Molecular data show that Topeliopsis (Ascomycota, Thelotremataceae) is polyphyletic

Lichenologist

Volumn 40, Issue 1, 2008, Pages 39-46

  Mangold, Armin ^a,b   Martín, María P ^c   Kalb, Klaus ^d   Lücking, Robert ^a   Lumbsch, H Thorsten ^a  

^a FIELD MUSEUM OF NATURAL HISTORY   (United States)

^b UNIVERSITY OF DUISBURG ESSEN   (Germany)

^c CSIC   (Spain)

^d UNIVERSITY OF REGENSBURG   (Germany)

Author keywords

Graphidaceae; Melanotopelia; Ostropomycetidae; Phylogenetic analysis

Indexed keywords

ASCOMYCOTA; GRAPHIDACEAE; GRAPHIS; LUCKING; THELOTREMATACEAE; TOPELIOPSIS; TOPELIOPSIS RUGOSA; TOPELIOPSIS TOENSBERGII;

EID: 38849189403     PISSN: 00242829     EISSN: 10961135     Source Type: Journal    
DOI: 10.1017/S0024282908007366     Document Type: Article

References (27)

1. Aptroot, A. (2002) New and interesting lichens and lichenicolous fungi in Brazil. Fungal Diversity 9: 15-45.
2. Eriksson, O. (1982) The families of bitunicate Ascomycetes. Opera Botanica 60: 1-209.
3. Felsenstein, J. (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 783-791.
4. Frisch, A. & Kalb, K. (2005) The lichen genus Topeliopsis, additions and corrections. Lichenologist 38: 37-45.
5. Frisch, A., Kalb, K. & Grube,M. (2006) Contributions towards a new systematics of the lichen family Thelotremataceae. Bibliotheca Lichenologica 92: 1-539.
6. Hale, M. E. (1974) Studies on the lichen family Thelotremataceae. 2. Phytologia 27: 490-501.
7. Hale, M. E. (1980) Generic delimitation in the lichen family Thelotremataceae. Mycotaxon 11: 130-138.
8. Hale, M. E. (1981) A revision of the lichen family Thelotremataceae in Sri Lanka. Bulletin of the British Museum (Natural History), Botany Series 8: 227-332.
9. Henssen, A. (1995) Sagiolechia atlantica, eine neue Flechte von den Atlantischen Inseln (Ascomycotina, Ostropales). Bibliotheca Lichenologica 58: 123-136.
10. Hibbett, D. S., Binder M., Bischoff, J. F., Blackwell, M., Cannon, P. F., Eriksson, O., Huhndorf, S., James, T., Kirk, P. M, Lücking, R., Lumbsch, H. T., Lutzoni, F., Matheny, P. B., McLaughlin, D. J., Powell, M. J., Redhead, S., Schoch, C. L., Spatafora, J. W., Stalpers, J. A., Vilgalys, R., Aime, M. C., Aptroot, A., Bauer, R., Begerow, D., Benny, G. L., Castlebury L. A., Crous, P.W., Dai, Y. C., Gams, W., Geiser, D. M., Griffith, G. W., Gueidan, C., Hawksworth, D. L., Hestmark, G., Hosaka, K., Humber, R. A., Hyde, K., Koljalg, U., Kurtzman, C. P., Larsson, K., Lichtwardt, R., Longcore, J., Mia̧dlikowska, J., Miller, A., Moncalvo, J. M., Mozley-Standridge, S., Oberwinkler, F., Parmasto, E., Reeb, V., Rogers, J. D., Roux, C., Ryvarden, L., Sampaio, J. P., Schuessler, A., Sugiyama, J., Thorn, R. G., Tibell, L., Untereiner, W. A.,Walker, C.,Wang, Z.,Weir, A., Weiss, M., White, M., Winka, K., Yao, Y. J., Zhang, N. (2007) A higher-level phylogenetic classification of the Fungi. Mycological Research 111: 509-547.
11. Huelsenbeck, J. P. & Ronquist, F. (2001) MrBAYES, Bayesian inference of phylogenetic trees. Bioinformatics 17: 754-755.
12. Kalb, K. (2001) The lichen genus Topeliopsis in Australia and remarks on Australian Thelotremataceae. Mycotaxon 79: 319-328.
13. Kantvilas, G. & Vëzda, A. (2000) Studies on the lichen family Thelotremataceae in Tasmania. The genus Chroodiscus and its relatives. Lichenologist 32: 325-357.
14. Lumbsch, H. T., Guderley, R. & Feige, G. B. (1997) Ascospore septation in Diploschistes and the taxonomic significance of macro- and microcephalic spore types. Plant Systematics and Evoution 205: 179-184.
15. Lumbsch, H. T., Schmitt, I., Lücking, R., Wiklund, E. & Wedin, M. (2007) The phylogenetic placement of Ostropales within Lecanoromycetes (Ascomycota) revisited. Mycological Research 111: 257-267.
16. Mangold, A., Martín, M. P., Lücking, R. & Lumbsch, H. T. (2008) Molecular phylogeny suggests synonymy of Thelotremataceae within Graphidaceae (Ascomycota: Ostropales). Taxon in press.
17. Miadlikowska, J., Kauff, F., Hofstetter, V., Fraker, E., Grube, M., Hafellner, J., Reeb, V., Hodkinson, B. P., Kukwa, M., Lücking, R., Hestmark, G., Garcia Otalora, M., Rauhut, A., Büdel, B., Scheidegger, C., Timdal, E., Stenroos, S., Brodo, I. M., Perlmutter, G., Ertz, D., Diederich, P., Lendemer, J. C., Tripp, E., Yahr, R., May, P., Gueidan, C., Arnold, E. A., Robertson, C. & Lutzoni, F. (2007) New insights into classification and evolution of the Lecanoromycetes (Pezizomycotina, Ascomycota) from phylogenetic analyses of three ribosomal RNA- and two protein-coding genes. Mycologia 98: 1088-1103.
18. Page, R. D. M. (1996) Treeview: an application to display phylogenetic trees on personal computers. Computer Applications in the Biosciences 12: 357-358.
19. Rodriguez, F., Oliver, J. F., Martín, A. & Medina, J. R. (1990) The general stochastic model of nucleotide substitution. Journal of Theoretical Biology 142: 485-501.
20. Schmidt, H.A., Strimmer, K., Vingron, M. & von Haeseler, A. (2002) TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing. Bioinformatics 18: 502-504.
21. Sherwood, M. A. (1977) The ostropalean fungi. Mycotaxon 5: 1-277.
22. Shimodaira, H. & Hasegawa, M. (2000) Multiple comparisons of log-likelihoods with applications to phylogenetic inference. Molecular Biology and Evolution 16: 1114-1116.
23. Staiger, B. (2002) Die Flechtenfamilie Graphidaceae. Studien in Richtung einer natürlicheren Gliederung. Bibliotheca Lichenologica 85: 1-526.
24. Strimmer, K. & Rambaut, A. (2002) Inferring confidence sets of possibly misspecified gene trees. Proceedings of the Royal Society London, Series B Biological Sciences 269: 137-142.
25. Swofford, D. L. (2003) PAUP*. Phylogenetic Analysis Using Parsimony (*and Other Methods). Sunderland, Mass.: Sinauer Associates.
26. Thompson, J. D., Higgins, D. G. & Gibson, T. J. (1994) Clustal W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Research 22: 4673-4680.
27. Vilgalys, R. & Hester, M. (1990) Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. Journal of Bacteriology 172: 4238-4246.