-
1
-
-
46249134068
-
Sepsid even-skipped enhancers are functionally conserved in Drosophila despite lack of sequence conservation
-
Hare EE, Peterson BK, Iyer VN, Meier R, Eisen MB, (2008) Sepsid even-skipped enhancers are functionally conserved in Drosophila despite lack of sequence conservation. PLoS Genet 4: e1000106 doi:10.1371/journal.pgen.1000106.
-
(2008)
PLoS Genet
, vol.4
-
-
Hare, E.E.1
Peterson, B.K.2
Iyer, V.N.3
Meier, R.4
Eisen, M.B.5
-
2
-
-
77950580571
-
Structural rules and complex regulatory circuitry constrain expression of a Notch- and EGFR-regulated eye enhancer
-
Swanson CI, Evans NC, Barolo S, (2010) Structural rules and complex regulatory circuitry constrain expression of a Notch- and EGFR-regulated eye enhancer. Developmental Cell 18: 359-370.
-
(2010)
Developmental Cell
, vol.18
, pp. 359-370
-
-
Swanson, C.I.1
Evans, N.C.2
Barolo, S.3
-
3
-
-
0031889035
-
Functional analysis of eve stripe 2 enhancer evolution in Drosophila: Rules governing conservation and change
-
Ludwig MZ, Patel NH, Kreitman M, (1998) Functional analysis of eve stripe 2 enhancer evolution in Drosophila: Rules governing conservation and change. Development 125: 949-958.
-
(1998)
Development
, vol.125
, pp. 949-958
-
-
Ludwig, M.Z.1
Patel, N.H.2
Kreitman, M.3
-
4
-
-
34249723155
-
Frequent gain and loss of functional transcription factor binding sites
-
Doniger SW, Fay JC, (2007) Frequent gain and loss of functional transcription factor binding sites. PLoS Comput Biol 3: e99 doi:10.1371/journal.pcbi.0030099.
-
(2007)
PLoS Comput Biol
, vol.3
-
-
Doniger, S.W.1
Fay, J.C.2
-
5
-
-
79955623470
-
Does positive selection drive transcription factor binding site turnover? A test with Drosophila cis-regulatory modules
-
He BZ, Holloway AK, Maerkl SJ, Kreitman M, (2011) Does positive selection drive transcription factor binding site turnover? A test with Drosophila cis-regulatory modules. PLoS Genet 7: e1002053 doi:10.1371/journal.pgen.1002053.
-
(2011)
PLoS Genet
, vol.7
-
-
He, B.Z.1
Holloway, A.K.2
Maerkl, S.J.3
Kreitman, M.4
-
6
-
-
0035992352
-
Coevolution in bicoid-dependent promoters and the inception of regulatory incompatibilities among species of higher Diptera
-
Shaw PJ, Wratten NS, McGregor AP, Dover GA, (2002) Coevolution in bicoid-dependent promoters and the inception of regulatory incompatibilities among species of higher Diptera. Evol Dev 4: 265-277.
-
(2002)
Evol Dev
, vol.4
, pp. 265-277
-
-
Shaw, P.J.1
Wratten, N.S.2
McGregor, A.P.3
Dover, G.A.4
-
7
-
-
79956293316
-
Extensive DNA-binding specificity divergence of a conserved transcription regulator
-
Baker CR, Tuch BB, Johnson AD, (2011) Extensive DNA-binding specificity divergence of a conserved transcription regulator. Proc Natl Acad Sci U S A 108: 7493-7498.
-
(2011)
Proc Natl Acad Sci U S A
, vol.108
, pp. 7493-7498
-
-
Baker, C.R.1
Tuch, B.B.2
Johnson, A.D.3
-
8
-
-
33645131133
-
Compensatory cis-trans evolution and the dysregulation of gene expression in interspecific hybrids of Drosophila
-
Landry CR, Wittkopp PJ, Taubes CH, Ranz JM, Clark AG, et al. (2005) Compensatory cis-trans evolution and the dysregulation of gene expression in interspecific hybrids of Drosophila. Genetics 171: 1813-1822.
-
(2005)
Genetics
, vol.171
, pp. 1813-1822
-
-
Landry, C.R.1
Wittkopp, P.J.2
Taubes, C.H.3
Ranz, J.M.4
Clark, A.G.5
-
9
-
-
77955045449
-
The role of nucleosome positioning in the evolution of gene regulation
-
Tsankov AM, Thompson DA, Socha A, Regev A, Rando OJ, (2010) The role of nucleosome positioning in the evolution of gene regulation. PLoS Biol 8: e1000414 doi:10.1371/journal.pbio.1000414.
-
(2010)
PLoS Biol
, vol.8
-
-
Tsankov, A.M.1
Thompson, D.A.2
Socha, A.3
Regev, A.4
Rando, O.J.5
-
10
-
-
77950863293
-
Remarkably ancient balanced polymorphisms in a multi-locus gene network
-
Hittinger CT, Goncalves P, Sampaio JP, Dover J, Johnston M, et al. (2010) Remarkably ancient balanced polymorphisms in a multi-locus gene network. Nature 464: 54-58.
-
(2010)
Nature
, vol.464
, pp. 54-58
-
-
Hittinger, C.T.1
Goncalves, P.2
Sampaio, J.P.3
Dover, J.4
Johnston, M.5
-
11
-
-
58849139595
-
Genetic interactions between transcription factors cause natural variation in yeast
-
Gerke J, Lorenz K, Cohen B, (2009) Genetic interactions between transcription factors cause natural variation in yeast. Science 323: 498-501.
-
(2009)
Science
, vol.323
, pp. 498-501
-
-
Gerke, J.1
Lorenz, K.2
Cohen, B.3
-
12
-
-
14044252090
-
Conservation and evolution of cis-regulatory systems in ascomycete fungi
-
10.1371/journal.pbio.0020398
-
Gasch AP, Moses AM, Chiang DY, Fraser HB, Berardini M, et al. (2004) Conservation and evolution of cis-regulatory systems in ascomycete fungi. PLoS Biol 2: e398 doi:10.1371/journal.pbio.0020398.
-
(2004)
PLoS Biol
, vol.2
-
-
Gasch, A.P.1
Moses, A.M.2
Chiang, D.Y.3
Fraser, H.B.4
Berardini, M.5
-
13
-
-
35148863240
-
Gene duplication and the adaptive evolution of a classic genetic switch
-
Hittinger CT, Carroll SB, (2007) Gene duplication and the adaptive evolution of a classic genetic switch. Nature 449: 677-681.
-
(2007)
Nature
, vol.449
, pp. 677-681
-
-
Hittinger, C.T.1
Carroll, S.B.2
-
14
-
-
40149098862
-
The evolution of combinatorial gene regulation in fungi
-
10.1371/journal.pbio.0060038
-
Tuch BB, Galgoczy DJ, Hernday AD, Li H, Johnson AD, (2008) The evolution of combinatorial gene regulation in fungi. PLoS Biol 6: e38 doi:10.1371/journal.pbio.0060038.
