메뉴 건너뛰기




Volumn 28, Issue 2, 2011, Pages 137-151

Genetic, genomic, and molecular tools for studying the protoploid yeast, L. waltii

Author keywords

Cell cycle; Genome browser; Karyotype; Mating type; Ploidy; Transformation

Indexed keywords

ARTICLE; BIOTRANSFORMATION; CELL CYCLE ARREST; CENTROMERE; FUNGAL GENETICS; FUNGUS GROWTH; GENE DUPLICATION; GENE SEQUENCE; GENOMICS; KARYOTYPE; LACHANCEA WALTII; MATING; MOLECULAR EVOLUTION; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; SACCHAROMYCES CEREVISIAE; YEAST;

EID: 78751510883     PISSN: 0749503X     EISSN: 10970061     Source Type: Journal    
DOI: 10.1002/yea.1826     Document Type: Article
Times cited : (13)

References (46)
  • 1
    • 0003855149 scopus 로고    scopus 로고
    • Short Protocols in Molecular Biology: a Compendium of Methods from Current Protocols in Molecular Biology
    • 3rd edn. John Wiley & Sons: New York.
    • Ausubel FM. 1997. Short Protocols in Molecular Biology: a Compendium of Methods from Current Protocols in Molecular Biology, 3rd edn. John Wiley & Sons: New York.
    • (1997)
    • Ausubel, F.M.1
  • 2
    • 0004248830 scopus 로고    scopus 로고
    • Yeasts: Characteristics and Identification
    • 3 edn. Cambridge University Press: Cambridge.
    • Barnett JA, Payne RW, Yarrow D. 2000. Yeasts: Characteristics and Identification, 3 edn. Cambridge University Press: Cambridge.
    • (2000)
    • Barnett, J.A.1    Payne, R.W.2    Yarrow, D.3
  • 3
    • 0032429698 scopus 로고    scopus 로고
    • Inter- and intraspecific chromosome pattern variation in the yeast genus Kluyveromyces
    • Belloch C, Barrio E, Garcia MD, Querol A. 1998. Inter- and intraspecific chromosome pattern variation in the yeast genus Kluyveromyces. Yeast 14: 1341-1354.
    • (1998) Yeast , vol.14 , pp. 1341-1354
    • Belloch, C.1    Barrio, E.2    Garcia, M.D.3    Querol, A.4
  • 4
    • 0031024913 scopus 로고    scopus 로고
    • Exponential growth rates of species of the yeast genus Kluyveromyces
    • Bitzilekis S, Barnett JA. 1997. Exponential growth rates of species of the yeast genus Kluyveromyces. FEMS Microbiol Lett 146: 189-190.
    • (1997) FEMS Microbiol Lett , vol.146 , pp. 189-190
    • Bitzilekis, S.1    Barnett, J.A.2
  • 6
    • 66649105285 scopus 로고    scopus 로고
    • Evolution of pathogenicity and sexual reproduction in eight Candida genomes
    • Butler G, Rasmussen MD, Lin MF, et al. 2009. Evolution of pathogenicity and sexual reproduction in eight Candida genomes. Nature 459: 657-662.
    • (2009) Nature , vol.459 , pp. 657-662
    • Butler, G.1    Rasmussen, M.D.2    Lin, M.F.3
  • 7
    • 25844471721 scopus 로고    scopus 로고
    • The Yeast Gene Order Browser: combining curated homology and syntenic context reveals gene fate in polyploid species
    • Byrne KP, Wolfe KH. 2005. The Yeast Gene Order Browser: combining curated homology and syntenic context reveals gene fate in polyploid species. Genome Res 15: 1456-1461.
    • (2005) Genome Res , vol.15 , pp. 1456-1461
    • Byrne, K.P.1    Wolfe, K.H.2
  • 8
    • 78751529355 scopus 로고    scopus 로고
    • The Short Life and Happy Times of the Shmoo
    • Peter Mayer: New York.
