-
1
-
-
0036371443
-
Modelling viral and immune system dynamics
-
Perelson A. S., Modelling viral and immune system dynamics. Nature Reviews Immunology 2002 2 1 28 36 2-s2.0-0036371443 (Pubitemid 37328773)
-
(2002)
Nature Reviews Immunology
, vol.2
, Issue.1
, pp. 28-36
-
-
Perelson, A.S.1
-
2
-
-
0028388757
-
Nonlinear dynamics of immunogenic tumors: Parameter estimation and global bifurcation analysis
-
2-s2.0-0028388757
-
Kuznetsov V. A., Makalkin I. A., Taylor M. A., Perelson A. S., Nonlinear dynamics of immunogenic tumors: parameter estimation and global bifurcation analysis. Bulletin of Mathematical Biology 1994 56 2 295 321 2-s2.0-0028388757
-
(1994)
Bulletin of Mathematical Biology
, vol.56
, Issue.2
, pp. 295-321
-
-
Kuznetsov, V.A.1
Makalkin, I.A.2
Taylor, M.A.3
Perelson, A.S.4
-
3
-
-
77957079098
-
A statistical mechanics approach to autopoietic immune networks
-
2-s2.0-77957079098 10.1088/1742-5468/2010/07/P07004 P07004
-
Barra A., Agliari E., A statistical mechanics approach to autopoietic immune networks. Journal of Statistical Mechanics 2010 2010 7 2-s2.0-77957079098 10.1088/1742-5468/2010/07/P07004 P07004
-
(2010)
Journal of Statistical Mechanics
, vol.2010
, Issue.7
-
-
Barra, A.1
Agliari, E.2
-
4
-
-
77958464715
-
Stochastic dynamics for idiotypic immune networks
-
2-s2.0-77958464715 10.1016/j.physa.2010.09.004
-
Barra A., Agliari E., Stochastic dynamics for idiotypic immune networks. Physica A 2010 389 24 5903 5911 2-s2.0-77958464715 10.1016/j.physa.2010.09.004
-
(2010)
Physica A
, vol.389
, Issue.24
, pp. 5903-5911
-
-
Barra, A.1
Agliari, E.2
-
5
-
-
0031497880
-
Immunology for physicists
-
Perelson A. S., Weisbush G., Immunology for physicists. Reviews of Modern Physics 1997 69 4 1219 1267 2-s2.0-0031497880 (Pubitemid 127659950)
-
(1997)
Reviews of Modern Physics
, vol.69
, Issue.4
, pp. 1219-1267
-
-
Perelson, A.S.1
Weisbuch, G.2
-
6
-
-
0005448153
-
Effects of vascularization on lymphocyte/tumor cell dynamics: Qualitative features
-
Adam J. A., Effects of vascularization on lymphocyte/tumor cell dynamics: qualitative features. Mathematical and Computer Modelling 1996 23 6 1 10 2-s2.0-0005448153 (Pubitemid 126686205)
-
(1996)
Mathematical and Computer Modelling
, vol.23
, Issue.6
, pp. 1-10
-
-
Adam, J.A.1
-
7
-
-
4744342992
-
Mathematical models of the acute inflammatory response
-
DOI 10.1097/01.ccx.0000139360.30327.69
-
Vodovotz Y., Clermont G., Chow C., An G., Mathematical models of the acute inflammatory response. Current Opinion in Critical Care 2004 10 5 383 390 2-s2.0-4744342992 10.1097/01.ccx.0000139360.30327.69 (Pubitemid 39313509)
-
(2004)
Current Opinion in Critical Care
, vol.10
, Issue.5
, pp. 383-390
-
-
Vodovotz, Y.1
Clermont, G.2
Chow, C.3
An, G.4
-
8
-
-
0036789459
-
Differential segregation in a cell-cell contact interface: The dynamics of the immunological synapse
-
2-s2.0-0036789459
-
Burroughs N. J., Wülfing C., Differential segregation in a cell-cell contact interface: the dynamics of the immunological synapse. Biophysical Journal 2002 83 4 1784 1796 2-s2.0-0036789459
-
(2002)
Biophysical Journal
, vol.83
, Issue.4
, pp. 1784-1796
-
-
Burroughs, N.J.1
Wülfing, C.2
-
9
-
-
4444288465
-
Stop and go traffic to tune T cell responses
-
DOI 10.1016/j.immuni.2004.08.016, PII S1074761304002523
-
Dustin M. L., Stop and go traffic to tune T cell responses. Immunity 2004 21 3 305 314 2-s2.0-4444288465 10.1016/j.immuni.2004.08.016 (Pubitemid 39208332)
-
(2004)
Immunity
, vol.21
, Issue.3
, pp. 305-314
-
-
Dustin, M.L.1
-
10
-
-
0035211030
-
TCR dynamics on the surface of living T cells
-