-
(2008)
PLoS Biol
, vol.6
-
-
Tuch, B.B.1
Galgoczy, D.J.2
Hernday, A.D.3
Li, H.4
Johnson, A.D.5
-
15
-
-
1442336016
-
Evolutionary innovation of the excretory system in Caenorhabditis elegans
-
Wang XD, Chamberlin HM, (2004) Evolutionary innovation of the excretory system in Caenorhabditis elegans. Nat Genet 36: 231-232.
-
(2004)
Nat Genet
, vol.36
, pp. 231-232
-
-
Wang, X.D.1
Chamberlin, H.M.2
-
16
-
-
73349095713
-
Roles of trans and cis variation in yeast intraspecies evolution of gene expression
-
Sung H, Wang T, Wang D, Huang Y, Wu J, et al. (2009) Roles of trans and cis variation in yeast intraspecies evolution of gene expression. Mol Biol Evol 26: 2533-2538.
-
(2009)
Mol Biol Evol
, vol.26
, pp. 2533-2538
-
-
Sung, H.1
Wang, T.2
Wang, D.3
Huang, Y.4
Wu, J.5
-
17
-
-
33845489511
-
Two or four bristles: Functional evolution of an enhancer of scute in Drosophilidae
-
10.1371/journal.pbio.0040386
-
Marcellini S, Simpson P, (2006) Two or four bristles: Functional evolution of an enhancer of scute in Drosophilidae. PLoS Biol 4: e386 doi:10.1371/journal.pbio.0040386.
-
(2006)
PLoS Biol
, vol.4
-
-
Marcellini, S.1
Simpson, P.2
-
18
-
-
77952982347
-
Natural selection on cis and trans regulation in yeasts
-
Emerson JJ, Hsieh L, Sung H, Wang T, Huang C, et al. (2010) Natural selection on cis and trans regulation in yeasts. Genome Res 20: 826-836.
-
(2010)
Genome Res
, vol.20
, pp. 826-836
-
-
Emerson, J.J.1
Hsieh, L.2
Sung, H.3
Wang, T.4
Huang, C.5
-
19
-
-
4644370178
-
Extensive sex-specific nonadditivity of gene expression in Drosophila melanogaster
-
Gibson G, Riley-Berger R, Harshman L, Kopp A, Vacha S, et al. (2004) Extensive sex-specific nonadditivity of gene expression in Drosophila melanogaster. Genetics 167: 1791-1799.
-
(2004)
Genetics
, vol.167
, pp. 1791-1799
-
-
Gibson, G.1
Riley-Berger, R.2
Harshman, L.3
Kopp, A.4
Vacha, S.5
-
20
-
-
65349162170
-
Conservation of core gene expression in vertebrate tissues
-
Chan ET, Quon GT, Chua G, Babak T, Trochesset M, et al. (2009) Conservation of core gene expression in vertebrate tissues. Journal of Biology 8: 33-33.
-
(2009)
Journal of Biology
, vol.8
, pp. 33
-
-
Chan, E.T.1
Quon, G.T.2
Chua, G.3
Babak, T.4
Trochesset, M.5
-
21
-
-
0028962333
-
Detecting conserved regulatory elements with the model genome of the Japanese puffer fish, Fugu rubripes
-
Aparicio S, Morrison A, Gould A, Gilthorpe J, Chaudhuri C, et al. (1995) Detecting conserved regulatory elements with the model genome of the Japanese puffer fish, Fugu rubripes. Proc Natl Acad Sci U S A 92: 1684-1688.
-
(1995)
Proc Natl Acad Sci U S A
, vol.92
, pp. 1684-1688
-
-
Aparicio, S.1
Morrison, A.2
Gould, A.3
Gilthorpe, J.4
Chaudhuri, C.5
-
22
-
-
79959850952
-
Distinct functional constraints partition sequence conservation in a cis-regulatory element
-
10.1371/journal.pgen.1002095
-
Barriere A, Gordon KL, Ruvinsky I, (2011) Distinct functional constraints partition sequence conservation in a cis-regulatory element. PLoS Genet 7: e1002095 doi:10.1371/journal.pgen.1002095.
-
(2011)
PLoS Genet
, vol.7
-
-
Barriere, A.1
Gordon, K.L.2
Ruvinsky, I.3
-
23
-
-
0021679527
-
Molecular coevolution: DNA divergence and the maintenance of function
-
Dover GA, Flavell RB, (1984) Molecular coevolution: DNA divergence and the maintenance of function. Cell 38: 622-623.
-
(1984)
Cell
, vol.38
, pp. 622-623
-
-
Dover, G.A.1
Flavell, R.B.2
-
24
-
-
0035051264
-
Developmental system drift and flexibility in evolutionary trajectories
-
True JR, Haag ES, (2001) Developmental system drift and flexibility in evolutionary trajectories. Evol Dev 3: 109-119.
-
(2001)
Evol Dev
, vol.3
, pp. 109-119
-
-
True, J.R.1
Haag, E.S.2
-
25
-
-
33749173831
-
Evolution of alternative transcriptional circuits with identical logic
-
Tsong AE, Tuch BB, Li H, Johnson AD, (2006) Evolution of alternative transcriptional circuits with identical logic. Nature 443: 415-420.
-
(2006)
Nature
, vol.443
, pp. 415-420
-
-
Tsong, A.E.1
Tuch, B.B.2
Li, H.3
Johnson, A.D.4
-
26
-
-
49749111448
-
Roles of cis- and trans-changes in the regulatory evolution of genes in the gluconeogenic pathway in yeast
-
Chang Y, Liu FR, Yu N, Sung H, Yang P, et al. (2008) Roles of cis- and trans-changes in the regulatory evolution of genes in the gluconeogenic pathway in yeast. Mol Biol Evol 25: 1863-1875.
-
(2008)
Mol Biol Evol
, vol.25
, pp. 1863-1875
-
-
Chang, Y.1
Liu, F.R.2
Yu, N.3
Sung, H.4
Yang, P.5
-
27
-
-
65549086559
-
A yeast hybrid provides insight into the evolution of gene expression regulation
-
Tirosh I, Reikhav S, Levy AA, Barkai N, (2009) A yeast hybrid provides insight into the evolution of gene expression regulation. Science 324: 659-662.
-
(2009)
Science
, vol.324
, pp. 659-662
-
-
Tirosh, I.1
Reikhav, S.2
Levy, A.A.3
Barkai, N.4
-
28
-
-
39749116219
-
Regulatory changes underlying expression differences within and between Drosophila species
-
Wittkopp PJ, Haerum BK, Clark AG, (2008) Regulatory changes underlying expression differences within and between Drosophila species. Nat Genet 40: 346-350.
-
(2008)
Nat Genet
, vol.40
, pp. 346-350
-
-
Wittkopp, P.J.1
Haerum, B.K.2
Clark, A.G.3
-
29
-
-
77953010033
-
Regulatory divergence in Drosophila revealed by mRNA-seq
-
McManus CJ, Coolon JD, Duff MO, Eipper-Mains J, Graveley BR, et al. (2010) Regulatory divergence in Drosophila revealed by mRNA-seq. Genome Res 20: 816-825.
