-
1
-
-
0009913368
-
UNICORE: Uniform Access to Supercomputing as an Element of Electronic Commerce
-
Almond, J. and Snelling, D. (1999) UNICORE: Uniform Access to Supercomputing as an Element of Electronic Commerce. Future Gen. Comput. Syst. 613, 1-10.
-
(1999)
Future Gen. Comput. Syst
, vol.613
, pp. 1-10
-
-
Almond, J.1
Snelling, D.2
-
2
-
-
0037459917
-
Models of CD8+ responses: 1. What is the antigenin-dependent proliferation program
-
Antia, R.; Bergstrom, C. T.; Pilyugin, S. S.; Kaech, S. M. and Ahmed, R. (2003) Models of CD8+ responses: 1. What is the antigenin-dependent proliferation program. J. Theor. Biol. 221, 585-598.
-
(2003)
J. Theor. Biol
, vol.221
, pp. 585-598
-
-
Antia, R.1
Bergstrom, C.T.2
Pilyugin, S.S.3
Kaech, S.M.4
Ahmed, R.5
-
3
-
-
0014958177
-
Mathematical Model of Clonal Selection and Antibody Production
-
Bell, G. I. (1970) Mathematical Model of Clonal Selection and Antibody Production. Nature 228, 739-744.
-
(1970)
Nature
, vol.228
, pp. 739-744
-
-
Bell, G.I.1
-
4
-
-
0034861860
-
Design and Implementation of an Immune System Aimulator
-
Bernaschi, M. and Castiglione, F. (2001) Design and Implementation of an Immune System Aimulator. Comput. Biol. Med. 31, 303-331.
-
(2001)
Comput. Biol. Med
, vol.31
, pp. 303-331
-
-
Bernaschi, M.1
Castiglione, F.2
-
6
-
-
0032493166
-
Modelling the Dynamics of LCMV Infection in Mice: Conventional and Exhaustive CTL Responses
-
Bocharov, G. A. (1998) Modelling the Dynamics of LCMV Infection in Mice: Conventional and Exhaustive CTL Responses. J. Theor. Biol. 192(3), 283-308.
-
(1998)
J. Theor. Biol
, vol.192
, Issue.3
, pp. 283-308
-
-
Bocharov, G.A.1
-
7
-
-
26444499469
-
Predictive Vaccinology: Optimisation of Predictions Using Support Vector Machine Classifiers
-
Bozic, I.; Zhang, G. and Brusic, V. (2005) Predictive Vaccinology: Optimisation of Predictions Using Support Vector Machine Classifiers. Lect. Notes Comput. Sci. 3578, 375-381.
-
(2005)
Lect. Notes Comput. Sci
, vol.3578
, pp. 375-381
-
-
Bozic, I.1
Zhang, G.2
Brusic, V.3
-
8
-
-
4544372674
-
The Changing Field of Vaccine Development in the Genomics Era
-
Brusic, V. and August, J. T. (2004) The Changing Field of Vaccine Development in the Genomics Era. Pharmacogenomics 5, 597-600.
-
(2004)
Pharmacogenomics
, vol.5
, pp. 597-600
-
-
Brusic, V.1
August, J.T.2
-
9
-
-
7944223046
-
Computational Methods for Prediction of T-cell Epitopes - A Framework for Modelling, Testing, and Applications
-
Brusic, V.; Bajic, B. B. and Petrovsky, N. (2004) Computational Methods for Prediction of T-cell Epitopes - A Framework for Modelling, Testing, and Applications. Methods 34, 436-443.
-
(2004)
Methods
, vol.34
, pp. 436-443
-
-
Brusic, V.1
Bajic, B.B.2
Petrovsky, N.3
-
10
-
-
11344264868
-
Bioinformatics Tools for Identifying T-cell Epitopes
-
Brusic, V. and Flower, D. R. (2004) Bioinformatics Tools for Identifying T-cell Epitopes. Drug Discov. Today Biosilico. 2(1), 18-23.
-
(2004)
Drug Discov. Today Biosilico
, vol.2
, Issue.1
, pp. 18-23
-
-
Brusic, V.1
Flower, D.R.2
-
11
-
-
33947732714
-
Proteome Informatics for Cancer Research: From Molecules to Clinic
-
Brusic, V.; Marina, O.; Wu, C. J. and Reinherz, E. L. (2007) Proteome Informatics for Cancer Research: From Molecules to Clinic. Proteomics 7(6), 976-991.
-
(2007)
Proteomics
, vol.7
, Issue.6
, pp. 976-991
-
-
Brusic, V.1
Marina, O.2
Wu, C.J.3
Reinherz, E.L.4
-
12
-
-
0035989336
-
Computational immunology: The coming of age
-
Petrovsky, N. and Brusic, V. (2002) Computational immunology: The coming of age. Immunol. Cell Biol. 80(3), 248-254.
-
(2002)
Immunol. Cell Biol
, vol.80
, Issue.3
, pp. 248-254
-
-
Petrovsky, N.1
Brusic, V.2
-
13
-
-
0004694187
-
Knowledge Discovery and Data Mining in Biological Databases
-
Brusic, V. and Zeleznikow, J. (1999) Knowledge Discovery and Data Mining in Biological Databases. Knowl. Eng. Rev. 14, 257-277.