Favier B., Burroughs N. J., Wedderburn L., Valitutti S., TCR dynamics on the surface of living T cells. International Immunology 2001 13 12 1525 1532 2-s2.0-0035211030 (Pubitemid 33133879)
-
(2001)
International Immunology
, vol.13
, Issue.12
, pp. 1525-1532
-
-
Favier, B.1
Burroughs, N.J.2
Wedderburn, L.3
Valitutti, S.4
-
11
-
-
0035377009
-
Antigen decoding by T lymphocytes: From synapses to fate determination
-
DOI 10.1038/88678
-
Lanzavecchia A., Sallusto F., Antigen decoding by T lymphocytes: from synapses to fate determination. Nature Immunology 2001 2 6 487 492 2-s2.0-0035377009 10.1038/88678 (Pubitemid 33705849)
-
(2001)
Nature Immunology
, vol.2
, Issue.6
, pp. 487-492
-
-
Lanzavecchia, A.1
Sallusto, F.2
-
12
-
-
42549105195
-
Evaluation of MHC class I peptide binding prediction servers: Applications for vaccine research
-
DOI 10.1186/1471-2172-9-8
-
Lin H. H., Ray S., Tongchusak S., Reinherz E. L., Brusic V., Evaluation of MHC class I peptide binding prediction servers: applications for vaccine research. BMC Immunology 2008 9, article 8 2-s2.0-42549105195 10.1186/1471-2172-9-8 (Pubitemid 351583869)
-
(2008)
BMC Immunology
, vol.9
, pp. 8
-
-
Lin, H.H.1
Ray, S.2
Tongchusak, S.3
Reinherz, E.L.4
Brusic, V.5
-
13
-
-
0037154747
-
T cell receptor signaling precedes immunological synapse formation
-
DOI 10.1126/science.1067710
-
Lee K. H., Holdorf A. D., Dustin M. L., Chan A. C., Allen P. M., Shaw A. S., T cell receptor signaling precedes immunological synapse formation. Science 2002 295 5559 1539 1542 2-s2.0-0037154747 10.1126/science.1067710 (Pubitemid 34174012)
-
(2002)
Science
, vol.295
, Issue.5559
, pp. 1539-1542
-
-
Lee, K.-H.1
Holdorf, A.D.2
Dustin, M.L.3
Chan, A.C.4
Allen, P.M.5
Shaw, A.S.6
-
14
-
-
84867288417
-
T-cell activationT-cell-APC interactions
-
Bell E., T-cell activationT-cell-APC interactions. Nature Reviews Immunology 2004 4, article 930
-
(2004)
Nature Reviews Immunology
, vol.4930
-
-
Bell, E.1
-
15
-
-
0037077280
-
Serial triggering of T cell receptors results in incremental accumulation of signaling intermediates
-
DOI 10.1074/jbc.M201613200
-
Borovsky Z., Mishan-Eisenberg G., Yaniv E., Rachmilewitz J., Serial triggering of T cell receptors results in incremental accumulation of signaling intermediates. Journal of Biological Chemistry 2002 277 24 21529 21536 2-s2.0-0037077280 10.1074/jbc.M201613200 (Pubitemid 34952297)
-
(2002)
Journal of Biological Chemistry
, vol.277
, Issue.24
, pp. 21529-21536
-
-
Borovsky, Z.1
Mishan-Eisenberg, G.2
Yaniv, E.3
Rachmilewitz, J.4
-
16
-
-
23144455728
-
T-cell receptor triggering is critically dependent on the dimensions of its peptide-MHC ligand
-
DOI 10.1038/nature03843
-
Choudhuri K., Wiseman D., Brown M. H., Gould K., van der Merwe P. A., T-cell receptor triggering is critically dependent on the dimensions of its peptide-MHC ligand. Nature 2005 436 7050 578 582 2-s2.0-23144455728 10.1038/nature03843 (Pubitemid 41112933)
-
(2005)
Nature
, vol.436
, Issue.7050
, pp. 578-582
-
-
Choudhuri, K.1
Wiseman, D.2
Brown, M.H.3
Gould, K.4
Van Der Merwe, P.A.5
-
17
-
-
64049108784
-
The cellular context of T cell signaling
-
2-s2.0-64049108784 10.1016/j.immuni.2009.03.010
-
Dustin M. L., The cellular context of T cell signaling. Immunity 2009 30 4 482 492 2-s2.0-64049108784 10.1016/j.immuni.2009.03.010
-
(2009)
Immunity
, vol.30
, Issue.4
, pp. 482-492
-
-
Dustin, M.L.1
-
18
-
-
14244262563
-
T cell receptor engagement by peptide - MHC ligands induces a conformational change in the CD3 complex of thymocytes
-
DOI 10.1084/jem.20042036
-