-
(2010)
Genome Res
, vol.20
, pp. 816-825
-
-
McManus, C.J.1
Coolon, J.D.2
Duff, M.O.3
Eipper-Mains, J.4
Graveley, B.R.5
-
30
-
-
70649107892
-
Regulatory divergence in Drosophila melanogaster and D. simulans, a genomewide analysis of allele-specific expression
-
Graze RM, McIntyre LM, Main BJ, Wayne ML, Nuzhdin SV, (2009) Regulatory divergence in Drosophila melanogaster and D. simulans, a genomewide analysis of allele-specific expression. Genetics 183: 547-561.
-
(2009)
Genetics
, vol.183
, pp. 547-561
-
-
Graze, R.M.1
McIntyre, L.M.2
Main, B.J.3
Wayne, M.L.4
Nuzhdin, S.V.5
-
31
-
-
33845664381
-
Gene expression divergence and the origin of hybrid dysfunctions
-
Ortiz-Barrientos D, Counterman BA, Noor MAF, (2007) Gene expression divergence and the origin of hybrid dysfunctions. Genetica 129: 71-81.
-
(2007)
Genetica
, vol.129
, pp. 71-81
-
-
Ortiz-Barrientos, D.1
Counterman, B.A.2
Noor, M.A.F.3
-
33
-
-
55449112185
-
Genome-wide associations of gene expression variation in humans
-
10.1371/journal.pgen.0010078
-
Stranger BE, Forrest MS, Clark AG, Minichiello MJ, Deutsch S, et al. (2005) Genome-wide associations of gene expression variation in humans. PLoS Genet 1: e78 doi:10.1371/journal.pgen.0010078.
-
(2005)
PLoS Genet
, vol.1
-
-
Stranger, B.E.1
Forrest, M.S.2
Clark, A.G.3
Minichiello, M.J.4
Deutsch, S.5
-
34
-
-
33845900450
-
Convergent adaptation of human lactase persistence in Africa and Europe
-
Tishkoff SA, Reed FA, Ranciaro A, Voight BF, Babbitt CC, et al. (2007) Convergent adaptation of human lactase persistence in Africa and Europe. Nat Genet 39: 31-40.
-
(2007)
Nat Genet
, vol.39
, pp. 31-40
-
-
Tishkoff, S.A.1
Reed, F.A.2
Ranciaro, A.3
Voight, B.F.4
Babbitt, C.C.5
-
35
-
-
77954926596
-
Natural selection on EPAS1 (HIF2 alpha) associated with low hemoglobin concentration in Tibetan highlanders
-
Beall CM, Cavalleri GL, Deng L, Elston RC, Gao Y, et al. (2010) Natural selection on EPAS1 (HIF2 alpha) associated with low hemoglobin concentration in Tibetan highlanders. Proc Natl Acad Sci U S A 107: 11459-11464.
-
(2010)
Proc Natl Acad Sci U S A
, vol.107
, pp. 11459-11464
-
-
Beall, C.M.1
Cavalleri, G.L.2
Deng, L.3
Elston, R.C.4
Gao, Y.5
-
36
-
-
84857473514
-
Tempo and mode in evolution of transcriptional regulation
-
10.1371/journal.pgen.1002432
-
Gordon KL, Ruvinsky I, (2012) Tempo and mode in evolution of transcriptional regulation. PLoS Genet 8: e1002432 doi:10.1371/journal.pgen.1002432.
-
(2012)
PLoS Genet
, vol.8
-
-
Gordon, K.L.1
Ruvinsky, I.2
-
37
-
-
0030934415
-
Cis regulatory requirements for hypodermal cell-specific expression of the Caenorhabditis elegans cuticle collagen gene dpy-7
-
Gilleard JS, Barry JD, Johnstone IL, (1997) Cis regulatory requirements for hypodermal cell-specific expression of the Caenorhabditis elegans cuticle collagen gene dpy-7. Mol Cell Biol 17: 2301-2311.
-
(1997)
Mol Cell Biol
, vol.17
, pp. 2301-2311
-
-
Gilleard, J.S.1
Barry, J.D.2
Johnstone, I.L.3
-
38
-
-
0027402124
-
The gut esterase gene (ges-1) from the nematodes Caenorhabditis elegans and Caenorhabditis briggsae
-
Kennedy BP, Aamodt EJ, Allen FL, Chung MA, Heschl MFP, et al. (1993) The gut esterase gene (ges-1) from the nematodes Caenorhabditis elegans and Caenorhabditis briggsae. J Mol Biol 229: 890-908.
-
(1993)
J Mol Biol
, vol.229
, pp. 890-908
-
-
Kennedy, B.P.1
Aamodt, E.J.2
Allen, F.L.3
Chung, M.A.4
Heschl, M.F.P.5
-
39
-
-
0037404073
-
Cis-regulatory control of three cell fate-specific genes in vulval organogenesis of Caenorhabditis elegans and C. briggsae
-
Kirouac M, Sternberg PW, (2003) Cis-regulatory control of three cell fate-specific genes in vulval organogenesis of Caenorhabditis elegans and C. briggsae. Dev Biol 257: 85-103.
-
(2003)
Dev Biol
, vol.257
, pp. 85-103
-
-
Kirouac, M.1
Sternberg, P.W.2
-
40
-
-
0041677607
-
Conservation of Endo16 expression in sea urchins despite evolutionary divergence in both cis and trans-acting components of transcriptional regulation
-
Romano LA, Wray GA, (2003) Conservation of Endo16 expression in sea urchins despite evolutionary divergence in both cis and trans-acting components of transcriptional regulation. Development 130: 4187-4199.
-
(2003)
Development
, vol.130
, pp. 4187-4199
-
-
Romano, L.A.1
Wray, G.A.2
-
41
-
-
2942596447
-
Genomic cis-regulatory architecture and trans-acting regulators of a single interneuron-specific gene battery in C. elegans
-
Wenick AS, Hobert O, (2004) Genomic cis-regulatory architecture and trans-acting regulators of a single interneuron-specific gene battery in C. elegans. Developmental Cell 6: 757-770.
-
(2004)
Developmental Cell
, vol.6
, pp. 757-770
-
-
Wenick, A.S.1
Hobert, O.2
-
42
-
-
0037106119
-
Multiple regulatory changes contribute to the evolution of the Caenorhabditis lin-48 ovo gene
-
Wang XD, Chamberlin HM, (2002) Multiple regulatory changes contribute to the evolution of the Caenorhabditis lin-48 ovo gene. Genes Dev 16: 2345-2349.
-
(2002)
Genes Dev
, vol.16
, pp. 2345-2349
-
-
Wang, X.D.1
Chamberlin, H.M.2
-
43
-
-
0037125954
-
Evolution of yellow gene regulation and pigmentation in Drosophila
-
Wittkopp PJ, Vaccaro K, Carroll SB, (2002) Evolution of yellow gene regulation and pigmentation in Drosophila. Current Biology 12: 1547-1556.