    • Capp A. 2002. The Short Life and Happy Times of the Shmoo. Peter Mayer: New York.
    • (2002)
    • Capp, A.1
  • 10
    • 67149116767 scopus 로고    scopus 로고
    • Genome sequence of the recombinant protein production host Pichia pastoris
    • De Schutter K, Lin YC, Tiels P, et al. 2009. Genome sequence of the recombinant protein production host Pichia pastoris. Nat Biotechnol 27: 561-566.
    • (2009) Nat Biotechnol , vol.27 , pp. 561-566
    • De Schutter, K.1    Lin, Y.C.2    Tiels, P.3
  • 11
    • 11144355642 scopus 로고    scopus 로고
    • The Ashbya gossypii genome as a tool for mapping the ancient Saccharomyces cerevisiae genome
    • Dietrich FS, Voegeli S, Brachat S, et al. 2004. The Ashbya gossypii genome as a tool for mapping the ancient Saccharomyces cerevisiae genome. Science 304: 304-307.
    • (2004) Science , vol.304 , pp. 304-307
    • Dietrich, F.S.1    Voegeli, S.2    Brachat, S.3
  • 12
    • 65449179200 scopus 로고    scopus 로고
    • Saccharomyces cerevisiae: population divergence and resistance to oxidative stress in clinical, domesticated and wild isolates
    • Diezmann S, Dietrich FS. 2009. Saccharomyces cerevisiae: population divergence and resistance to oxidative stress in clinical, domesticated and wild isolates. PLoS One 4: e5317.
    • (2009) PLoS One , vol.4
    • Diezmann, S.1    Dietrich, F.S.2
  • 13
    • 77649234374 scopus 로고    scopus 로고
    • Fragile genomic sites are associated with origins of replication
    • Di Rienzi SC, Collingwood D, Raghuraman MK, et al. 2009. Fragile genomic sites are associated with origins of replication. Genome Biol Evol 2009: 350-363.
    • (2009) Genome Biol Evol , vol.2009 , pp. 350-363
    • Di Rienzi, S.C.1    Collingwood, D.2    Raghuraman, M.K.3
  • 15
    • 3042720475 scopus 로고    scopus 로고
    • Genome evolution in yeasts
    • Dujon B, Sherman D, Fischer G, et al. 2004. Genome evolution in yeasts. Nature 430: 35-44.
    • (2004) Nature , vol.430 , pp. 35-44
    • Dujon, B.1    Sherman, D.2    Fischer, G.3
  • 16
    • 0020632427 scopus 로고
    • Genes that act before conjugation to prepare the Saccharomyces cerevisiae nucleus for caryogamy
    • Dutcher SK, Hartwell LH. 1983. Genes that act before conjugation to prepare the Saccharomyces cerevisiae nucleus for caryogamy. Cell 33: 203-210.
    • (1983) Cell , vol.33 , pp. 203-210
    • Dutcher, S.K.1    Hartwell, L.H.2
  • 17
    • 16344393340 scopus 로고    scopus 로고
    • Comparative genomics in hemiascomycete yeasts: evolution of sex, silencing, and subtelomeres
    • Fabre E, Muller H, Therizols P, et al. 2005. Comparative genomics in hemiascomycete yeasts: evolution of sex, silencing, and subtelomeres. Mol Biol Evol 22: 856-873.
    • (2005) Mol Biol Evol , vol.22 , pp. 856-873
    • Fabre, E.1    Muller, H.2    Therizols, P.3
  • 18
    • 63449135035 scopus 로고    scopus 로고
    • Gene expression divergence in yeast is coupled to evolution of DNA-encoded nucleosome organization
    • Field Y, Fondufe-Mittendorf Y, Moore IK, et al. 2009. Gene expression divergence in yeast is coupled to evolution of DNA-encoded nucleosome organization. Nat Genet 41: 438-445.