Gil D., Schrum A. G., Alarcón B., Palmer E., T cell receptor engagement by peptideMHC ligands induces a conformational change in the CD3 complex of thymocytes. Journal of Experimental Medicine 2005 201 4 517 522 2-s2.0-14244262563 10.1084/jem.20042036 (Pubitemid 40289542)
-
(2005)
Journal of Experimental Medicine
, vol.201
, Issue.4
, pp. 517-522
-
-
Gil, D.1
Schrum, A.G.2
Alarcon, B.3
Palmer, E.4
-
19
-
-
56749095210
-
Different thermodynamic binding mechanisms and peptide fine specificities associated with a panel of structurally similar high-affinity T cell receptors
-
2-s2.0-56749095210 10.1021/bi801349g
-
Jones L. L., Colf L. A., Bankovich A. J., Stone J. D., Gao Y. G., Choi M. C., Huang R. H., Garcia K. C., Kranz D. M., Different thermodynamic binding mechanisms and peptide fine specificities associated with a panel of structurally similar high-affinity T cell receptors. Biochemistry 2008 47 47 12398 12408 2-s2.0-56749095210 10.1021/bi801349g
-
(2008)
Biochemistry
, vol.47
, Issue.47
, pp. 12398-12408
-
-
Jones, L.L.1
Colf, L.A.2
Bankovich, A.J.3
Stone, J.D.4
Gao, Y.G.5
Choi, M.C.6
Huang, R.H.7
Garcia, K.C.8
Kranz, D.M.9
-
20
-
-
0033534678
-
From TCR engagement to T cell activation: A kinetic view of T cell behavior
-
DOI 10.1016/S0092-8674(00)80952-6
-
Lanzavecchia A., Iezzi G., Viola A., From TCR engagement to T cell activation: a kinetic view of T cell behavior. Cell 1999 96 1 1 4 2-s2.0-0033534678 10.1016/S0092-8674(00)80952-6 (Pubitemid 29044146)
-
(1999)
Cell
, vol.96
, Issue.1
, pp. 1-4
-
-
Lanzavecchia, A.1
Iezzi, G.2
Viola, A.3
-
21
-
-
0010464866
-
Mathematical modelling of the interleukin-2 T-cell system: A comparative study of approaches based on ordinary and delay direrential equations
-
Baker C. T. H., Bocharov G. A., Paul C. A. H., Mathematical modelling of the interleukin-2 T-cell system: a comparative study of approaches based on ordinary and delay direrential equations. Journal of Theoretical Medicine 1997 2 117 128
-
(1997)
Journal of Theoretical Medicine
, vol.2
, pp. 117-128
-
-
Baker, C.T.H.1
Bocharov, G.A.2
Paul, C.A.H.3
-
22
-
-
77955922437
-
Mathematical modeling for keloid formation triggered by virus: Malignant effects and immune system competition
-
2-s2.0-77955922437 10.1142/S021820251100509X
-
Bianca C., Mathematical modeling for keloid formation triggered by virus: malignant effects and immune system competition. Mathematical Models and Methods in Applied Sciences 2011 21 2 389 419 2-s2.0-77955922437 10.1142/S021820251100509X
-
(2011)
Mathematical Models and Methods in Applied Sciences
, vol.21
, Issue.2
, pp. 389-419
-
-
Bianca, C.1
-
23
-
-
65549157113
-
ImmunoGrid, an integrative environment for large-scale simulation of the immune system for vaccine discovery, design and optimization
-
2-s2.0-65549157113 10.1093/bib/bbp014
-
Pappalardo F., Halling-Brown M. D., Rapin N., Zhang P., Alemani D., Emerson A., Paci P., Duroux P., Pennisi M., Palladini A., Miotto O., Churchill D., Rossi E., Shepherd A. J., Moss D. S., Castiglione F., Bernaschi M., Lefranc M. P., Brunak S., Motta S., Lollini P. L., Basford K. E., Brusic V., ImmunoGrid, an integrative environment for large-scale simulation of the immune system for vaccine discovery, design and optimization. Briefings in Bioinformatics 2009 10 3 330 340 2-s2.0-65549157113 10.1093/bib/bbp014
-
(2009)
Briefings in Bioinformatics
, vol.10
, Issue.3
, pp. 330-340
-
-
Pappalardo, F.1
Halling-Brown, M.D.2
Rapin, N.3
Zhang, P.4
Alemani, D.5
Emerson, A.6
Paci, P.7
Duroux, P.8
Pennisi, M.9
Palladini, A.10
Miotto, O.11
Churchill, D.12
Rossi, E.13
Shepherd, A.J.14
Moss, D.S.15
Castiglione, F.16
Bernaschi, M.17
Lefranc, M.P.18
Brunak, S.19
Motta, S.20
Lollini, P.L.21
Basford, K.E.22
Brusic, V.23
more..
