
(2006)
Mycologia
, vol.98
, pp. 838-849
-
-
Taylor, J.W.1
Berbee, M.L.2
-
126
-
-
0034772714
-
Parmeliopsis ambigua and P. hyperopta (Parmeliaceae): Species or chemotypes?
-
TEHLER, A., AND M. KÄLLERSJÖ. 2001. Parmeliopsis ambigua and P. hyperopta (Parmeliaceae): Species or chemotypes? Lichenologist (London, England) 33: 403-408.
-
(2001)
Lichenologist (London, England)
, vol.33
, pp. 403-408
-
-
Tehler, A.1
Källersjö, M.2
-
127
-
-
79851472985
-
Xanthoparmelia lineola s. l. in Australia and North America
-
THELL, A., J. A. ELIX, AND U. SØCHTING. 2009. Xanthoparmelia lineola s. l. in Australia and North America. Bibliotheca Lichenologica 99: 393-404.
-
(2009)
Bibliotheca Lichenologica
, vol.99
, pp. 393-404
-
-
Thell, A.1
Elix, J.A.2
Søchting, U.3
-
128
-
-
20444408975
-
Monophyletic groups within the Parmeliaceae identifi ed by ITS rDNA, β-tubulin and GAPDH sequences
-
THELL, A., T. FEUERER, I. KÄRNEFELT, L. MYLLYS, AND S. STENROOS. 2004. Monophyletic groups within the Parmeliaceae identifi ed by ITS rDNA, β-tubulin and GAPDH sequences. Mycological Progress 3: 297-314.
-
(2004)
Mycological Progress
, vol.3
, pp. 297-314
-
-
Thell, A.1
Feuerer, T.2
Kärnefelt, I.3
Myllys, L.4
Stenroos, S.5
-
129
-
-
70349260273
-
Molecular data show that Bryoria fremontii and B. tortuosa (Parmeliaceae) are conspecifi c
-
VELMALA, S., L. MYLLYS, P. HALONEN, T. GOWARD, AND T. AHTI. 2009. Molecular data show that Bryoria fremontii and B. tortuosa (Parmeliaceae) are conspecifi c. Lichenologist 41: 231-242.
-
(2009)
Lichenologist
, vol.41
, pp. 231-242
-
-
Velmala, S.1
Myllys, L.2
Halonen, P.3
Goward, T.4
Ahti, T.5
-
130
-
-
0025374564
-
Rapid genetic identifi cation and mapping of enzymatically amplifi ed ribosomal DNA from several Cryptococcus species
-
VILGALYS, R., AND M. HESTER. 1990. Rapid genetic identifi cation and mapping of enzymatically amplifi ed ribosomal DNA from several Cryptococcus species. Journal of Bacteriology 172: 4238-4246.
-
(1990)
Journal of Bacteriology
, vol.172
, pp. 4238-4246
-
-
Vilgalys, R.1
Hester, M.2
-
131
-
-
0000502733
-
Pleistocene changes in the fauna and lfora of South America
-
VUILLEUMIER, B. S. 1971. Pleistocene changes in the fauna and lfora of South America. Science 173: 771-780.
-
(1971)
Science
, vol.173
, pp. 771-780
-
-
Vuilleumier, B.S.1
-
132
-
-
0037187586
-
Ecological responses to recent climate change
-
WALTHER, G.-R., E. POST, P. CONVEY, A. MENZEL, C. PARMESANK, T. J. C. BEEBEE, J.-M. FROMENTIN, ET AL. 2002. Ecological responses to recent climate change. Nature 416: 389-395.
-
(2002)
Nature
, vol.416
, pp. 389-395
-
-
Walther, G.-R.1
Post, E.2
Convey, P.3
Menzel, A.4
Parmesank, C.5
Beebee, J.-M.6
Fromentin, T.J.C.7
-
133
-
-
33846062023
-
Database resources of the National Center for Biotechnology Information
-
doi:10.1093/nar/gkl1031
-
WHEELER, D. L., T. BARRETT, D. A. BENSON, S. H. BRYANT, K. CANESE, V. CHETVERNIN, D. M. CHURCH, ET AL. 2007. Database resources of the National Center for Biotechnology Information. Nucleic Acids Research 35: D5-D12. doi:10.1093/nar/gkl1031
-
(2007)
Nucleic Acids Research
, vol.35
-
-
Wheeler, D.L.1
Barrett, T.2
Benson, D.A.3
Bryant, S.H.4
Canese, K.5
Chetvernin, V.6
Church, D.M.7
-
134
-
-
0000432452
-
Amplifi cation and direct sequencing of fungal ribosomal RNA genes for phylogenetics
-
In M. A. Innis, D. H. Gelfand, J. J. Sninsky, and T. J. White, T.J. [eds.], Academic Press, San Diego, California, USA
-
WHITE, T. J., T. D. BRUNS, S. LEE, AND J. TAYLOR. 1990. Amplifi cation and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In M. A. Innis, D. H. Gelfand, J. J. Sninsky, and T. J. White, T.J. [eds.], PCR protocols: A guide to methods and applications,315-322. Academic Press, San Diego, California, USA.
-
(1990)
PCR protocols: A guide to methods and applications
, pp. 315-322
-
-
White, T.J.1
Bruns, T.D.2
Lee, S.3
Taylor, J.4
-
135
-
-
41249087858
-
The delimitation of Antarctic and bipolar species of neuropogonoid Usnea (Ascomycota, Lecanorales): A cohesion approach of species recognition for the Usnea perpusilla complex
-
WIRTZ, N., C. PRINTZEN, AND H. T. LUMBSCH. 2008. The delimitation of Antarctic and bipolar species of neuropogonoid Usnea (Ascomycota, Lecanorales): A cohesion approach of species recognition for the Usnea perpusilla complex. Mycological Research 112: 472-484.
-
(2008)
Mycological Research
, vol.112
, pp. 472-484
-
-
Wirtz, N.1
Printzen, C.2
Lumbsch, H.T.3
-
136
-
-
38349105013
-
An early Cenozoic perspective on greenhouse warming and carbon-cycle dynamics
-
ZACHOS, J. C., G. R. DICKENS, AND R. E. ZEEBE. 2008. An early Cenozoic perspective on greenhouse warming and carbon-cycle dynamics. Nature 451: 279-283.
-
(2008)
Nature
, vol.451
, pp. 279-283
-
-
Zachos, J.C.1
Dickens, G.R.2
Zeebe, R.E.3
-
137
-
-
0035957736
-
Trends, rhythms, and aberrations in global climate 65 Ma to present
-
ZACHOS, J., M. PAGANI, L. SLOAN, E. THOMAS, AND K. BILLUPS. 2001. Trends, rhythms, and aberrations in global climate 65 Ma to present. Science 292: 686-693
-
(2001)
Science
, vol.292
, pp. 686-693
-
-
Zachos, J.1
Pagani, M.2
Sloan, L.3
Thomas, E.4
Billups, K.5
|