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Volumn 132, Issue 7, 2005, Pages 1567-1577

Direct regulation of knot gene expression by Ultrabithorax and the evolution of cis-regulatory elements in Drosophila

Author keywords

Cis regulatory element; Drosophila; Evolution; Hox genes; Ultrabithorax

Indexed keywords

CIS ACTING ELEMENT; HOX PROTEIN; REGULATOR PROTEIN;

EID: 17744362691     PISSN: 09501991     EISSN: None     Source Type: Journal    
DOI: 10.1242/dev.01737     Document Type: Article
Times cited : (75)

References (48)
  • 1
    • 0031964860 scopus 로고    scopus 로고
    • Functional and regulatory interactions between Hox and extradenticle genes
    • Azpiazu, N. and Morata, G. (1998). Functional and regulatory interactions between Hox and extradenticle genes. Genes Dev. 12, 261-273.
    • (1998) Genes Dev. , vol.12 , pp. 261-273
    • Azpiazu, N.1    Morata, G.2
  • 2
    • 0033946836 scopus 로고    scopus 로고
    • Function and regulation of homothorax in the wing imaginal disc of Drosophila
    • Azpiazu, N. and Morata, G. (2000). Function and regulation of homothorax in the wing imaginal disc of Drosophila. Development 127, 2685-2693.
    • (2000) Development , vol.127 , pp. 2685-2693
    • Azpiazu, N.1    Morata, G.2
  • 3
    • 0036333329 scopus 로고    scopus 로고
    • Abdominal A specifies one cell type in Drosophila by regulating one principal target gene
    • Brodu, V., Elstob, P. R. and Gould, A. P. (2002). abdominal A specifies one cell type in Drosophila by regulating one principal target gene. Development 129, 2957-2963.
    • (2002) Development , vol.129 , pp. 2957-2963
    • Brodu, V.1    Elstob, P.R.2    Gould, A.P.3
  • 4
    • 0028173682 scopus 로고
    • Direct regulation of decapentaplegic by Ultrabithorax and its role in Drosophila midgut morphogenesis
    • Capovilla, M., Brandt, M. and Botas, J. (1994). Direct regulation of decapentaplegic by Ultrabithorax and its role in Drosophila midgut morphogenesis. Cell 76, 461-475.
    • (1994) Cell , vol.76 , pp. 461-475
    • Capovilla, M.1    Brandt, M.2    Botas, J.3
  • 5
    • 0030986189 scopus 로고    scopus 로고
    • Switching the in vivo specificity of a minimal Hox-responsive element
    • Chan, S. K., Ryoo, H. D., Gould, A., Krumlauf, R. and Mann, R. S. (1997). Switching the in vivo specificity of a minimal Hox-responsive element. Development 124, 2007-2014.
    • (1997) Development , vol.124 , pp. 2007-2014
    • Chan, S.K.1    Ryoo, H.D.2    Gould, A.3    Krumlauf, R.4    Mann, R.S.5
  • 7
    • 0032933238 scopus 로고    scopus 로고
    • Requirement for the Drosophila COE transcription factor Collier in formation of an embryonic muscle: Transcriptional response to notch signalling
    • Crozatier, M. and Vincent, A. (1999). Requirement for the Drosophila COE transcription factor Collier in formation of an embryonic muscle: transcriptional response to notch signalling. Development 126, 1495-1504.
    • (1999) Development , vol.126 , pp. 1495-1504
    • Crozatier, M.1    Vincent, A.2
  • 8
    • 0032751716 scopus 로고    scopus 로고
    • Head versus trunk patterning in the Drosophila embryo; collier requirement for formation of the intercalary segment
    • Crozatier, M., Valle, D., Dubois, L., Ibnsouda, S. and Vincent, A. (1999). Head versus trunk patterning in the Drosophila embryo; collier requirement for formation of the intercalary segment. Development 126, 4385-4394.