-
24
-
-
84856551482
-
The triplex vaccine effects in mammary carcinoma: A nonlinear model in tune with SimTriplex
-
Bianca C., Pennisi M., The triplex vaccine effects in mammary carcinoma: a nonlinear model in tune with SimTriplex. Nonlinear Analysis: Real World Applications 2012 13 1913 1940
-
(2012)
Nonlinear Analysis: Real World Applications
, vol.13
, pp. 1913-1940
-
-
Bianca, C.1
Pennisi, M.2
-
25
-
-
20844453250
-
Modeling and simulation of cancer immunoprevention vaccine
-
DOI 10.1093/bioinformatics/bti426
-
Pappalardo F., Lollini P. L., Castiglione F., Motta S., Modeling and simulation of cancer immunoprevention vaccine. Bioinformatics 2005 21 12 2891 2897 2-s2.0-20844453250 10.1093/bioinformatics/bti426 (Pubitemid 40862289)
-
(2005)
Bioinformatics
, vol.21
, Issue.12
, pp. 2891-2897
-
-
Pappalardo, F.1
Lollini, P.-L.2
Castiglione, F.3
Motta, S.4
-
26
-
-
48249129088
-
Optimal vaccination schedules using simulated annealing
-
2-s2.0-48249129088 10.1093/bioinformatics/btn260
-
Pennisi M., Catanuto R., Pappalardo F., Motta S., Optimal vaccination schedules using simulated annealing. Bioinformatics 2008 24 15 1740 1742 2-s2.0-48249129088 10.1093/bioinformatics/btn260
-
(2008)
Bioinformatics
, vol.24
, Issue.15
, pp. 1740-1742
-
-
Pennisi, M.1
Catanuto, R.2
Pappalardo, F.3
Motta, S.4
-
27
-
-
81255134467
-
MULTIPRED2: A computational system for large-scale identification of peptides predicted to bind to HLA supertypes and alleles
-
2-s2.0-78651427816 10.1016/j.jim.2010.11.009
-
Zhang G. L., DeLuca D. S., Keskin D. B., Chitkushev L., Zlateva T., Lund O., Reinherz E. L., Brusic V., MULTIPRED2: a computational system for large-scale identification of peptides predicted to bind to HLA supertypes and alleles. Journal of Immunological Methods 2011 374 12 53 61 2-s2.0-78651427816 10.1016/j.jim.2010.11.009
-
(2011)
Journal of Immunological Methods
, vol.374
, Issue.12
, pp. 53-61
-
-
Zhang, G.L.1
Deluca, D.S.2
Keskin, D.B.3
Chitkushev, L.4
Zlateva, T.5
Lund, O.6
Reinherz, E.L.7
Brusic, V.8
-
28
-
-
67649311850
-
Computational simulations of the immune system for personalized medicine: State of the art and challenges
-
2-s2.0-67649311850
-
Pappalardo F., Zhang P., Halling-Brown M., Basford K., Scalia A., Shepherd A., Moss D., Motta S., Brusic V., Computational simulations of the immune system for personalized medicine: state of the art and challenges. Current Pharmacogenomics and Personalized Medicine 2008 6 4 260 271 2-s2.0-67649311850
-
(2008)
Current Pharmacogenomics and Personalized Medicine
, vol.6
, Issue.4
, pp. 260-271
-
-
Pappalardo, F.1
Zhang, P.2
Halling-Brown, M.3
Basford, K.4
Scalia, A.5
Shepherd, A.6
Moss, D.7
Motta, S.8
Brusic, V.9
-
29
-
-
22544467432
-
Molecular basis of peptide recognition by the TCR: Affinity differences calculated using large scale computing
-
Wan S., Coveney P. V., Flower D. R., Molecular basis of peptide recognition by the TCR: affinity differences calculated using large scale computing. Journal of Immunology 2005 175 3 1715 1723 2-s2.0-22544467432 (Pubitemid 41023075)
-
(2005)
Journal of Immunology
, vol.175
, Issue.3
, pp. 1715-1723
-
-
Wan, S.1
Coveney, P.V.2
Flower, D.R.3
-
30
-
-
5044232231
-