-
(2002)
Current Biology
, vol.12
, pp. 1547-1556
-
-
Wittkopp, P.J.1
Vaccaro, K.2
Carroll, S.B.3
-
44
-
-
2942669900
-
Caenorhabditis phylogeny predicts convergence of hermaphroditism and extensive intron loss
-
Kiontke K, Gavin NP, Raynes Y, Roehrig C, Piano F, et al. (2004) Caenorhabditis phylogeny predicts convergence of hermaphroditism and extensive intron loss. Proc Natl Acad Sci U S A 101: 9003-9008.
-
(2004)
Proc Natl Acad Sci U S A
, vol.101
, pp. 9003-9008
-
-
Kiontke, K.1
Gavin, N.P.2
Raynes, Y.3
Roehrig, C.4
Piano, F.5
-
45
-
-
0242467199
-
Functional tests of enhancer conservation between distantly related species
-
Ruvinsky I, Ruvkun G, (2003) Functional tests of enhancer conservation between distantly related species. Development 130: 5133-5142.
-
(2003)
Development
, vol.130
, pp. 5133-5142
-
-
Ruvinsky, I.1
Ruvkun, G.2
-
46
-
-
0027200882
-
The GABAergic nervous-system of Caenorhabditis elegans
-
Mcintire SL, Jorgensen E, Kaplan J, Horvitz HR, (1993) The GABAergic nervous-system of Caenorhabditis elegans. Nature 364: 337-341.
-
(1993)
Nature
, vol.364
, pp. 337-341
-
-
Mcintire, S.L.1
Jorgensen, E.2
Kaplan, J.3
Horvitz, H.R.4
-
48
-
-
0030734546
-
Identification and characterization of the vesicular GABA transporter
-
McIntire SL, Reimer RJ, Schuske K, Edwards RH, Jorgensen EM, (1997) Identification and characterization of the vesicular GABA transporter. Nature 389: 870-876.
-
(1997)
Nature
, vol.389
, pp. 870-876
-
-
McIntire, S.L.1
Reimer, R.J.2
Schuske, K.3
Edwards, R.H.4
Jorgensen, E.M.5
-
49
-
-
38349194085
-
Comparative analysis of embryonic cell lineage between Caenorhabditis briggsae and Caenorhabditis elegans
-
Zhao Z, Boyle TJ, Bao Z, Murray JI, Mericle B, et al. (2008) Comparative analysis of embryonic cell lineage between Caenorhabditis briggsae and Caenorhabditis elegans. Dev Biol 314: 93-99.
-
(2008)
Dev Biol
, vol.314
, pp. 93-99
-
-
Zhao, Z.1
Boyle, T.J.2
Bao, Z.3
Murray, J.I.4
Mericle, B.5
-
50
-
-
55049117864
-
Single-copy insertion of transgenes in Caenorhabditis elegans
-
Frokjaer-Jensen C, Davis MW, Hopkins CE, Newman BJ, Thummel JM, et al. (2008) Single-copy insertion of transgenes in Caenorhabditis elegans. Nat Genet 40: 1375-1383.
-
(2008)
Nat Genet
, vol.40
, pp. 1375-1383
-
-
Frokjaer-Jensen, C.1
Davis, M.W.2
Hopkins, C.E.3
Newman, B.J.4
Thummel, J.M.5
-
51
-
-
79960895900
-
Antagonism of LIN-17/Frizzled and LIN-18/Ryk in nematode vulva induction reveals evolutionary alterations in core developmental pathways
-
10.1371/journal.pbio.1001110
-
Wang X, Sommer RJ, (2011) Antagonism of LIN-17/Frizzled and LIN-18/Ryk in nematode vulva induction reveals evolutionary alterations in core developmental pathways. PLoS Biol 9: e1001110 doi:10.1371/journal.pbio.1001110.
-
(2011)
PLoS Biol
, vol.9
-
-
Wang, X.1
Sommer, R.J.2
-
52
-
-
79960708456
-
Rapid evolutionary rewiring of a structurally constrained eye enhancer
-
Swanson CI, Schwimmer DB, Barolo S, (2011) Rapid evolutionary rewiring of a structurally constrained eye enhancer. Current Biology 21: 1186-1196.
-
(2011)
Current Biology
, vol.21
, pp. 1186-1196
-
-
Swanson, C.I.1
Schwimmer, D.B.2
Barolo, S.3
-
53
-
-
84859226958
-
Cis-by-trans regulatory divergence causes the asymmetric lethal effects of an ancestral hybrid incompatibility gene
-
10.1371/journal.pgen.1002597
-
Maheshwari S, Barbash DA, (2012) Cis-by-trans regulatory divergence causes the asymmetric lethal effects of an ancestral hybrid incompatibility gene. PLoS Genet 8: e1002597 doi:10.1371/journal.pgen.1002597.
-
(2012)
PLoS Genet
, vol.8
-
-
Maheshwari, S.1
Barbash, D.A.2
-
54
-
-
0034920057
-
The evolution of postzygotic isolation: Accumulating Dobzhansky-Muller Incompatibilities
-
Orr HA, Turelli M, (2001) The evolution of postzygotic isolation: Accumulating Dobzhansky-Muller Incompatibilities. Evolution 55: 1085-1094.
-
(2001)
Evolution
, vol.55
, pp. 1085-1094
-
-
Orr, H.A.1
Turelli, M.2
-
55
-
-
13444306165
-
The landscape of genetic complexity across 5,700 gene expression traits in yeast
-
Brem RB, Kruglyak L, (2005) The landscape of genetic complexity across 5,700 gene expression traits in yeast. Proc Natl Acad Sci U S A 102: 1572-1577.
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, pp. 1572-1577
-
-
Brem, R.B.1
Kruglyak, L.2
-
56
-
-
1542316920
-
Anomalies in the expression profile of interspecific hybrids of Drosophila melanogaster and Drosophila simulans
-
Ranz JM, Namgyal K, Gibson G, Hartl DL, (2004) Anomalies in the expression profile of interspecific hybrids of Drosophila melanogaster and Drosophila simulans. Genome Res 14: 373-379.
-
(2004)
Genome Res
, vol.14
, pp. 373-379
-
-
Ranz, J.M.1
Namgyal, K.2
Gibson, G.3
Hartl, D.L.4
-
57
-
-
0038304502
-
The genetic architecture necessary for transgressive segregation is common in both natural and domesticated populations
-
Rieseberg LH, Widmer A, Arntz AM, Burke JM, (2003) The genetic architecture necessary for transgressive segregation is common in both natural and domesticated populations. Phil Trans R Soc B 358: 1141-1147.
-
(2003)
Phil Trans R Soc B
, vol.358
, pp. 1141-1147
-
-
Rieseberg, L.H.1
Widmer, A.2
Arntz, A.M.3
Burke, J.M.4
-
58
-
-
77956494602
-
The genetic basis of evolutionary change in gene expression levels
-
Emerson JJ, Li W, (2010) The genetic basis of evolutionary change in gene expression levels. Phil Trans R Soc B 365: 2581-2590.