    • (1999) Development , vol.126 , pp. 4385-4394
    • Crozatier, M.1    Valle, D.2    Dubois, L.3    Ibnsouda, S.4    Vincent, A.5
  • 9
    • 19344375661 scopus 로고    scopus 로고
    • Cellular immune response to parasitization in Drosophila requires the EBF orthologue Collier
    • Crozatier, M., Ubeda, J. M., Vincent, A. and Meister, M. (2004). Cellular immune response to parasitization in Drosophila requires the EBF orthologue Collier. PLoS Biol. 2, E196.
    • (2004) PLoS Biol. , vol.2
    • Crozatier, M.1    Ubeda, J.M.2    Vincent, A.3    Meister, M.4
  • 10
    • 0027358721 scopus 로고
    • Disruption of the Hoxd-13 gene induces localized heterochrony leading to mice with neotenic limbs
    • Dolle, P., Dierich, A., LeMeur, M., Schimmang, T., Schuhbaur, B., Chambon, P. and Duboule, D. (1993). Disruption of the Hoxd-13 gene induces localized heterochrony leading to mice with neotenic limbs. Cell 75, 431-441.
    • (1993) Cell , vol.75 , pp. 431-441
    • Dolle, P.1    Dierich, A.2    LeMeur, M.3    Schimmang, T.4    Schuhbaur, B.5    Chambon, P.6    Duboule, D.7
  • 11
    • 0025764309 scopus 로고
    • Optimal DNA sequence recognition by the Ultrabithorax homeodomain of Drosophila
    • Ekker, S. C., Young, K. E., von Kessler, D. P. and Beachy, P. A. (1991). Optimal DNA sequence recognition by the Ultrabithorax homeodomain of Drosophila. EMBO J. 10, 1179-1186.
    • (1991) EMBO J. , vol.10 , pp. 1179-1186
    • Ekker, S.C.1    Young, K.E.2    von Kessler, D.P.3    Beachy, P.A.4
  • 12
    • 0036337125 scopus 로고    scopus 로고
    • Hox repression of a target gene: Extradenticle-independent, additive action through multiple monomer binding sites
    • Galant, R., Walsh, C. M. and Carroll, S. B. (2002). Hox repression of a target gene: extradenticle-independent, additive action through multiple monomer binding sites. Development 129, 3115-3126.
    • (2002) Development , vol.129 , pp. 3115-3126
    • Galant, R.1    Walsh, C.M.2    Carroll, S.B.3
  • 13
    • 0036774750 scopus 로고    scopus 로고
    • Specificity of Distalless repression and limb primordia development by abdominal Hox proteins
    • Gebelein, B., Culi, J., Ryoo, H. D., Zhang, W. and Mann, R. S. (2002). Specificity of Distalless repression and limb primordia development by abdominal Hox proteins. Dev. Cell 3, 487-498.
    • (2002) Dev. Cell , vol.3 , pp. 487-498
    • Gebelein, B.1    Culi, J.2    Ryoo, H.D.3    Zhang, W.4    Mann, R.S.5
  • 14
    • 6044243723 scopus 로고    scopus 로고
    • Direct integration of Hox and segmentation gene inputs during Drosophila development
    • Gebelein, B., McKay, D. J. and Mann, R. S. (2004). Direct integration of Hox and segmentation gene inputs during Drosophila development. Nature 431, 653-659.
    • (2004) Nature , vol.431 , pp. 653-659
    • Gebelein, B.1    McKay, D.J.2    Mann, R.S.3
  • 15
    • 0032005387 scopus 로고    scopus 로고
    • Shaping animal body plans in development and evolution by modulation of Hox expression patterns
    • Gellon, G. and McGinnis, W. (1998). Shaping animal body plans in development and evolution by modulation of Hox expression patterns. BioEssays 20, 116-125.
    • (1998) BioEssays , vol.20 , pp. 116-125
    • Gellon, G.1    McGinnis, W.2
  • 17
    • 0033026626 scopus 로고    scopus 로고
    • High sequence turnover in the regulatory regions of the developmental gene hunchback in insects