2 domain in peptide bound and free states: A molecular dynamics simulation study
-
DOI 10.1529/biophysj.104.044743
-
Zacharias M., Springer S., Conformational flexibility of the MHC Class I α 1- α 2 domain in peptide bound and free states: a molecular dynamics simulation study. Biophysical Journal 2004 87 4 2203 2214 2-s2.0-5044232231 10.1529/biophysj.104.044743 (Pubitemid 41071323)
-
(2004)
Biophysical Journal
, vol.87
, Issue.4
, pp. 2203-2214
-
-
Zacharias, M.1
Springer, S.2
-
31
-
-
64149087447
-
3-Layer-based analysis of peptide-MHC interaction: In silico prediction, peptide binding affinity and T cell activation in a relevant allergen-specific model
-
2-s2.0-64149087447 10.1016/j.molimm.2009.01.009
-
Knapp B., Omasits U., Bohle B., Maillere B., Ebner C., Schreiner W., Jahn-Schmid B., 3-Layer-based analysis of peptide-MHC interaction: in silico prediction, peptide binding affinity and T cell activation in a relevant allergen-specific model. Molecular Immunology 2009 46 8-9 1839 1844 2-s2.0-64149087447 10.1016/j.molimm.2009.01.009
-
(2009)
Molecular Immunology
, vol.46
, Issue.8-9
, pp. 1839-1844
-
-
Knapp, B.1
Omasits, U.2
Bohle, B.3
Maillere, B.4
Ebner, C.5
Schreiner, W.6
Jahn-Schmid, B.7
-
32
-
-
77955342515
-
A comparative approach linking molecular dynamics of altered peptide ligands and MHC with in Vivo immune responses
-
2-s2.0-77955342515 10.1371/journal.pone.0011653 e11653
-
Knapp B., Omasits U., Schreiner W., Epstein M. M., A comparative approach linking molecular dynamics of altered peptide ligands and MHC with In Vivo immune responses. PLoS ONE 2010 5 7 2-s2.0-77955342515 10.1371/journal.pone. 0011653 e11653
-
(2010)
PLoS ONE
, vol.5
, Issue.7
-
-
Knapp, B.1
Omasits, U.2
Schreiner, W.3
Epstein, M.M.4
-
33
-
-
77957967793
-
Automated sampling assessment for molecular simulations using the effective sample size
-
2-s2.0-77957967793 10.1021/ct1002384
-
Zhang X., Bhatt D., Zuckerman D. M., Automated sampling assessment for molecular simulations using the effective sample size. Journal of Chemical Theory and Computation 2010 6 10 3048 3057 2-s2.0-77957967793 10.1021/ct1002384
-
(2010)
Journal of Chemical Theory and Computation
, vol.6
, Issue.10
, pp. 3048-3057
-
-
Zhang, X.1
Bhatt, D.2
Zuckerman, D.M.3
-
34
-
-
0035276713
-
VRONI: An engineering approach to the reliable and efficient computation of Voronoi diagrams of points and line segments
-
DOI 10.1016/S0925-7721(01)00003-7, PII S0925772101000037
-
Held M., VRONI: an engineering approach to the reliable and efficient computation of Voronoi diagrams of points and line segments. Computational Geometry 2001 18 2 95 123 2-s2.0-0035276713 10.1016/S0925-7721(01)00003-7 (Pubitemid 33678406)
-
(2001)
Computational Geometry: Theory and Applications
, vol.18
, Issue.2
, pp. 95-123
-
-
Held, M.1
-
35
-
-
0003760944
-
-
2nd Chichester John Wiley & Sons
-
Okabe A., Boots B., Sugihara K., Chiu S. N., Kendall D. G., Spatial Tessellations: Concepts and Applications of Voronoi Diagrams 2000 2nd Chichester John Wiley & Sons
-
(2000)
Spatial Tessellations: Concepts and Applications of Voronoi Diagrams
-
-
Okabe, A.1
Boots, B.2
Sugihara, K.3
Chiu, S.N.4
Kendall, D.G.5
-
36
-
-
0003657590
-
-