-
(2010)
Phil Trans R Soc B
, vol.365
, pp. 2581-2590
-
-
Emerson, J.J.1
Li, W.2
-
59
-
-
0032539796
-
Caenorhabditis elegans orthologs of the aryl hydrocarbon receptor and its heterodimerization partner the aryl hydrocarbon receptor nuclear translocator
-
Powell-Coffman JA, Bradfield CA, Wood WB, (1998) Caenorhabditis elegans orthologs of the aryl hydrocarbon receptor and its heterodimerization partner the aryl hydrocarbon receptor nuclear translocator. Proc Natl Acad Sci U S A 95: 2844-2849.
-
(1998)
Proc Natl Acad Sci U S A
, vol.95
, pp. 2844-2849
-
-
Powell-Coffman, J.A.1
Bradfield, C.A.2
Wood, W.B.3
-
60
-
-
33748964104
-
The Caenorhabditis elegans AHR-1 transcription complex controls expression of soluble guanylate cyclase genes in the URX neurons and regulates aggregation behavior
-
Qin H, Zhai Z, Powell-Coffman JA, (2006) The Caenorhabditis elegans AHR-1 transcription complex controls expression of soluble guanylate cyclase genes in the URX neurons and regulates aggregation behavior. Dev Biol 298: 606-615.
-
(2006)
Dev Biol
, vol.298
, pp. 606-615
-
-
Qin, H.1
Zhai, Z.2
Powell-Coffman, J.A.3
-
61
-
-
1342263523
-
The AHR-1 aryl hydrocarbon receptor and its co-factor the AHA-1 aryl hydrocarbon receptor nuclear translocator specify GABAergic neuron cell fate in C. elegans
-
Huang X, Powell-Coffman JA, Jin YS, (2004) The AHR-1 aryl hydrocarbon receptor and its co-factor the AHA-1 aryl hydrocarbon receptor nuclear translocator specify GABAergic neuron cell fate in C. elegans. Development 131: 819-828.
-
(2004)
Development
, vol.131
, pp. 819-828
-
-
Huang, X.1
Powell-Coffman, J.A.2
Jin, Y.S.3
-
62
-
-
2342655069
-
The Caenorhabditis elegans aryl hydrocarbon receptor, AHR-1, regulates neuronal development
-
Qin HT, Powell-Coffman JA, (2004) The Caenorhabditis elegans aryl hydrocarbon receptor, AHR-1, regulates neuronal development. Dev Biol 270: 64-75.
-
(2004)
Dev Biol
, vol.270
, pp. 64-75
-
-
Qin, H.T.1
Powell-Coffman, J.A.2
-
63
-
-
0027532636
-
Protein-DNA interactions at a dioxin-responsive enhancer. Analysis of 6 bona fide DNA-binding sites for the liganded Ah receptor
-
Lusska A, Shen E, Whitlock JP, (1993) Protein-DNA interactions at a dioxin-responsive enhancer. Analysis of 6 bona fide DNA-binding sites for the liganded Ah receptor. J Biol Chem 268: 6575-6580.
-
(1993)
J Biol Chem
, vol.268
, pp. 6575-6580
-
-
Lusska, A.1
Shen, E.2
Whitlock, J.P.3
-
64
-
-
67650594823
-
A multiparameter network reveals extensive divergence between C. elegans bHLH transcription factors
-
Grove CA, De Masi F, Barrasa MI, Newburger DE, Alkema MJ, et al. (2009) A multiparameter network reveals extensive divergence between C. elegans bHLH transcription factors. Cell 138: 314-327.
-
(2009)
Cell
, vol.138
, pp. 314-327
-
-
Grove, C.A.1
de Masi, F.2
Barrasa, M.I.3
Newburger, D.E.4
Alkema, M.J.5
-
65
-
-
0032571845
-
Sequences flanking the E-box contribute to cooperative binding by c-Myc/Max heterodimers to adjacent binding sites
-
Walhout AJM, van der Vliet PC, Timmers HTM, (1998) Sequences flanking the E-box contribute to cooperative binding by c-Myc/Max heterodimers to adjacent binding sites. Biochimica Et Biophysica Acta 139: 189-201.
-
(1998)
Biochimica Et Biophysica Acta
, vol.139
, pp. 189-201
-
-
Walhout, A.J.M.1
van der Vliet, P.C.2
Timmers, H.T.M.3
-
66
-
-
84859224243
-
Widespread site-dependent buffering of human regulatory polymorphism
-
10.1371/journal.pgen.1002599
-
Maurano MT, Wang H, Kutyavin T, Stamatoyannopoulos JA, (2012) Widespread site-dependent buffering of human regulatory polymorphism. PLoS Genet 8: e1002599 doi:10.1371/journal.pgen.1002599.
-
(2012)
PLoS Genet
, vol.8
-
-
Maurano, M.T.1
Wang, H.2
Kutyavin, T.3
Stamatoyannopoulos, J.A.4
-
67
-
-
0034598832
-
Evidence for stabilizing selection in a eukaryotic enhancer element
-
Ludwig MZ, Bergman C, Patel NH, Kreitman M, (2000) Evidence for stabilizing selection in a eukaryotic enhancer element. Nature 403: 564-567.
-
(2000)
Nature
, vol.403
, pp. 564-567
-
-
Ludwig, M.Z.1
Bergman, C.2
Patel, N.H.3
Kreitman, M.4
-
68
-
-
84863946845
-
Transformation of a transposon into a derived prolactin promoter with function during human pregnancy
-
Emera D, Wagner GP, (2012) Transformation of a transposon into a derived prolactin promoter with function during human pregnancy. Proc Natl Acad Sci U S A 109: 11246-11251.
-
(2012)
Proc Natl Acad Sci U S A
, vol.109
, pp. 11246-11251
-
-
Emera, D.1
Wagner, G.P.2
-
69
-
-
79952270576
-
Prevalence of epistasis in the evolution of influenza A surface proteins
-
10.1371/journal.pgen.1001301
-
Kryazhimskiy S, Dushoff J, Bazykin GA, Plotkin JB, (2011) Prevalence of epistasis in the evolution of influenza A surface proteins. PLoS Genet 7: e1001301 doi:10.1371/journal.pgen.1001301.
-
(2011)
PLoS Genet
, vol.7
-
-
Kryazhimskiy, S.1
Dushoff, J.2
Bazykin, G.A.3
Plotkin, J.B.4
-
70
-
-
34548040966
-
Crystal structure of an ancient protein: Evolution by conformational epistasis
-
Ortlund EA, Bridgham JT, Redinbo MR, Thornton JW, (2007) Crystal structure of an ancient protein: Evolution by conformational epistasis. Science 317: 1544-1548.
-
(2007)
Science
, vol.317
, pp. 1544-1548
-
-
Ortlund, E.A.1
Bridgham, J.T.2
Redinbo, M.R.3
Thornton, J.W.4
-
71
-
-
33845672511
-
Compensatory vs. pseudocompensatory evolution in molecular and developmental interactions
-
Haag ES, (2007) Compensatory vs. pseudocompensatory evolution in molecular and developmental interactions. Genetica 129: 45-55.
-
(2007)
Genetica
, vol.129
, pp. 45-55
-
-
Haag, E.S.1
-
72
-
-
84871942442
-
Multidimensional adaptive evolution of a feed forward network and the illusion of compensation
-
Bullaughey K, (2012) Multidimensional adaptive evolution of a feed forward network and the illusion of compensation. Evolution In press.