    • (2009) Nat Genet , vol.41 , pp. 438-445
    • Field, Y.1    Fondufe-Mittendorf, Y.2    Moore, I.K.3
  • 19
    • 34347260322 scopus 로고    scopus 로고
    • Frozen competent yeast cells that can be transformed with high efficiency using the LiAc/SS carrier DNA/PEG method
    • Gietz RD, Schiestl RH. 2007. Frozen competent yeast cells that can be transformed with high efficiency using the LiAc/SS carrier DNA/PEG method. Nat Protoc 2: 1-4.
    • (2007) Nat Protoc , vol.2 , pp. 1-4
    • Gietz, R.D.1    Schiestl, R.H.2
  • 20
    • 67149106149 scopus 로고    scopus 로고
    • Additions, losses, and rearrangements on the evolutionary route from a reconstructed ancestor to the modern Saccharomyces cerevisiae genome
    • Gordon JL, Byrne KP, Wolfe KH. 2009. Additions, losses, and rearrangements on the evolutionary route from a reconstructed ancestor to the modern Saccharomyces cerevisiae genome. PLoS Genet 5: e1000485.
    • (2009) PLoS Genet , vol.5
    • Gordon, J.L.1    Byrne, K.P.2    Wolfe, K.H.3
  • 22
    • 0029684896 scopus 로고    scopus 로고
    • RARE-cleavage analysis of YACs
    • Iadonato SP, Gnirke A. 1996. RARE-cleavage analysis of YACs. Meth Mol Biol 54: 75-85.
    • (1996) Meth Mol Biol , vol.54 , pp. 75-85
    • Iadonato, S.P.1    Gnirke, A.2
  • 23
    • 0025268898 scopus 로고
    • Courtship in Saccharomyces cerevisiae: an early cell-cell interaction during mating
    • Jackson CL, Hartwell LH. 1990. Courtship in Saccharomyces cerevisiae: an early cell-cell interaction during mating. Mol Cell Biol 10: 2202-2213.
    • (1990) Mol Cell Biol , vol.10 , pp. 2202-2213
    • Jackson, C.L.1    Hartwell, L.H.2
  • 24
    • 33947156343 scopus 로고    scopus 로고
    • Genome sequence of the lignocellulose-bioconverting and xylose-fermenting yeast Pichia stipitis
    • Jeffries TW, Grigoriev IV, Grimwood J, et al. 2007. Genome sequence of the lignocellulose-bioconverting and xylose-fermenting yeast Pichia stipitis. Nat Biotechnol 25: 319-326.
    • (2007) Nat Biotechnol , vol.25 , pp. 319-326
    • Jeffries, T.W.1    Grigoriev, I.V.2    Grimwood, J.3
  • 25
    • 1942452749 scopus 로고    scopus 로고
    • Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiae
    • Kellis M, Birren BW, Lander ES. 2004. Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiae. Nature 428: 617-624.
    • (2004) Nature , vol.428 , pp. 617-624
    • Kellis, M.1    Birren, B.W.2    Lander, E.S.3
  • 26
    • 26444524384 scopus 로고
    • Ascosporogenous yeasts isolated from tree exudates in Japan
    • Kodama K, Kyono T. 1974. Ascosporogenous yeasts isolated from tree exudates in Japan. J Ferment Technol 52: 605-613.
    • (1974) J Ferment Technol , vol.52 , pp. 605-613
    • Kodama, K.1    Kyono, T.2
  • 27
    • 0018391587 scopus 로고
    • A comparative ultrastructural study of the ascospores of some Saccharomyces and Kluyveromyces species
    • Kreger-van Rij NJW. 1979. A comparative ultrastructural study of the ascospores of some Saccharomyces and Kluyveromyces species. Arch Microbiol 121: 53-59.