-
(1999)
Knowl. Eng. Rev
, vol.14
, pp. 257-277
-
-
Brusic, V.1
Zeleznikow, J.2
-
14
-
-
21344466799
-
Automated Generation and Evaluation of Specific MHC Binding Predictive Tools: ARB Matrix Applications
-
Bui, H. H.; Sidney, J.; Peters, B.; Sathiamurthy, M.; Sinichi, A.; Purton, K. A.; Mothé, B. R.; Chisari, F. V.; Watkins, D. I. and Sette, A. (2005) Automated Generation and Evaluation of Specific MHC Binding Predictive Tools: ARB Matrix Applications. Immunogenetics 57, 304-314.
-
(2005)
Immunogenetics
, vol.57
, pp. 304-314
-
-
Bui, H.H.1
Sidney, J.2
Peters, B.3
Sathiamurthy, M.4
Sinichi, A.5
Purton, K.A.6
Mothé, B.R.7
Chisari, F.V.8
Watkins, D.I.9
Sette, A.10
-
15
-
-
10744222046
-
Sensitive Quantitative Predictions of Peptide-MHC Binding by A "Query by Committee" Artificial Neural Network Approach
-
Buus, S.; Lauemoller, S. L.; Worning, P.; Kesmir, C. and Frimurer, T. (2003) Sensitive Quantitative Predictions of Peptide-MHC Binding by A "Query by Committee" Artificial Neural Network Approach. Tissue Antigens 62, 378-384.
-
(2003)
Tissue Antigens
, vol.62
, pp. 378-384
-
-
Buus, S.1
Lauemoller, S.L.2
Worning, P.3
Kesmir, C.4
Frimurer, T.5
-
16
-
-
0031503374
-
Simulating the Immune Response on A Distributed Parallel Computer
-
Castiglione, F.; Bernaschi, M. and Succi, S. (1997) Simulating the Immune Response on A Distributed Parallel Computer. Int. J. Modern Phys. C. 8(3), 527-545.
-
(1997)
Int. J. Modern Phys. C
, vol.8
, Issue.3
, pp. 527-545
-
-
Castiglione, F.1
Bernaschi, M.2
Succi, S.3
-
17
-
-
34447501892
-
Cancer immunotherapy, mathematical modeling and optimal control
-
Castiglione, F. and Piccoli, B. (2007) Cancer immunotherapy, mathematical modeling and optimal control. J. Theor. Biol. 247(4), 723-732.
-
(2007)
J. Theor. Biol
, vol.247
, Issue.4
, pp. 723-732
-
-
Castiglione, F.1
Piccoli, B.2
-
18
-
-
0026556477
-
A Computer Model of Cellular Interactions in the Immune System
-
Celada, F. and Seiden, P. (1992) A Computer Model of Cellular Interactions in the Immune System. Immunol. Today 13(2), 56-62.
-
(1992)
Immunol. Today
, vol.13
, Issue.2
, pp. 56-62
-
-
Celada, F.1
Seiden, P.2
-
19
-
-
0026459891
-
A Model of Simulating Cognate Recognition and Response in Immune System
-
Celada, F. and Seiden, P. (1992) A Model of Simulating Cognate Recognition and Response in Immune System. J. Theor. Biol. 158, 329-357.
-
(1992)
J. Theor. Biol
, vol.158
, pp. 329-357
-
-
Celada, F.1
Seiden, P.2
-
20
-
-
0030026711
-
Affinity Maturation and Hypermutation in a Simulation of the Humoral Response
-
Celada, F. and Seiden, P. E. (1996) Affinity Maturation and Hypermutation in a Simulation of the Humoral Response. Eur. J. Immunol. 26, 1350-1358.
-
(1996)
Eur. J. Immunol
, vol.26
, pp. 1350-1358
-
-
Celada, F.1
Seiden, P.E.2
-
21
-
-
0031557690
-
Mathematical Model of Progressive Renal Disease
-
Chaturvedi, P. and Insana, M. F. (1997) Mathematical Model of Progressive Renal Disease. J. Theor. Biol. 185, 357-365.
-
(1997)
J. Theor. Biol
, vol.185
, pp. 357-365
-
-
Chaturvedi, P.1
Insana, M.F.2
-
23
-
-
0024746475
-
Network Regulation of Autoimmunity: An Automation Model
-
Cohen, I. R. and Atlan, H. (1989) Network Regulation of Autoimmunity: An Automation Model. J. Autoimmun. 2(5), 613-625.
-
(1989)
J. Autoimmun
, vol.2
, Issue.5
, pp. 613-625
-
-
Cohen, I.R.1
Atlan, H.2
-
24
-
-
33947260545
-
Modeling immune behavior for experimentalists
-
Cohen I. R. (2007). Modeling immune behavior for experimentalists. Immunol. Rev. 216, 232-236.
-
(2007)
Immunol. Rev
, vol.216
, pp. 232-236
-
-
Cohen, I.R.1
-
25
-
-
0026503407
-
Pattern-formation in One and Two-dimensional Shape-space Models of the Immune System
-
De Boer, R. J.; Segel, L. A. and Perelson, A. S. (1992) Pattern-formation in One and Two-dimensional Shape-space Models of the Immune System. J. Theor. Biol. 155, 295-333.
-
(1992)
J. Theor. Biol
, vol.155
, pp. 295-333
-
-
De Boer, R.J.1
Segel, L.A.2
Perelson, A.S.3
-
26
-
-
37349068567
-
Haematopoietic Stem Cell Transplantation: Can Our Genes Predict Clinical Outcome?
-
Dickinson, A. M.; Harrold, J. L. and Cullup, H. (2007) Haematopoietic Stem Cell Transplantation: Can Our Genes Predict Clinical Outcome? Expert Rev. Mol. Med. 9(29), 1-19.
