Unalignable sequences and molecular evolution

Trends in Ecology and Evolution

Volumn 16, Issue 12, 2001, Pages 681-685

  Lee, Michael S Y ^a  

^a SOUTH AUSTRALIAN MUSEUM   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

PROTEIN;

EVOLUTION; MOLECULAR ANALYSIS; PHYLOGENETICS;

ANALYTIC METHOD; DNA SEQUENCE; GENE DELETION; GENETIC PROCEDURES; GENOME; MOLECULAR EVOLUTION; NONHUMAN; PHYLOGENY; PROMOTER REGION; REVIEW; SEQUENCE ANALYSIS;

EID: 0035576060     PISSN: 01695347     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0169-5347(01)02313-8     Document Type: Review

References (23)

1. Sequence alignment, parameter sensitivity, and the phylogenetic analysis of molecular data
2. Integrating ambiguously aligned regions of DNA sequences in phylogenetic analysis without violating positional homology
3. Alignment-ambiguous nucleotide sites and the exclusion of systematic data
4. The mitochondrial genomes of the iguana (Iguana iguana) and the caiman (Caiman crocodylus): Implications for amniote phylogeny
5. Highly congruent molecular support for a diverse superordinal clade of endemic African mammals
6. Phylogenetic inference
7. Is there a justification for differential a priori weighting in coding sequences? A case study from rbcL and Apocynaceae s.l.
8. The triangle inequality and character analysis
9. Ribosomal RNA in vertebrates: Evolution and phylogenetic implications
10. Estimating the transition-transversion ratio from independent pairwise comparisons with an assumed phylogeny
11. Elision: A method for accommodating multiple molecular sequence alignments with alignment-ambiguous sites
12. Multiple sequence alignment in phylogenetic analysis
13. Exploring the behavior of POY, a program for direct optimization of molecular data
14. A new method to localize and test the significance of incongruence: Detecting domain shuffling in the nuclear receptor superfamily
15. A probabilistic treatment of phylogeny and sequence alignment
16. A rational basis for a priori character weighting
17. An evaluation of cladistic and character analyses as hypothetico-deductive procedures, and the consequences for character weighting
18. Likelihood-based tests of topologies in phylogenetics
19. Fixed character states and the optimization of molecular sequence data
20. Homology and DNA sequence data