-
(2012)
Evolution
-
-
Bullaughey, K.1
-
73
-
-
29144492108
-
Ancient and recent positive selection transformed opioid cis-regulation in humans
-
10.1371/journal.pbio.0030387
-
Rockman MV, Hahn MW, Soranzo N, Zimprich F, Goldstein DB, et al. (2005) Ancient and recent positive selection transformed opioid cis-regulation in humans. PLoS Biol 3: e387 doi:10.1371/journal.pbio.0030387.
-
(2005)
PLoS Biol
, vol.3
-
-
Rockman, M.V.1
Hahn, M.W.2
Soranzo, N.3
Zimprich, F.4
Goldstein, D.B.5
-
74
-
-
79959825697
-
Morphological evolution caused by many subtle-effect substitutions in regulatory DNA
-
Frankel N, Erezyilmaz D, McGregor AP, Wang S, Payre F, et al. (2011) Morphological evolution caused by many subtle-effect substitutions in regulatory DNA. Nature 474: 598-603.
-
(2011)
Nature
, vol.474
, pp. 598-603
-
-
Frankel, N.1
Erezyilmaz, D.2
McGregor, A.P.3
Wang, S.4
Payre, F.5
-
75
-
-
78650039587
-
Coevolution within a transcriptional network by compensatory trans and cis mutations
-
Kuo D, Licon K, Bandyopadhyay S, Chuang R, Luo C, et al. (2010) Coevolution within a transcriptional network by compensatory trans and cis mutations. Genome Res 20: 1672-1678.
-
(2010)
Genome Res
, vol.20
, pp. 1672-1678
-
-
Kuo, D.1
Licon, K.2
Bandyopadhyay, S.3
Chuang, R.4
Luo, C.5
-
76
-
-
3242681708
-
Evolution of regulatory elements producing a conserved gene expression pattern in Caenorhabditis
-
Wang XD, Greenberg JF, Chamberlin HM, (2004) Evolution of regulatory elements producing a conserved gene expression pattern in Caenorhabditis. Evol Dev 6: 237-245.
-
(2004)
Evol Dev
, vol.6
, pp. 237-245
-
-
Wang, X.D.1
Greenberg, J.F.2
Chamberlin, H.M.3
-
77
-
-
54449095844
-
Adaptive changes in the transcription factor HoxA-11 are essential for the evolution of pregnancy in mammals
-
Lynch VJ, Tanzer A, Wang Y, Leung FC, Gellersen B, et al. (2008) Adaptive changes in the transcription factor HoxA-11 are essential for the evolution of pregnancy in mammals. Proc Natl Acad Sci U S A 105: 14928-14933.
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, pp. 14928-14933
-
-
Lynch, V.J.1
Tanzer, A.2
Wang, Y.3
Leung, F.C.4
Gellersen, B.5
-
78
-
-
0030883022
-
Comparison of bicoid-dependent regulation of hunchback between Musca domestica and Drosophila melanogaster
-
Bonneton F, Shaw PJ, Fazakerley C, Shi M, Dover GA, (1997) Comparison of bicoid-dependent regulation of hunchback between Musca domestica and Drosophila melanogaster. Mech Dev 66: 143-156.
-
(1997)
Mech Dev
, vol.66
, pp. 143-156
-
-
Bonneton, F.1
Shaw, P.J.2
Fazakerley, C.3
Shi, M.4
Dover, G.A.5
-
79
-
-
33845665237
-
Evolution of branched regulatory genetic pathways: Directional selection on pleiotropic loci accelerates Developmental System Drift
-
Johnson NA, Porter AH, (2007) Evolution of branched regulatory genetic pathways: Directional selection on pleiotropic loci accelerates Developmental System Drift. Genetica 129: 57-70.
-
(2007)
Genetica
, vol.129
, pp. 57-70
-
-
Johnson, N.A.1
Porter, A.H.2
-
80
-
-
19344368645
-
Functional evolution of a cis-regulatory module
-
10.1371/journal.pbio.0030093
-
Ludwig MZ, Palsson A, Alekseeva E, Bergman CM, Nathan J, et al. (2005) Functional evolution of a cis-regulatory module. PLoS Biol 3: e93 doi:10.1371/journal.pbio.0030093.
-
(2005)
PLoS Biol
, vol.3
-
-
Ludwig, M.Z.1
Palsson, A.2
Alekseeva, E.3
Bergman, C.M.4
Nathan, J.5
-
81
-
-
56849103052
-
Evolution acts on enhancer organization to fine-tune gradient threshold readouts
-
10.1371/journal.pbio.0060263
-
Crocker J, Tamori Y, Erives A, (2008) Evolution acts on enhancer organization to fine-tune gradient threshold readouts. PLoS Biol 6: e263 doi:10.1371/journal.pbio.0060263.
-
(2008)
PLoS Biol
, vol.6
-
-
Crocker, J.1
Tamori, Y.2
Erives, A.3
-
82
-
-
78649980458
-
Co-evolution of transcriptional silencing proteins and the DNA elements specifying their assembly
-
10.1371/journal.pbio.1000550
-
Zill OA, Scannell D, Teytelman L, Rine J, (2010) Co-evolution of transcriptional silencing proteins and the DNA elements specifying their assembly. PLoS Biol 8: e1000550 doi:10.1371/journal.pbio.1000550.
-
(2010)
PLoS Biol
, vol.8
-
-
Zill, O.A.1
Scannell, D.2
Teytelman, L.3
Rine, J.4
-
83
-
-
0025782652
-
Evidence for cis-acting and trans-acting element coevolution of the 2-microns circle genome in Saccharomyces cerevisiae
-
Xiao W, Pelcher LE, Rank GH, (1991) Evidence for cis-acting and trans-acting element coevolution of the 2-microns circle genome in Saccharomyces cerevisiae. J Mol Evol 32: 145-152.
-
(1991)
J Mol Evol
, vol.32
, pp. 145-152
-
-
Xiao, W.1
Pelcher, L.E.2
Rank, G.H.3
-
84
-
-
17744362691
-
Direct regulation of knot gene expression by ultrabithorax and the evolution of cis-regulatory elements in Drosophila
-
Hersh BM, Carroll SB, (2005) Direct regulation of knot gene expression by ultrabithorax and the evolution of cis-regulatory elements in Drosophila. Development 132: 1567-1577.
-
(2005)
Development
, vol.132
, pp. 1567-1577
-
-
Hersh, B.M.1
Carroll, S.B.2
-
85
-
-
80053064781
-
Two types of cis-trans compensation in the evolution of transcriptional regulation
-
Takahasi KR, Matsuo T, Takano-Shimizu-Kouno T, (2011) Two types of cis-trans compensation in the evolution of transcriptional regulation. Proc Natl Acad Sci U S A 108: 15276-15281.