-
(2007)
Expert Rev. Mol. Med
, vol.9
, Issue.29
, pp. 1-19
-
-
Dickinson, A.M.1
Harrold, J.L.2
Cullup, H.3
-
28
-
-
0028935394
-
The origins of the clonal selection theory of immunity
-
Forsdyke, D. R. (1995) The origins of the clonal selection theory of immunity. FASEB J. 9, 164-166.
-
(1995)
FASEB J
, vol.9
, pp. 164-166
-
-
Forsdyke, D.R.1
-
29
-
-
0032494689
-
Mathematical Model of a Virus-neutralizing Immunglobulin Response
-
Funk, G. A.; Barbour, A. D.; Hengartner, H. and Kalinke, U. (1998) Mathematical Model of a Virus-neutralizing Immunglobulin Response. J. Theor. Biol. 195(1), 41-52.
-
(1998)
J. Theor. Biol
, vol.195
, Issue.1
, pp. 41-52
-
-
Funk, G.A.1
Barbour, A.D.2
Hengartner, H.3
Kalinke, U.4
-
30
-
-
38649118833
-
In Silico Tools for Predicting Peptides Binding to HLA-class II Molecules: More Confusion than Conclusion
-
Gowthaman, U. and Agrewala, J. N. (2008) In Silico Tools for Predicting Peptides Binding to HLA-class II Molecules: More Confusion than Conclusion. J. Proteome Res. 7(1), 154-163.
-
(2008)
J. Proteome Res
, vol.7
, Issue.1
, pp. 154-163
-
-
Gowthaman, U.1
Agrewala, J.N.2
-
31
-
-
25144469490
-
The Pharmacogenetic Impact of Inflammatory Genes on Bladder Cancer Recurrence
-
Gu, J.; Grossman, H. B.; Dinney, C. P. and Wu, X. (2005) The Pharmacogenetic Impact of Inflammatory Genes on Bladder Cancer Recurrence. Pharmacogenomics 6(6), 575-84.
-
(2005)
Pharmacogenomics
, vol.6
, Issue.6
, pp. 575-584
-
-
Gu, J.1
Grossman, H.B.2
Dinney, C.P.3
Wu, X.4
-
33
-
-
0000875292
-
The Natural Selection Theory of Antibody Formation
-
Jerne, N. K. (1955) The Natural Selection Theory of Antibody Formation. Proc. Natl. Acad. Sci. USA. 41, 849-857.
-
(1955)
Proc. Natl. Acad. Sci. USA
, vol.41
, pp. 849-857
-
-
Jerne, N.K.1
-
34
-
-
0015956495
-
Towards A Network Theory of the Immune System
-
Jerne, N. K. (1974) Towards A Network Theory of the Immune System. Ann. Immunol. (Paris) 125C(1-2), 373-389.
-
(1974)
Ann. Immunol. (Paris)
, vol.125 C
, Issue.1-2
, pp. 373-389
-
-
Jerne, N.K.1
-
36
-
-
33646448179
-
Computational Modelling and Simulation of the Immune System
-
Kalita, J. K.; Chandrashekar, K.; Hans, R.; Selvam, P. and Newell, M. K. (2006) Computational Modelling and Simulation of the Immune System. Int. J. Bioinform. Res. Appl. 2(1), 63-88.
-
(2006)
Int. J. Bioinform. Res. Appl
, vol.2
, Issue.1
, pp. 63-88
-
-
Kalita, J.K.1
Chandrashekar, K.2
Hans, R.3
Selvam, P.4
Newell, M.K.5
-
37
-
-
84862674331
-
Overview of Pharmacogenetics
-
Chapter 9, Unit 9, 19
-
Katz, D. A. (2006) Overview of Pharmacogenetics. Curr. Protoc. Hum. Genetics. Chapter 9, Unit 9, 19.
-
(2006)
Curr. Protoc. Hum. Genetics
-
-
Katz, D.A.1
-
38
-
-
0022376616
-
Towards a Logical Analysis of the Immune Response
-
Kaufman, M.; Urbain, J. and Thomas, R. (1985) Towards a Logical Analysis of the Immune Response. J. Theor. Biol. 114(4), 527-561.
-
(1985)
J. Theor. Biol
, vol.114
, Issue.4
, pp. 527-561
-
-
Kaufman, M.1
Urbain, J.2
Thomas, R.3
-
40
-
-
0035822716
-
Toward Quantitative Simulation of Germinal Center Dynamics: Biological and Modeling Insights from Experimental Validation
-
Kleinstein, S. H. and Singh, J. P. (2001) Toward Quantitative Simulation of Germinal Center Dynamics: Biological and Modeling Insights from Experimental Validation. J. Theor. Biol. 211(3), 253-275.
-
(2001)
J. Theor. Biol
, vol.211
, Issue.3
, pp. 253-275
-
-
Kleinstein, S.H.1
Singh, J.P.2
-
41
-
-
0037472450
-
Towards the New Global Vaccinology Era in Prevention and Control of Diseases
-
Kurstak, E. (2003) Towards the New Global Vaccinology Era in Prevention and Control of Diseases. Vaccine 21, 580-581.
-
(2003)
Vaccine
, vol.21
, pp. 580-581
-
-
Kurstak, E.1
-
42
-
-
42449102990
-
Up on the tightrope: Natural killer cell activation and inhibition
-
Lanier, L. L (2008) Up on the tightrope: natural killer cell activation and inhibition. Nat. Immunol. 9(5), 495-502.