2nd Reading, Mass, USA Addison-Wesley Seminumerical Algorithms
-
Knuth D., The Art of Computer Programming 1989 2 2nd Reading, Mass, USA Addison-Wesley Seminumerical Algorithms
-
(1989)
The Art of Computer Programming
, vol.2
-
-
Knuth, D.1
-
37
-
-
0000577041
-
Large-amplitude nonlinear motions in proteins
-
2-s2.0-0000577041 10.1103/PhysRevLett.68.2696
-
García A. E., Large-amplitude nonlinear motions in proteins. Physical Review Letters 1992 68 17 2696 2699 2-s2.0-0000577041 10.1103/PhysRevLett.68.2696
-
(1992)
Physical Review Letters
, vol.68
, Issue.17
, pp. 2696-2699
-
-
García, A.E.1
-
38
-
-
79961132625
-
Is an intuitive convergence definition of molecular dynamics simulations solely based on the root mean square deviation possible?
-
2-s2.0-79961132625 10.1089/cmb.2010.0237
-
Knapp B., Frantal S., Cibena M., Schreiner W., Bauer P., Is an intuitive convergence definition of molecular dynamics simulations solely based on the root mean square deviation possible? Journal of Computational Biology 2011 18 8 997 1005 2-s2.0-79961132625 10.1089/cmb.2010.0237
-
(2011)
Journal of Computational Biology
, vol.18
, Issue.8
, pp. 997-1005
-
-
Knapp, B.1
Frantal, S.2
Cibena, M.3
Schreiner, W.4
Bauer, P.5
-
39
-
-
69349101503
-
Chapter 2 quantifying uncertainty and sampling quality in biomolecular simulations
-
2-s2.0-69349101503 10.1016/S1574-1400(09)00502-7
-
Grossfield A., Zuckerman D. M., Chapter 2 quantifying uncertainty and sampling quality in biomolecular simulations. Annual Reports in Computational Chemistry 2009 5 23 48 2-s2.0-69349101503 10.1016/S1574-1400(09)00502-7
-
(2009)
Annual Reports in Computational Chemistry
, vol.5
, pp. 23-48
-
-
Grossfield, A.1
Zuckerman, D.M.2
-
40
-
-
36549102647
-
Error estimates on averages of correlated data
-
2-s2.0-36549102647
-
Flyvbjerg H., Petersen H. G., Error estimates on averages of correlated data. The Journal of Chemical Physics 1989 91 1 461 466 2-s2.0-36549102647
-
(1989)
The Journal of Chemical Physics
, vol.91
, Issue.1
, pp. 461-466
-
-
Flyvbjerg, H.1
Petersen, H.G.2
-
41
-
-
0033954256
-
The Protein Data Bank
-
Berman H. M., Westbrook J., Feng Z., Gilliland G., Bhat T. N., Weissig H., Shindyalov I. N., Bourne P. E., The protein data bank. Nucleic Acids Research 2000 28 1 235 242 2-s2.0-0033954256 (Pubitemid 30047768)
-
(2000)
Nucleic Acids Research
, vol.28
, Issue.1
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
42
-
-
0037240790
-
A structural basis for the selection of Dominant αβ T cell receptors in antiviral immunity
-
DOI 10.1016/S1074-7613(02)00513-7
-
Kjer-Nielsen L., Clements C. S., Purcell A. W., Brooks A. G., Whisstock J. C., Burrows S. R., McCluskey J., Rossjohn J., A structural basis for the selection of Dominant α β T cell receptors in antiviral immunity. Immunity 2003 18 1 53 64 2-s2.0-0037240790 10.1016/S1074-7613(02)00513-7 (Pubitemid 36120687)
-
(2003)
Immunity
, vol.18
, Issue.1
, pp. 53-64
-
-
Kjer-Nielsen, L.1
Clements, C.S.2
Purcell, A.W.3
Brooks, A.G.4
Whisstock, J.C.5
Burrows, S.R.6
McCluskey, J.7
Rossjohn, J.8
-
43
-
-
0042511005
-
A graph-theory algorithm for rapid protein side-chain prediction
-
DOI 10.1110/ps.03154503
-