-
(2011)
Proc Natl Acad Sci U S A
, vol.108
, pp. 15276-15281
-
-
Takahasi, K.R.1
Matsuo, T.2
Takano-Shimizu-Kouno, T.3
-
86
-
-
0035544649
-
Rapid restructuring of bicoid-dependent hunchback promoters within and between Dipteran species: Implications for molecular coevolution
-
McGregor AP, Shaw PJ, Hancock JM, Bopp D, Hediger M, et al. (2001) Rapid restructuring of bicoid-dependent hunchback promoters within and between Dipteran species: Implications for molecular coevolution. Evol Dev 3: 397-407.
-
(2001)
Evol Dev
, vol.3
, pp. 397-407
-
-
McGregor, A.P.1
Shaw, P.J.2
Hancock, J.M.3
Bopp, D.4
Hediger, M.5
-
87
-
-
79951548111
-
Changes in selective effects over time facilitate turnover of enhancer sequences
-
567-U328
-
Bullaughey K, (2011) Changes in selective effects over time facilitate turnover of enhancer sequences. Genetics 187: 567-U328.
-
(2011)
Genetics
, vol.187
-
-
Bullaughey, K.1
-
88
-
-
0032880773
-
Evolutionary alterations of the minimal promoter for notochord-specific brachyury expression in ascidian embryos
-
Takahashi H, Mitani Y, Satoh G, Satoh N, (1999) Evolutionary alterations of the minimal promoter for notochord-specific brachyury expression in ascidian embryos. Development 126: 3725-3734.
-
(1999)
Development
, vol.126
, pp. 3725-3734
-
-
Takahashi, H.1
Mitani, Y.2
Satoh, G.3
Satoh, N.4
-
89
-
-
17744380974
-
Making very similar embryos with divergent genomes: Conservation of regulatory mechanisms of Otx between the ascidians Halocynthia roretzi and Ciona intestinalis
-
Oda-Ishii I, Bertrand V, Matsuo I, Lemaire P, Saiga H, (2005) Making very similar embryos with divergent genomes: Conservation of regulatory mechanisms of Otx between the ascidians Halocynthia roretzi and Ciona intestinalis. Development 132: 1663-1674.
-
(2005)
Development
, vol.132
, pp. 1663-1674
-
-
Oda-Ishii, I.1
Bertrand, V.2
Matsuo, I.3
Lemaire, P.4
Saiga, H.5
-
90
-
-
0032755574
-
Transgressive segregation, adaptation and speciation
-
Rieseberg LH, Archer MA, Wayne RK, (1999) Transgressive segregation, adaptation and speciation. Heredity 83: 363-372.
-
(1999)
Heredity
, vol.83
, pp. 363-372
-
-
Rieseberg, L.H.1
Archer, M.A.2
Wayne, R.K.3
-
91
-
-
0037177625
-
Genetic dissection of transcriptional regulation in budding yeast
-
Brem RB, Yvert G, Clinton R, Kruglyak L, (2002) Genetic dissection of transcriptional regulation in budding yeast. Science 296: 752-755.
-
(2002)
Science
, vol.296
, pp. 752-755
-
-
Brem, R.B.1
Yvert, G.2
Clinton, R.3
Kruglyak, L.4
-
92
-
-
33748175440
-
Gene regulation divergence is a major contributor to the evolution of Dobzhansky-Muller Incompatibilities between species of Drosophila
-
Haerty W, Singh RS, (2006) Gene regulation divergence is a major contributor to the evolution of Dobzhansky-Muller Incompatibilities between species of Drosophila. Mol Biol Evol 23: 1707-1714.
-
(2006)
Mol Biol Evol
, vol.23
, pp. 1707-1714
-
-
Haerty, W.1
Singh, R.S.2
-
93
-
-
54149088214
-
Epistasis-the essential role of gene interactions in the structure and evolution of genetic systems
-
Phillips PC, (2008) Epistasis-the essential role of gene interactions in the structure and evolution of genetic systems. Nature Reviews Genetics 9: 855-867.
-
(2008)
Nature Reviews Genetics
, vol.9
, pp. 855-867
-
-
Phillips, P.C.1
-
94
-
-
77953262416
-
Permissive secondary mutations enable the evolution of influenza oseltamivir resistance
-
Bloom JD, Gong LI, Baltimore D, (2010) Permissive secondary mutations enable the evolution of influenza oseltamivir resistance. Science 328: 1272-1275.
-
(2010)
Science
, vol.328
, pp. 1272-1275
-
-
Bloom, J.D.1
Gong, L.I.2
Baltimore, D.3
-
95
-
-
78449233935
-
Pervasive cryptic epistasis in molecular evolution
-
10.1371/journal.pgen.1001162
-
Lunzer M, Golding GB, Dean AM, (2010) Pervasive cryptic epistasis in molecular evolution. PLoS Genet 6: e1001162 doi:10.1371/journal.pgen.1001162.
-
(2010)
PLoS Genet
, vol.6
-
-
Lunzer, M.1
Golding, G.B.2
Dean, A.M.3
-
96
-
-
33645666942
-
Darwinian evolution can follow only very few mutational paths to fitter proteins
-
Weinreich DM, Delaney NF, DePristo MA, Hartl DL, (2006) Darwinian evolution can follow only very few mutational paths to fitter proteins. Science 312: 111-114.
-
(2006)
Science
, vol.312
, pp. 111-114
-
-
Weinreich, D.M.1
Delaney, N.F.2
DePristo, M.A.3
Hartl, D.L.4
-
97
-
-
70349464621
-
An epistatic ratchet constrains the direction of glucocorticoid receptor evolution
-
515-U78
-
Bridgham JT, Ortlund EA, Thornton JW, (2009) An epistatic ratchet constrains the direction of glucocorticoid receptor evolution. Nature 461: 515-U78.
-
(2009)
Nature
, vol.461
-
-
Bridgham, J.T.1
Ortlund, E.A.2
Thornton, J.W.3
-
98
-
-
33644745138
-
Sexual reproduction selects for robustness and negative epistasis in artificial gene networks
-
Azevedo RBR, Lohaus R, Srinivasan S, Dang KK, Burch CL, (2006) Sexual reproduction selects for robustness and negative epistasis in artificial gene networks. Nature 440: 87-90.
-
(2006)
Nature
, vol.440
, pp. 87-90
-
-
Azevedo, R.B.R.1
Lohaus, R.2
Srinivasan, S.3
Dang, K.K.4
Burch, C.L.5
-
99
-
-
72549097005
-
Epistasis in a quantitative trait captured by a molecular model of transcription factor interactions
-
Gertz J, Gerke JP, Cohen BA, (2010) Epistasis in a quantitative trait captured by a molecular model of transcription factor interactions. Theor Popul Biol 77: 1-5.
-
(2010)
Theor Popul Biol
, vol.77
, pp. 1-5
-
-
Gertz, J.1
Gerke, J.P.2
Cohen, B.A.3
-
100
-
-
78049422907
-
Gene-environment interactions at nucleotide resolution
-
10.1371/journal.pgen.1001144
-
Gerke J, Lorenz K, Ramnarine S, Cohen B, (2010) Gene-environment interactions at nucleotide resolution. PLoS Genet 6: e1001144 doi:10.1371/journal.pgen.1001144.