-
(2008)
Nat. Immunol
, vol.9
, Issue.5
, pp. 495-502
-
-
Lanier, L.L.1
-
44
-
-
42549105195
-
Evaluation of MHC Class I Peptide Binding Prediction Servers: Applications for Vaccine Research
-
doi:10.1186/1471-2172-9-8
-
Lin, H. H.; Ray, S.; Tongchusak, S.; Reinherz, E. L. and Brusic, V. (2008) Evaluation of MHC Class I Peptide Binding Prediction Servers: Applications for Vaccine Research. BMC Bioinformatics, http://www.biomedcentral.com/1471-2172/9/8. 9(8), doi:10.1186/1471-2172-9-8.
-
(2008)
BMC Bioinformatics
, vol.9
, Issue.8
-
-
Lin, H.H.1
Ray, S.2
Tongchusak, S.3
Reinherz, E.L.4
Brusic, V.5
-
45
-
-
85047687353
-
Cancer Immunoprevention
-
Lollini, P. -L.; De Giovanni, C.; Pannellini, T.; Guido, F. C. and Nanni, F. (2005) Cancer Immunoprevention. Future Oncol. 1(1), 57-66.
-
(2005)
Future Oncol
, vol.1
, Issue.1
, pp. 57-66
-
-
Lollini, P.-L.1
De Giovanni, C.2
Pannellini, T.3
Guido, F.C.4
Nanni, F.5
-
46
-
-
33748126338
-
Discovery of Cancer Vaccination Protocols with Genetic Algorithm Driving an Agent Based Simulator
-
Lollini, P. -L.; Motta, S. and Pappalardo, F. (2006) Discovery of Cancer Vaccination Protocols with Genetic Algorithm Driving an Agent Based Simulator. BMC Bioinformatics, https://www.biomedcentral.com/ 1471-2105/7/352.
-
(2006)
BMC Bioinformatics
-
-
Lollini, P.-L.1
Motta, S.2
Pappalardo, F.3
-
47
-
-
33947283687
-
The Evolution of Mathematical Immunology
-
Louzoun, Y. (2007) The Evolution of Mathematical Immunology. Immunol. Rev. 216, 9-20.
-
(2007)
Immunol. Rev
, vol.216
, pp. 9-20
-
-
Louzoun, Y.1
-
48
-
-
36949034073
-
Modeling the Adaptive Immune System: Predictions and Simulations
-
Lundegaard, C.; Lund, O.; Kesmir, C.; Brunak, S. and Nielsen, M. (2007) Modeling the Adaptive Immune System: Predictions and Simulations. Bioinformatics 23(24), 3265-3275.
-
(2007)
Bioinformatics
, vol.23
, Issue.24
, pp. 3265-3275
-
-
Lundegaard, C.1
Lund, O.2
Kesmir, C.3
Brunak, S.4
Nielsen, M.5
-
49
-
-
0003232570
-
Cellular Automata and Modeling of Complex Physical Systems
-
Bidaux, R, Ed, Springer
-
Manneville, P.; Boccara, N.; and Vichniac, G. Y. (1989) In: Cellular Automata and Modeling of Complex Physical Systems; Bidaux, R. (Ed); Springer: Verlag Series in Physics, 46.
-
(1989)
Verlag Series in Physics
, vol.46
-
-
Manneville, P.1
Boccara, N.2
Vichniac, G.Y.3
-
50
-
-
33947191941
-
Cellular Automata-based Modeling Program: Synthetic Immune System
-
Mata, J. and Cohn, M. (2007) Cellular Automata-based Modeling Program: Synthetic Immune System. Immunol. Rev. 216, 198-212.
-
(2007)
Immunol. Rev
, vol.216
, pp. 198-212
-
-
Mata, J.1
Cohn, M.2
-
51
-
-
0009622472
-
The Immune System as a Complex System: Description and Simulation of the Interactions of its Constituents
-
PhD thesis, Physics Department. Hamburg, University of Hamburg
-
Meier-Schellersheim, M. (2001). "The Immune System as a Complex System: Description and Simulation of the Interactions of its Constituents". PhD thesis, Physics Department. Hamburg, University of Hamburg.
-
(2001)
-
-
Meier-Schellersheim, M.1
-
52
-
-
33746595848
-
Key Role of Local Regulation in Chemosensing Revealed by a New Molecular Interaction-based Modeling Method
-
Meier-Schellersheim, M.; Xu, X.; Angermann, B.; Kunkel, E. J.; Jin, T. and Germain, R. N. (2006) Key Role of Local Regulation in Chemosensing Revealed by a New Molecular Interaction-based Modeling Method. PLoS Comput. Biol. 2, 710-724.
-
(2006)
PLoS Comput. Biol
, vol.2
, pp. 710-724
-
-
Meier-Schellersheim, M.1
Xu, X.2
Angermann, B.3
Kunkel, E.J.4
Jin, T.5
Germain, R.N.6
-
54
-
-
33947131802
-
New insights into mathematical modeling of the immune system
-
Morel, P. A.; Ta'asan, S.; Morel, B. F.; Kirschner, D. E. and Flynn, J. L. (2006). New insights into mathematical modeling of the immune system. Immunol. Res. 36(1-3), 157-165.