    • Hancock, J., Shaw, P., Bonneton, F. and Dover, G. (1999). High sequence turnover in the regulatory regions of the developmental gene hunchback in insects. Mol. Biol. Evol. 16, 253-265.
    • (1999) Mol. Biol. Evol. , vol.16 , pp. 253-265
    • Hancock, J.1    Shaw, P.2    Bonneton, F.3    Dover, G.4
  • 18
    • 6944252023 scopus 로고    scopus 로고
    • HOXA13 regulates the expression of bone morphogenetic proteins 2 and 7 to control distal limb morphogenesis
    • Knosp, W. M., Scott, V., Bachinger, H. P. and Stadler, H. S. (2004). HOXA13 regulates the expression of bone morphogenetic proteins 2 and 7 to control distal limb morphogenesis. Development 131, 4581-4592.
    • (2004) Development , vol.131 , pp. 4581-4592
    • Knosp, W.M.1    Scott, V.2    Bachinger, H.P.3    Stadler, H.S.4
  • 19
    • 0033536061 scopus 로고    scopus 로고
    • Activity regulation of Hox proteins, a mechanism for altering functional specificity in development and evolution
    • Li, X. and McGinnis, W. (1999). Activity regulation of Hox proteins, a mechanism for altering functional specificity in development and evolution. Proc. Natl. Acad. Sci. USA 96, 6802-6807.
    • (1999) Proc. Natl. Acad. Sci. USA , vol.96 , pp. 6802-6807
    • Li, X.1    McGinnis, W.2
  • 20
    • 0033377879 scopus 로고    scopus 로고
    • A sequence motif distinct from Hox binding sites controls the specificity of a Hox response element
    • Li, X., Veraksa, A. and McGinnis, W. (1999). A sequence motif distinct from Hox binding sites controls the specificity of a Hox response element. Development 126, 5581-5589.
    • (1999) Development , vol.126 , pp. 5581-5589
    • Li, X.1    Veraksa, A.2    McGinnis, W.3
  • 21
    • 0037162712 scopus 로고    scopus 로고
    • The Drosophila Hox gene deformed sculpts head morphology via direct regulation of the apoptosis activator reaper
    • Lohmann, I., McGinnis, N., Bodmer, M. and McGinnis, W. (2002). The Drosophila Hox gene deformed sculpts head morphology via direct regulation of the apoptosis activator reaper. Cell 110 457-466.
    • (2002) Cell , vol.110 , pp. 457-466
    • Lohmann, I.1    McGinnis, N.2    Bodmer, M.3    McGinnis, W.4
  • 22
    • 0031889035 scopus 로고    scopus 로고
    • Functional analysis of eve stripe 2 enhancer evolution in Drosophila: Rules governing conservation and change
    • Ludwig, M., Patel, N. and Kreitman, M. (1998). Functional analysis of eve stripe 2 enhancer evolution in Drosophila: rules governing conservation and change. Development 125, 949-958.
    • (1998) Development , vol.125 , pp. 949-958
    • Ludwig, M.1    Patel, N.2    Kreitman, M.3
  • 23
    • 0034598832 scopus 로고    scopus 로고
    • Evidence for stabilizing selection in a eukaryotic enhancer element
    • Ludwig, M. Z., Bergman, C., Patel, N. H. and Kreitman, M. (2000). Evidence for stabilizing selection in a eukaryotic enhancer element. Nature 403, 564-567.
    • (2000) Nature , vol.403 , pp. 564-567
    • Ludwig, M.Z.1    Bergman, C.2    Patel, N.H.3    Kreitman, M.4
  • 24
    • 0036777881 scopus 로고    scopus 로고
    • Molecular mechanisms of selector gene function and evolution
    • Mann, R. S. and Carroll, S. B. (2002). Molecular mechanisms of selector gene function and evolution. Curr. Opin. Genet. Dev. 12, 592-600.
    • (2002) Curr. Opin. Genet. Dev. , vol.12 , pp. 592-600