Canutescu A. A., Shelenkov A. A., Dunbrack R. L., A graph-theory algorithm for rapid protein side-chain prediction. Protein Science 2003 12 9 2001 2014 2-s2.0-0042511005 10.1110/ps.03154503 (Pubitemid 37022822)
-
(2003)
Protein Science
, vol.12
, Issue.9
, pp. 2001-2014
-
-
Canutescu, A.A.1
Shelenkov, A.A.2
Dunbrack Jr., R.L.3
-
44
-
-
44349194048
-
Side chain substitution benchmark for peptide/MHC interaction
-
DOI 10.1110/ps.073402508
-
Knapp B., Omasits U., Schreiner W., Side chain substitution benchmark for peptide/MHC interaction. Protein Science 2008 17 6 977 982 2-s2.0-44349194048 10.1110/ps.073402508 (Pubitemid 351749203)
-
(2008)
Protein Science
, vol.17
, Issue.6
, pp. 977-982
-
-
Knapp, B.1
Omasits, U.2
Schreiner, W.3
-
45
-
-
65049084476
-
A critical cross-validation of high throughput structural binding prediction methods for pMHC
-
2-s2.0-65049084476 10.1007/s10822-009-9259-2
-
Knapp B., Omasits U., Frantal S., Schreiner W., A critical cross-validation of high throughput structural binding prediction methods for pMHC. Journal of Computer-Aided Molecular Design 2009 23 5 301 307 2-s2.0-65049084476 10.1007/s10822-009-9259-2
-
(2009)
Journal of Computer-Aided Molecular Design
, vol.23
, Issue.5
, pp. 301-307
-
-
Knapp, B.1
Omasits, U.2
Frantal, S.3
Schreiner, W.4
-
46
-
-
0036849685
-
The 1.5 Å crystal structure of a highly selected antiviral T cell receptor provides evidence for a structural basis of immunodominance
-
DOI 10.1016/S0969-2126(02)00878-X, PII S096921260200878X
-
Kjer-Nielsen L., Clements C. S., Brooks A. G., Purcell A. W., McCluskey J., Rossjohn J., The 1.5 Å crystal structure of a highly selected antiviral T cell receptor provides evidence for a structural basis of immunodominance. Structure 2002 10 11 1521 1532 2-s2.0-0036849685 10.1016/S0969-2126(02)00878-X (Pubitemid 35351492)
-
(2002)
Structure
, vol.10
, Issue.11
, pp. 1521-1532
-
-
Kjer-Nielsen, L.1
Clements, C.S.2
Brooks, A.G.3
Purcell, A.W.4
McCluskey, J.5
Rossjohn, J.6
-
47
-
-
0036839356
-
The structure of HLA-B8 complexed to an immunodominant viral determinant: Peptide-induced conformational changes and a mode of MHC class I dimerization
-
Kjer-Nielsen L., Clements C. S., Brooks A. G., Purcell A. W., Fontes M. R., McCluskey J., Rossjohn J., The structure of HLA-B8 complexed to an immunodominant viral determinant: peptide-induced conformational changes and a mode of MHC class I dimerization. Journal of Immunology 2002 169 9 5153 5160 2-s2.0-0036839356 (Pubitemid 35217185)
-
(2002)
Journal of Immunology
, vol.169
, Issue.9
, pp. 5153-5160
-
-
Kjer-Nielsen, L.1
Clements, C.S.2
Brooks, A.G.3
Purcell, A.W.4
Fontes, M.R.5
McCluskey, J.6
Rossjohn, J.7
-
49
-
-
46249092554
-
GRGMACS 4: Algorithms for highly efficient, load-balanced, and scalable molecular simulation
-
2-s2.0-46249092554 10.1021/ct700301q
-
Hess B., Kutzner C., van der Spoel D., Lindahl E., GRGMACS 4: algorithms for highly efficient, load-balanced, and scalable molecular simulation. Journal of Chemical Theory and Computation 2008 4 3 435 447 2-s2.0-46249092554 10.1021/ct700301q
-
(2008)
Journal of Chemical Theory and Computation
, vol.4
, Issue.3
, pp. 435-447
-
-
Hess, B.1
Kutzner, C.2
Van Der Spoel, D.3
Lindahl, E.4
-
50
-
-
4444282928
-