-
(2006)
Immunol. Res
, vol.36
, Issue.1-3
, pp. 157-165
-
-
Morel, P.A.1
Ta'asan, S.2
Morel, B.F.3
Kirschner, D.E.4
Flynn, J.L.5
-
55
-
-
33845689498
-
Mathematical Modelling of the Immune System
-
Modelling in Molecular Biology; Ciobanu, G. and Rozenberg, G, eds, Springer: pp
-
Motta, S. and Brusic, V. (2004) Mathematical Modelling of the Immune System. In Modelling in Molecular Biology; Ciobanu, G. and Rozenberg, G. (eds.), Natural Computing Series, Springer: pp. 193-218.
-
(2004)
Natural Computing Series
, pp. 193-218
-
-
Motta, S.1
Brusic, V.2
-
56
-
-
33748159972
-
Modelling Vaccination Schedules for a Cancer Immunoprevention Vaccine
-
Motta, S.; Castiglione, F.; Lollini, P. -L. and Pappalardo, F. (2005) Modelling Vaccination Schedules for a Cancer Immunoprevention Vaccine. Immun. Res. 1(5), 5.
-
(2005)
Immun. Res
, vol.1
, Issue.5
, pp. 5
-
-
Motta, S.1
Castiglione, F.2
Lollini, P.-L.3
Pappalardo, F.4
-
57
-
-
33746132748
-
A Consensus Epitope Prediction Approach Identifies the Breadth of Murine TCD8+ - cell Responses to Vaccinia Virus
-
Moutaftsi, M.; Peters, B.; Pasquetto, V.; Tscharke, D. C.; Sidney, J.; Bui, H. -H.; Grey, H. and Sette, A. (2006) A Consensus Epitope Prediction Approach Identifies the Breadth of Murine TCD8+ - cell Responses to Vaccinia Virus. Nat. Biotechnol. 24(7), 817-819.
-
(2006)
Nat. Biotechnol
, vol.24
, Issue.7
, pp. 817-819
-
-
Moutaftsi, M.1
Peters, B.2
Pasquetto, V.3
Tscharke, D.C.4
Sidney, J.5
Bui, H.-H.6
Grey, H.7
Sette, A.8
-
58
-
-
34249042613
-
The Pan-genome: Towards a Knowledge-based Discovery of Novel Targets for Vaccines and Antibacterials
-
Muzzi, A.; Masignani, V. and Rappuoli, R. (2007) The Pan-genome: Towards a Knowledge-based Discovery of Novel Targets for Vaccines and Antibacterials. Drug Discov. Today 12(11-12), 429-439.
-
(2007)
Drug Discov. Today
, vol.12
, Issue.11-12
, pp. 429-439
-
-
Muzzi, A.1
Masignani, V.2
Rappuoli, R.3
-
59
-
-
0005736395
-
Control of the Immune Response by a Threshold Automata Model on A Lattice
-
Neumann, A. U. (1989) Control of the Immune Response by a Threshold Automata Model on A Lattice. Phys. Stat. Mechan. Appl. 162, 1-19.
-
(1989)
Phys. Stat. Mechan. Appl
, vol.162
, pp. 1-19
-
-
Neumann, A.U.1
-
60
-
-
2442499729
-
Improved Prediction of MHC Class I and Class II Epitopes using a Novel Gibbs Sampling Approach
-
Nielsen, M.; Lundegaard, C.; Worning, P.; Hvid, C. S.; Lamberth, K.; Buus, S.; Brunak, S. and Lund, O. (2004) Improved Prediction of MHC Class I and Class II Epitopes using a Novel Gibbs Sampling Approach. Bioinformatics 20(9), 1388-1397.
-
(2004)
Bioinformatics
, vol.20
, Issue.9
, pp. 1388-1397
-
-
Nielsen, M.1
Lundegaard, C.2
Worning, P.3
Hvid, C.S.4
Lamberth, K.5
Buus, S.6
Brunak, S.7
Lund, O.8
-
61
-
-
0037407113
-
Reliable Prediction of T-cell Epitopes Using Neural Networks with Novel Sequence Representations
-
Nielsen, M.; Lundegaard, C.; Worning, P.; Lauemoller, S. L.; Lamberth, K.; Buus, S.; Brunak, S. and Lund, O. (2003) Reliable Prediction of T-cell Epitopes Using Neural Networks with Novel Sequence Representations. Protein Sci. 12(5), 1007-1017.
-
(2003)
Protein Sci
, vol.12
, Issue.5
, pp. 1007-1017
-
-
Nielsen, M.1
Lundegaard, C.2
Worning, P.3
Lauemoller, S.L.4
Lamberth, K.5
Buus, S.6
Brunak, S.7
Lund, O.8
-
62
-
-
0031154831
-
Somatic Mutation Leads to Efficient Affinity Maturation When Centrocytes Recycle Back to Centroblasts
-
Oprea, M. and Perelson, A. S. (1997) Somatic Mutation Leads to Efficient Affinity Maturation When Centrocytes Recycle Back to Centroblasts. J. Immunol. 158, 5155-5162.
-
(1997)
J. Immunol
, vol.158
, pp. 5155-5162
-
-
Oprea, M.1
Perelson, A.S.2
-
63
-
-
20844453250
-
Modeling and Simulation of Cancer Immunoprevention Vaccine
-
Pappalardo, F.; Lollini, P. -L.; Castiglione, F. and Motta, S. (2005) Modeling and Simulation of Cancer Immunoprevention Vaccine. Bioinformatics. 21(12), 2891-2897.