    • (1979) Arch Microbiol , vol.121 , pp. 53-59
    • Kreger-van Rij, N.J.W.1
  • 28
    • 0344256533 scopus 로고    scopus 로고
    • Phylogenetic circumscription of Saccharomyces, Kluyveromyces and other members of the Saccharomycetaceae, and the proposal of the new genera Lachancea, Nakaseomyces, Naumovia, Vanderwaltozyma and O{ogonek}ygotorulaspora
    • Kurtzman CP. 2003. Phylogenetic circumscription of Saccharomyces, Kluyveromyces and other members of the Saccharomycetaceae, and the proposal of the new genera Lachancea, Nakaseomyces, Naumovia, Vanderwaltozyma and O{ogonek}ygotorulaspora. FEMS Yeast Res 4: 233-45.
    • (2003) FEMS Yeast Res , vol.4 , pp. 233-245
    • Kurtzman, C.P.1
  • 29
    • 0004021478 scopus 로고    scopus 로고
    • The Yeasts, a Taxonomic Study
    • 4 edn. Elsevier Science: New York.
    • Kurtzman CP, Fell JW. 1998. The Yeasts, a Taxonomic Study, 4 edn. Elsevier Science: New York.
    • (1998)
    • Kurtzman, C.P.1    Fell, J.W.2
  • 30
    • 62649089109 scopus 로고    scopus 로고
    • Population genomics of domestic and wild yeasts
    • Liti G, Carter DM, Moses AM, et al. 2009. Population genomics of domestic and wild yeasts. Nature 458: 337-341.
    • (2009) Nature , vol.458 , pp. 337-341
    • Liti, G.1    Carter, D.M.2    Moses, A.M.3
  • 31
    • 0035710746 scopus 로고    scopus 로고
    • Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method
    • Livak KJ, Schmittgen TD. 2001. Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method. Methods 25: 402-408.
    • (2001) Methods , vol.25 , pp. 402-408
    • Livak, K.J.1    Schmittgen, T.D.2
  • 32
    • 0021983937 scopus 로고
    • Parental age and the life-span of zygotes of Saccharomyces cerevisiae
    • Muller I. 1985. Parental age and the life-span of zygotes of Saccharomyces cerevisiae. Antonie Van Leeuwenhoek 51: 1-10.
    • (1985) Antonie Van Leeuwenhoek , vol.51 , pp. 1-10
    • Muller, I.1
  • 33
    • 67649602562 scopus 로고    scopus 로고
    • Genome sequence of the lager brewing yeast, an interspecies hybrid
    • Nakao Y, Kanamori T, Itoh T, et al. 2009. Genome sequence of the lager brewing yeast, an interspecies hybrid. DNA Res 16: 115-129.
    • (2009) DNA Res , vol.16 , pp. 115-129
    • Nakao, Y.1    Kanamori, T.2    Itoh, T.3
  • 34
    • 0024293556 scopus 로고
    • The WHI1+ gene of Saccharomyces cerevisiae tethers cell division to cell size and is a cyclin homolog
    • Nash R, Tokiwa G, Anand S, Erickson K, Futcher AB. 1988. The WHI1+ gene of Saccharomyces cerevisiae tethers cell division to cell size and is a cyclin homolog. EMBO J 7: 4335-4346.
    • (1988) EMBO J , vol.7 , pp. 4335-4346
    • Nash, R.1    Tokiwa, G.2    Anand, S.3    Erickson, K.4    Futcher, A.B.5
  • 36
    • 70349515584 scopus 로고    scopus 로고
    • Eukaryote-to-eukaryote gene transfer events revealed by the genome sequence of the wine yeast Saccharomyces cerevisiae EC1118
    • Novo M, Bigey F, Beyne E, et al. 2009. Eukaryote-to-eukaryote gene transfer events revealed by the genome sequence of the wine yeast Saccharomyces cerevisiae EC1118. Proc Natl Acad Sci USA 106: 16333-16338.
    • (2009) Proc Natl Acad Sci USA , vol.106 , pp. 16333-16338
    • Novo, M.1    Bigey, F.2    Beyne, E.3
  • 37
    • 68349157380 scopus 로고    scopus 로고
    • Insertion of horizontally transferred genes within conserved syntenic regions of yeast genomes
    • Rolland T, Neuveglise C, Sacerdot C, Dujon B. 2009. Insertion of horizontally transferred genes within conserved syntenic regions of yeast genomes. PLoS One 4: e6515.