A biomolecular force field based on the free enthalpy of hydration and solvation: The GROMOS force-field parameter sets 53A5 and 53A6
-
2-s2.0-4444282928 10.1002/jcc.20090
-
Oostenbrink C., Villa A., Mark A. E., Van Gunsteren W. F., A biomolecular force field based on the free enthalpy of hydration and solvation: the GROMOS force-field parameter sets 53A5 and 53A6. Journal of Computational Chemistry 2004 25 13 1656 1676 2-s2.0-4444282928 10.1002/jcc.20090
-
(2004)
Journal of Computational Chemistry
, vol.25
, Issue.13
, pp. 1656-1676
-
-
Oostenbrink, C.1
Villa, A.2
Mark, A.E.3
Van Gunsteren, W.F.4
-
51
-
-
49649086640
-
Analysis of key parameters for molecular dynamics of pMHC molecules
-
2-s2.0-49649086640 10.1080/08927020802256298
-
Omasits U., Knapp B., Neumann M., Steinhauser O., Stockinger H., Kobler R., Schreiner W., Analysis of key parameters for molecular dynamics of pMHC molecules. Molecular Simulation 2008 34 8 781 793 2-s2.0-49649086640 10.1080/08927020802256298
-
(2008)
Molecular Simulation
, vol.34
, Issue.8
, pp. 781-793
-
-
Omasits, U.1
Knapp, B.2
Neumann, M.3
Steinhauser, O.4
Stockinger, H.5
Kobler, R.6
Schreiner, W.7
-
52
-
-
0003043542
-
The possible effects of the aggregation of the molecules of haemoglobin on its dissociation curves
-
Hill A. V., The possible effects of the aggregation of the molecules of haemoglobin on its dissociation curves. Journal of Physiology 1910 40, supplement 4 7
-
(1910)
Journal of Physiology
, vol.40
, pp. 4-7
-
-
Hill, A.V.1
-
53
-
-
10344261477
-
Conformational sampling and dynamics of membrane proteins from 10-nanosecond computer simulations
-
DOI 10.1002/prot.20257
-
Faraldo-Gómez J. D., Forrest L. R., Baaden M., Bond P. J., Domene C., Patargias G., Cuthbertson J., Sansom M. S. P., Conformational sampling and dynamics of membrane proteins from 10-nanosecond computer simulations. Proteins 2004 57 4 783 791 2-s2.0-10344261477 10.1002/prot.20257 (Pubitemid 39626999)
-
(2004)
Proteins: Structure, Function and Genetics
, vol.57
, Issue.4
, pp. 783-791
-
-
Faraldo-Gomez, J.D.1
Forrest, L.R.2
Baaden, M.3
Bond, P.J.4
Domene, C.5
Patargias, G.6
Cuthbertson, J.7
Sansom, M.S.P.8
-
54
-
-
33947398571
-
Use of the weighted histogram analysis method for the analysis of simulated and parallel tempering simulations
-
2-s2.0-33947398571 10.1021/ct0502864
-
Chodera J. D., Swope W. C., Pitera J. W., Seok C., Dill K. A., Use of the weighted histogram analysis method for the analysis of simulated and parallel tempering simulations. Journal of Chemical Theory and Computation 2007 3 1 26 41 2-s2.0-33947398571 10.1021/ct0502864
-
(2007)
Journal of Chemical Theory and Computation
, vol.3
, Issue.1
, pp. 26-41
-
-
Chodera, J.D.1
Swope, W.C.2
Pitera, J.W.3
Seok, C.4
Dill, K.A.5
-
55
-
-
0037103003
-
Assessing equilibration and convergence in biomolecular simulations
-
DOI 10.1002/prot.10144
-
Smith L. J., Daura X., Van Gunsteren W. F., Assessing equilibration and convergence in biomolecular simulations. Proteins 2002 48 3 487 496 2-s2.0-0037103003 10.1002/prot.10144 (Pubitemid 34810414)
-
(2002)
Proteins: Structure, Function and Genetics
, vol.48
, Issue.3
, pp. 487-496
-
-
Smith, L.J.1
Daura, X.2
Van Gunsteren, W.F.3
|