-
(2005)
Bioinformatics
, vol.21
, Issue.12
, pp. 2891-2897
-
-
Pappalardo, F.1
Lollini, P.-L.2
Castiglione, F.3
Motta, S.4
-
64
-
-
33750296099
-
Model Deconstruction of an Immunoprevention Vaccine
-
Pappalardo, F.; Lollini, P. -L.; Motta, S. and Mastriani, E. (2006) Model Deconstruction of an Immunoprevention Vaccine. Lect. Notes Comput. Sci. 4222, 350-353.
-
(2006)
Lect. Notes Comput. Sci
, vol.4222
, pp. 350-353
-
-
Pappalardo, F.1
Lollini, P.-L.2
Motta, S.3
Mastriani, E.4
-
65
-
-
48249141403
-
Modeling Immune System Control of Atherogenesis
-
Pappalardo, F.; Musumeci, S. and Motta, S. (2008) Modeling Immune System Control of Atherogenesis. Bioinformatics 24(15), 1715-1721.
-
(2008)
Bioinformatics
, vol.24
, Issue.15
, pp. 1715-1721
-
-
Pappalardo, F.1
Musumeci, S.2
Motta, S.3
-
66
-
-
48249129088
-
Optimal vaccination schedules using Simulated Annealing
-
Pennisi, M.; Catanuto, R.; Pappalardo, F.; Motta, S. (2008) Optimal vaccination schedules using Simulated Annealing. Bioinformatics 24(15), 1740-1742.
-
(2008)
Bioinformatics
, vol.24
, Issue.15
, pp. 1740-1742
-
-
Pennisi, M.1
Catanuto, R.2
Pappalardo, F.3
Motta, S.4
-
68
-
-
42549117219
-
-
In PhD Thesis PhD, Berlin, Germany, Humboldt University
-
Peters, B. (2003) Modeling the MHC-I pathway. In PhD Thesis (PhD). Berlin, Germany, Humboldt University.
-
(2003)
Modeling the MHC-I pathway
-
-
Peters, B.1
-
69
-
-
33745584371
-
A Community Resource Benchmarking Predictions of Peptide Binding to MHC-I Molecules
-
Peters, B.; Bui, H. -H.; Frankild, S.; Nielsen, M.; Lundegaard, C.; Kostem, E.; Basch, D.; Lamberth, K.; Harndahl, M.; Fleri, W.; Wilson, S. S.; Sidney, J.; Lund, O.; Buus, S. and Sette, A. (2006) A Community Resource Benchmarking Predictions of Peptide Binding to MHC-I Molecules. PLoS Comput. Biol. 2(6), 0574-0584.
-
(2006)
PLoS Comput. Biol
, vol.2
, Issue.6
, pp. 0574-0584
-
-
Peters, B.1
Bui, H.-H.2
Frankild, S.3
Nielsen, M.4
Lundegaard, C.5
Kostem, E.6
Basch, D.7
Lamberth, K.8
Harndahl, M.9
Fleri, W.10
Wilson, S.S.11
Sidney, J.12
Lund, O.13
Buus, S.14
Sette, A.15
-
70
-
-
0041589474
-
Identifying MHC class I Epitopes by Predicting the TAP Transport Efficiency of Epitope Precursors
-
Peters, B.; Bulik, S.; Tampe, R.; Van Endert, P. M. and Holzhutter, H. G. (2003) Identifying MHC class I Epitopes by Predicting the TAP Transport Efficiency of Epitope Precursors. J. Immunol. 171(4), 1741-1749.
-
(2003)
J. Immunol
, vol.171
, Issue.4
, pp. 1741-1749
-
-
Peters, B.1
Bulik, S.2
Tampe, R.3
Van Endert, P.M.4
Holzhutter, H.G.5
-
71
-
-
20944447214
-
The Immune Epitope Database and Analysis Resource: From Vision to Blueprint
-
Peters, B.; Sidney, J.; Bourne, P.; Bui, H. H.; Buus, S.; Doh, G.; Fleri, W.; Kronenberg, M.; Kubo, R.; Lund, O.; Nemazee, D.; Ponomarenko, J. V.; Sathiamurthy, M.; Schoenberger, S.; Stewart, S.; Surko, P.; Way, S.; Wilson, S. and Sette, A. (2005) The Immune Epitope Database and Analysis Resource: From Vision to Blueprint. PLoS Biol. 3(3), e91.
-
(2005)
PLoS Biol
, vol.3
, Issue.3
-
-
Peters, B.1
Sidney, J.2
Bourne, P.3
Bui, H.H.4
Buus, S.5
Doh, G.6
Fleri, W.7
Kronenberg, M.8
Kubo, R.9
Lund, O.10
Nemazee, D.11
Ponomarenko, J.V.12
Sathiamurthy, M.13
Schoenberger, S.14
Stewart, S.15
Surko, P.16
Way, S.17
Wilson, S.18
Sette, A.19
-
72
-
-
0035989336
-
Computational Immunology: The Coming of Age
-
Petrovsky, N. and Brusic, V. (2002) Computational Immunology: The Coming of Age. Immunol. Cell Biol. 248-254.
-
(2002)
Immunol. Cell Biol
, pp. 248-254
-
-
Petrovsky, N.1
Brusic, V.2
-
73
-
-
13944279588
-
Six Revolutions in Vaccinology
-
Plotkin, S. (2005) Six Revolutions in Vaccinology. Pediatr. Infect. Dis. J. 24(1), 1-9.