    • (2009) PLoS One , vol.4
    • Rolland, T.1    Neuveglise, C.2    Sacerdot, C.3    Dujon, B.4
  • 38
    • 0003529272 scopus 로고
    • Methods in Yeast Genetics: a Laboratory Course Manual
    • Cold Spring Harbor Laboratory Press: Cold Spring Harbor, NY.
    • Rose MD, Winston F, Hieter P. 1990. Methods in Yeast Genetics: a Laboratory Course Manual. Cold Spring Harbor Laboratory Press: Cold Spring Harbor, NY.
    • (1990)
    • Rose, M.D.1    Winston, F.2    Hieter, P.3
  • 39
    • 34347209089 scopus 로고    scopus 로고
    • Independent sorting-out of thousands of duplicated gene pairs in two yeast species descended from a whole-genome duplication
    • Scannell DR, Frank AC, Conant GC, Byrne KP, Woolfit M, Wolfe KH. 2007. Independent sorting-out of thousands of duplicated gene pairs in two yeast species descended from a whole-genome duplication. Proc Natl Acad Sci USA 104: 8397-8402.
    • (2007) Proc Natl Acad Sci USA , vol.104 , pp. 8397-8402
    • Scannell, D.R.1    Frank, A.C.2    Conant, G.C.3    Byrne, K.P.4    Woolfit, M.5    Wolfe, K.H.6
  • 40
    • 62649126517 scopus 로고    scopus 로고
    • Comprehensive polymorphism survey elucidates population structure of Saccharomyces cerevisiae
    • Schacherer J, Shapiro JA, Ruderfer DM, Kruglyak L. 2009. Comprehensive polymorphism survey elucidates population structure of Saccharomyces cerevisiae. Nature 458: 342-345.
    • (2009) Nature , vol.458 , pp. 342-345
    • Schacherer, J.1    Shapiro, J.A.2    Ruderfer, D.M.3    Kruglyak, L.4
  • 41
    • 78751524990 scopus 로고    scopus 로고
    • SGD.Yeast Genome Snapshot. Available from:.
    • SGD. 2010. Yeast Genome Snapshot. Available from: .
    • (2010)
  • 42
    • 70349490066 scopus 로고    scopus 로고
    • Comparative genomics of protoploid Saccharomycetaceae
    • Souciet JL, Dujon B, Gaillardin C, et al. 2009. Comparative genomics of protoploid Saccharomycetaceae. Genome Res 19: 1696-1709.
    • (2009) Genome Res , vol.19 , pp. 1696-1709
    • Souciet, J.L.1    Dujon, B.2    Gaillardin, C.3
  • 43
    • 18644378331 scopus 로고    scopus 로고
    • The generic genome browser: a building block for a model organism system database
    • Stein LD, Mungall C, Shu S, et al. 2002. The generic genome browser: a building block for a model organism system database. Genome Res 12: 1599-1610.
    • (2002) Genome Res , vol.12 , pp. 1599-1610
    • Stein, L.D.1    Mungall, C.2    Shu, S.3
  • 44
    • 0013826158 scopus 로고
    • The emendation of the genus Kluyveromyces v. d. Walt
    • van der Walt JP. 1965. The emendation of the genus Kluyveromyces v. d. Walt. Antonie Van Leeuwenhoek 31: 341-348.
    • (1965) Antonie Van Leeuwenhoek , vol.31 , pp. 341-348
    • van der Walt, J.P.1
  • 46
    • 3042695524 scopus 로고    scopus 로고
    • Evolutionary genomics: yeasts accelerate beyond BLAST
    • Wolfe K. 2004. Evolutionary genomics: yeasts accelerate beyond BLAST. Curr Biol 14: R392-394.
    • (2004) Curr Biol , vol.14
    • Wolfe, K.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.