-
(2010)
PLoS Genet
, vol.6
-
-
Gerke, J.1
Lorenz, K.2
Ramnarine, S.3
Cohen, B.4
-
101
-
-
23644434284
-
Genetic interactions between polymorphisms that affect gene expression in yeast
-
Brem RB, Storey JD, Whittle J, Kruglyak L, (2005) Genetic interactions between polymorphisms that affect gene expression in yeast. Nature 436: 701-703.
-
(2005)
Nature
, vol.436
, pp. 701-703
-
-
Brem, R.B.1
Storey, J.D.2
Whittle, J.3
Kruglyak, L.4
-
102
-
-
34548694067
-
Adaptive variation in beach mice produced by two interacting pigmentation genes
-
10.1371/journal.pbio.0050219
-
Steiner CC, Weber JN, Hoekstra HE, (2007) Adaptive variation in beach mice produced by two interacting pigmentation genes. PLoS Biol 5: e219 doi:10.1371/journal.pbio.0050219.
-
(2007)
PLoS Biol
, vol.5
-
-
Steiner, C.C.1
Weber, J.N.2
Hoekstra, H.E.3
-
103
-
-
71149108321
-
From elements to modules: Regulatory evolution in Ascomycota fungi
-
Wohlbach DJ, Thompson DA, Gasch AP, Regev A, (2009) From elements to modules: Regulatory evolution in Ascomycota fungi. Curr Opin Genet Dev 19: 571-578.
-
(2009)
Curr Opin Genet Dev
, vol.19
, pp. 571-578
-
-
Wohlbach, D.J.1
Thompson, D.A.2
Gasch, A.P.3
Regev, A.4
-
104
-
-
78049233382
-
Redundancy and the evolution of cis-regulatory element multiplicity
-
10.1371/journal.pcbi.1000848
-
Paixao T, Azevedo RBR, (2010) Redundancy and the evolution of cis-regulatory element multiplicity. PLoS Comput Biol 6: e1000848 doi:10.1371/journal.pcbi.1000848.
-
(2010)
PLoS Comput Biol
, vol.6
-
-
Paixao, T.1
Azevedo, R.B.R.2
-
105
-
-
77956530755
-
Evolution of transcription networks-lessons from yeasts
-
Li H, Johnson AD, (2010) Evolution of transcription networks-lessons from yeasts. Current Biology 20: R746-R753.
-
(2010)
Current Biology
, vol.20
-
-
Li, H.1
Johnson, A.D.2
-
106
-
-
79959944339
-
Evolutionary origin of a novel gene expression pattern through co-option of the latent activities of existing regulatory sequences
-
Rebeiz M, Jikomes N, Kassner VA, Carroll SB, (2011) Evolutionary origin of a novel gene expression pattern through co-option of the latent activities of existing regulatory sequences. Proc Natl Acad Sci U S A 108: 10036-10043.
-
(2011)
Proc Natl Acad Sci U S A
, vol.108
, pp. 10036-10043
-
-
Rebeiz, M.1
Jikomes, N.2
Kassner, V.A.3
Carroll, S.B.4
-
107
-
-
75149186552
-
Mutational robustness can facilitate adaptation
-
Draghi JA, Parsons TL, Wagner GP, Plotkin JB, (2010) Mutational robustness can facilitate adaptation. Nature 463: 353-355.
-
(2010)
Nature
, vol.463
, pp. 353-355
-
-
Draghi, J.A.1
Parsons, T.L.2
Wagner, G.P.3
Plotkin, J.B.4
-
108
-
-
0035881655
-
Macro-evolution of the hairy enhancer in Drosophila species
-
Kim J, (2001) Macro-evolution of the hairy enhancer in Drosophila species. J Exp Zool 291: 175-185.
-
(2001)
J Exp Zool
, vol.291
, pp. 175-185
-
-
Kim, J.1
-
109
-
-
0033580401
-
The limits of selection during maize domestication
-
Wang RL, Stec A, Hey J, Lukens L, Doebley J, (1999) The limits of selection during maize domestication. Nature 398: 236-239.
-
(1999)
Nature
, vol.398
, pp. 236-239
-
-
Wang, R.L.1
Stec, A.2
Hey, J.3
Lukens, L.4
Doebley, J.5
-
110
-
-
67651050074
-
Pervasive natural selection in the Drosophila genome?
-
10.1371/journal.pgen.1000495
-
Sella G, Petrov DA, Przeworski M, Andolfatto P, (2009) Pervasive natural selection in the Drosophila genome? PLoS Genet 5: e1000495 doi:10.1371/journal.pgen.1000495.
-
(2009)
PLoS Genet
, vol.5
-
-
Sella, G.1
Petrov, D.A.2
Przeworski, M.3
Andolfatto, P.4
-
111
-
-
33750737061
-
Accelerated evolution of conserved noncoding sequences in humans
-
Prabhakar S, Noonan JP, Paeaebo S, Rubin EM, (2006) Accelerated evolution of conserved noncoding sequences in humans. Science 314: 786-786.
-
(2006)
Science
, vol.314
, pp. 786
-
-
Prabhakar, S.1
Noonan, J.P.2
Paeaebo, S.3
Rubin, E.M.4
-
112
-
-
33750428182
-
Forces shaping the fastest evolving regions in the human genome
-
10.1371/journal.pgen.0020168
-
Pollard KS, Salama SR, King B, Kern AD, Dreszer T, et al. (2006) Forces shaping the fastest evolving regions in the human genome. PLoS Genet 2: e168 doi:10.1371/journal.pgen.0020168.
-
(2006)
PLoS Genet
, vol.2
-
-
Pollard, K.S.1
Salama, S.R.2
King, B.3
Kern, A.D.4
Dreszer, T.5
-
113
-
-
80054973803
-
A high-resolution map of human evolutionary constraint using 29 mammals
-
Lindblad-Toh K, Garber M, Zuk O, Lin MF, Parker BJ, et al. (2011) A high-resolution map of human evolutionary constraint using 29 mammals. Nature 478: 476-482.
-
(2011)
Nature
, vol.478
, pp. 476-482
-
-
Lindblad-Toh, K.1
Garber, M.2
Zuk, O.3
Lin, M.F.4
Parker, B.J.5
-
114
-
-
0028238895
-
Pha-1, a selectable marker for gene-transfer in C. elegans
-
Granato M, Schnabel H, Schnabel R, (1994) pha-1, a selectable marker for gene-transfer in C. elegans. Nucleic Acids Res 22: 1762-1763.
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 1762-1763
-
-
Granato, M.1
Schnabel, H.2
Schnabel, R.3
-
115
-
-
67650722550
-
Transformation and microinjection
-
ed. The C. elegans Research Community, WormBook, doi/10.1895/wormbook.1.108.1,Accessed 2012 Aug 14.
-
Evans TC (2006) Transformation and microinjection. In: WormBook, ed. The C. elegans Research Community, WormBook, doi/10.1895/wormbook.1.108.1, http://www.wormbook.org. Accessed 2012 Aug 14.
-
(2006)
WormBook
-
-
Evans, T.C.1
|