-
(2005)
Pediatr. Infect. Dis. J
, vol.24
, Issue.1
, pp. 1-9
-
-
Plotkin, S.1
-
74
-
-
36148964050
-
Heterogeneity in Vaccine Immune Response: The Role of Immunogenetics and the Emerging Field of Vaccinomics
-
Poland, G. A.; Ovsyannikova, I. G.; Jacobson, R. M. and Smith, D. I. (2007) Heterogeneity in Vaccine Immune Response: the Role of Immunogenetics and the Emerging Field of Vaccinomics. Clin. Pharmacol. Ther. 82(6), 653-664.
-
(2007)
Clin. Pharmacol. Ther
, vol.82
, Issue.6
, pp. 653-664
-
-
Poland, G.A.1
Ovsyannikova, I.G.2
Jacobson, R.M.3
Smith, D.I.4
-
75
-
-
0027399243
-
Peptides Naturally Presented by MHC Class I Molecules
-
Rammensee, H. G.; Falk, K. and Rotzschke, O. (1993) Peptides Naturally Presented by MHC Class I Molecules. Annu. Rev. Immunol. 11, 213-244.
-
(1993)
Annu. Rev. Immunol
, vol.11
, pp. 213-244
-
-
Rammensee, H.G.1
Falk, K.2
Rotzschke, O.3
-
76
-
-
36849091434
-
Bridging the Knowledge Gaps in Vaccine Design
-
Rappuoli, R. (2007) Bridging the Knowledge Gaps in Vaccine Design. Nat. Biotechnol. 25, 1361-1366.
-
(2007)
Nat. Biotechnol
, vol.25
, pp. 1361-1366
-
-
Rappuoli, R.1
-
77
-
-
0032494474
-
The Humoral Immune Response to Haemophilus Influenzae Type B: A Mathematical Model Based on T-zone and Germinal Center B-cell Dynamics
-
Rundell, A.; DeCarlo, R.; HogenEsch, H. and Doerschuk, P. (1998) The Humoral Immune Response to Haemophilus Influenzae Type B: A Mathematical Model Based on T-zone and Germinal Center B-cell Dynamics. J. Theor. Biol. 194, 341-381.
-
(1998)
J. Theor. Biol
, vol.194
, pp. 341-381
-
-
Rundell, A.1
DeCarlo, R.2
HogenEsch, H.3
Doerschuk, P.4
-
78
-
-
84857192865
-
The Exhaustion of Specific Antibody Producing Capacity During A Secondary Response
-
Academia Prague: pp
-
Sercarz, E. and Coons, A. H. (1962) The Exhaustion of Specific Antibody Producing Capacity During A Secondary Response. In: Mechanisms of Immunological Tolerance Conference; Academia Prague: pp. 78-83.
-
(1962)
Mechanisms of Immunological Tolerance Conference
, pp. 78-83
-
-
Sercarz, E.1
Coons, A.H.2
-
79
-
-
67649307556
-
A Logical Dynamic Systems Approach to the Regulation of Antigen-Driven Lymphocyte Stimulation
-
Perelson, A. S, Ed, pp
-
Sieburg, H. B. (1992) A Logical Dynamic Systems Approach to the Regulation of Antigen-Driven Lymphocyte Stimulation. In: Theoretical Immunology: Part I; Perelson, A. S. (Ed); pp. 273-293.
-
(1992)
Theoretical Immunology: Part I
, pp. 273-293
-
-
Sieburg, H.B.1
-
80
-
-
36549066107
-
Treatment Options and Individualized Medicine
-
Sioud, M. and Melien, A. (2007) Treatment Options and Individualized Medicine Methods Mol. Biol. 361, 327-340.
-
(2007)
Methods Mol. Biol
, vol.361
, pp. 327-340
-
-
Sioud, M.1
Melien, A.2
-
81
-
-
0031582973
-
Deriving Shape Space Parameters from Immunological Data
-
Smith, D. J.; Forrest, S.; Hightower, R. R. and Perelson, A. S. (1997) Deriving Shape Space Parameters from Immunological Data. J. Theor. Biol. 189, 141-150.
-
(1997)
J. Theor. Biol
, vol.189
, pp. 141-150
-
-
Smith, D.J.1
Forrest, S.2
Hightower, R.R.3
Perelson, A.S.4
-
82
-
-
0000633566
-
Immunologically Motivated Simluations of Cellular Automata
-
Stauffer, D. and Pandey, R. (1992) Immunologically Motivated Simluations of Cellular Automata. Comput. Phys. 6.(4), 404.
-
(1992)
Comput. Phys
, vol.6
, Issue.4
, pp. 404
-
-
Stauffer, D.1
Pandey, R.2
-
83
-
-
21144468667
-
High-dimensional and Very Large Cellular Automata for Immunological Shape Space
-
Stauffer, D. and Sahimi, M. (1993) High-dimensional and Very Large Cellular Automata for Immunological Shape Space. J. Modern Phys. 4, 401-408.
-
(1993)
J. Modern Phys
, vol.4
, pp. 401-408
-
-
Stauffer, D.1
Sahimi, M.2
-
84
-
-
0028211758
-
High-dimensional Simulation of Simple Immunological Models
-
Stauffer, D. and Sahimi, M. (1994) High-dimensional Simulation of Simple Immunological Models. J. Theor. Biol. 166, 289-297.
-
(1994)
J. Theor. Biol
, vol.166
, pp. 289-297
-
-
Stauffer, D.1
Sahimi, M.2
-
85
-
-
0009675994
-
Factors Determining the Differentiation Pathways of Immunocompetent Cells
-
Šterzl, J. (1967) Factors Determining the Differentiation Pathways of Immunocompetent Cells. Cold Spring Harb. Symp. Quant. Biol. 32, 493-506.
-
(1967)
Cold Spring Harb. Symp. Quant. Biol
, vol.32
, pp. 493-506
-
-
Šterzl, J.1
-
86
-
-
34250173017
-
A transporter associated with antigen-processing independent vacuolar pathway for the MHC class I-mediated presentation of endogenous transmembrane proteins
-
Tiwari, N.; Garbi, N.; Reinheckel, T.; Moldenhauer, G.; Hämmerling, G. J. and Momburg, F. (2007) A transporter associated with antigen-processing independent vacuolar pathway for the MHC class I-mediated presentation of endogenous transmembrane proteins. J. Immunol. 178(12), 7932-7942.
-
(2007)
J. Immunol
, vol.178
, Issue.12
, pp. 7932-7942
-
-
Tiwari, N.1
Garbi, N.2
Reinheckel, T.3
Moldenhauer, G.4
Hämmerling, G.J.5
Momburg, F.6
-
87
-
-
38049160615
-
Identification of a lysosomal peptide transport system induced during dendritic cell development
-
Demirel, O.; Waibler, Z.; Kalinke, U.; Grünebach, F.; Appel, S.; Brossart, P.; Hasilik, A.; Tampé, R. and Abele, R. (2007) Identification of a lysosomal peptide transport system induced during dendritic cell development. J. Biol. Chem. 282(52), 37836-37843.
-
(2007)
J. Biol. Chem
, vol.282
, Issue.52
, pp. 37836-37843
-
-
Demirel, O.1
Waibler, Z.2
Kalinke, U.3
Grünebach, F.4
Appel, S.5
Brossart, P.6
Hasilik, A.7
Tampé, R.8
Abele, R.9
-
88
-
-
34548654412
-
Efficient cross-presentation by heat shock protein 90-peptide complex-loaded dendritic cells via an endosomal pathway
-
Kurotaki, T.; Tamura, Y.; Ueda, G.; Oura, J.; Kutomi, G.; Hirohashi, Y.; Sahara, H.; Torigoe, T.; Hiratsuka, H.; Sunakawa, H.; Hirata, K. and Sato, N. (2007) Efficient cross-presentation by heat shock protein 90-peptide complex-loaded dendritic cells via an endosomal pathway. J. Immunol. 179(3), 1803-1813.
-
(2007)
J. Immunol
, vol.179
, Issue.3
, pp. 1803-1813
-
-
Kurotaki, T.1
Tamura, Y.2
Ueda, G.3
Oura, J.4
Kutomi, G.5
Hirohashi, Y.6
Sahara, H.7
Torigoe, T.8
Hiratsuka, H.9
Sunakawa, H.10
Hirata, K.11
Sato, N.12
-
89
-
-
33947268666
-
Modeling intercellular interactions in the peripheral immune system
-
PhD thesis, Computer Science Department, Albuquerque, NM 87131, University of New Mexico
-
Warrender, C. E. (2004). "Modeling intercellular interactions in the peripheral immune system". PhD thesis, Computer Science Department,. Albuquerque, NM 87131, University of New Mexico.
-
(2004)
-
-
Warrender, C.E.1
-
90
-
-
85036835860
-
CyCells Simulator
-
software available online on SourceForge at:, Last accessed 27 June 2008
-
Warrender, C. E. (2005) CyCells Simulator. Open source GNU GPL software available online on SourceForge at: http://sourceforge.net/ projects/cycells. Last accessed 27 June 2008.
-
(2005)
Open source GNU GPL
-
-
Warrender, C.E.1
-
91
-
-
33750735048
-
Modeling intercellular interactions in early mycobaterium infection
-
Warrender, C. E.; Forrest, S. and Koster, F. (2006) Modeling intercellular interactions in early mycobaterium infection. Bull. Math. Biol. 68, 2233-2261.
-
(2006)
Bull. Math. Biol
, vol.68
, pp. 2233-2261
-
-
Warrender, C.E.1
Forrest, S.2
Koster, F.3
-
94
-
-
32944482229
-
Pharmacogenetics and Pharmacogenomics in Oncology Therapeutic Antibody Development
-
Yan, L. and Beckman, R. A. (2005) Pharmacogenetics and Pharmacogenomics in Oncology Therapeutic Antibody Development. Biotechniques 39(4), 565-568.
-
(2005)
Biotechniques
, vol.39
, Issue.4
, pp. 565-568
-
-
Yan, L.1
Beckman, R.A.2
-
95
-
-
38349072025
-
Understanding Prediction Systems for HLA-Binding Peptides and T-cell Epitope Identification
-
You, L.; Zhang, P.; Boden, M. and Bursic, V. (2007) Understanding Prediction Systems for HLA-Binding Peptides and T-cell Epitope Identification. Lect. Notes Comput. Sci. 4774, 337-348.
-
(2007)
Lect. Notes Comput. Sci
, vol.4774
, pp. 337-348
-
-
You, L.1
Zhang, P.2
Boden, M.3
Bursic, V.4
-
96
-
-
53949116685
-
Coveney PV, Essex JW: Production Level Scientific Simulation Management on International Federated Grids
-
Zasada, S. J.; Cheney, B. G.; Saksena, R. S. and Suter, J. L. (2007) Coveney PV, Essex JW: Production Level Scientific Simulation Management on International Federated Grids. Proceedings of the 2nd TeraGrid Conference.
-
(2007)
Proceedings of the 2nd TeraGrid Conference
-
-
Zasada, S.J.1
Cheney, B.G.2
Saksena, R.S.3
Suter, J.L.4
|