    • Mann, R.S.1    Carroll, S.B.2
  • 25
    • 0034924629 scopus 로고    scopus 로고
    • A HOX complex, a repressor element and a 50 bp sequence confer regional specificity to a DPP-responsive enhancer
    • Marty, T., Vigano, M. A., Ribeiro, C., Nussbaumer, U., Grieder, N. C. and Affolter, M. (2001). A HOX complex, a repressor element and a 50 bp sequence confer regional specificity to a DPP-responsive enhancer. Development 128, 2833-2845.
    • (2001) Development , vol.128 , pp. 2833-2845
    • Marty, T.1    Vigano, M.A.2    Ribeiro, C.3    Nussbaumer, U.4    Grieder, N.C.5    Affolter, M.6
  • 26
    • 0018846636 scopus 로고
    • Sequencing end-labeled DNA with base-specific chemical cleavages
    • Maxam, A. M. and Gilbert, W. (1980). Sequencing end-labeled DNA with base-specific chemical cleavages. Methods Enzymol. 65, 499-560.
    • (1980) Methods Enzymol. , vol.65 , pp. 499-560
    • Maxam, A.M.1    Gilbert, W.2
  • 27
    • 0035544649 scopus 로고    scopus 로고
    • Rapid restructuring of bicoid-dependent hunchback promoters within and between Dipteran species: Implications for molecular coevolution
    • McGregor, A. P., Shaw, P. J., Hancock, J. M., Bopp, D., Hediger, M., Wratten, N. S. and Dover, G. A. (2001). Rapid restructuring of bicoid-dependent hunchback promoters within and between Dipteran species: implications for molecular coevolution. Evol. Dev. 3, 397-407.
    • (2001) Evol. Dev. , vol.3 , pp. 397-407
    • McGregor, A.P.1    Shaw, P.J.2    Hancock, J.M.3    Bopp, D.4    Hediger, M.5    Wratten, N.S.6    Dover, G.A.7
  • 28
    • 0033967951 scopus 로고    scopus 로고
    • Activation of knot (kn) specifies the 3-4 intervein region in the Drosophila wing
    • Mohler, J., Seecoomar, M., Agarwal, S., Bier, E. and Hsai, J. (2000). Activation of knot (kn) specifies the 3-4 intervein region in the Drosophila wing. Development 127, 55-63.
    • (2000) Development , vol.127 , pp. 55-63
    • Mohler, J.1    Seecoomar, M.2    Agarwal, S.3    Bier, E.4    Hsai, J.5
  • 29
    • 0027258853 scopus 로고
    • Drosophila glial architecture and development - Analysis using a collection of new cell-specific markers
    • Nelson, H. B. and Laughon, A. (1993). Drosophila glial architecture and development - analysis using a collection of new cell-specific markers. Roux's Arch. Dev. Biol. 202, 341-354.
    • (1993) Roux's Arch. Dev. Biol. , vol.202 , pp. 341-354
    • Nelson, H.B.1    Laughon, A.2
  • 31
    • 0036570983 scopus 로고    scopus 로고
    • Hox gene control of segment-specific bristle patterns in Drosophila
    • Rozowski, M. and Akam, M. (2002). Hox gene control of segment-specific bristle patterns in Drosophila. Genes Dev. 16 1150-1162.
    • (2002) Genes Dev. , vol.16 , pp. 1150-1162
    • Rozowski, M.1    Akam, M.2
  • 32
    • 0008231153 scopus 로고    scopus 로고
    • The control of trunk Hox specificity and activity by Extradenticle
    • Ryoo, H. D. and Mann, R. S. (1999). The control of trunk Hox specificity and activity by Extradenticle. Genes Dev. 13, 1704-1716.
    • (1999) Genes Dev. , vol.13 , pp. 1704-1716
    • Ryoo, H.D.1    Mann, R.S.2
  • 33
    • 0033404512 scopus 로고    scopus 로고
    • Regulation of Hox target genes by a DNA bound Homothorax/Hox/Extradenticle complex
    • Ryoo, H. D., Marty, T., Casares, F., Affolter, M. and Mann, R. S. (1999). Regulation of Hox target genes by a DNA bound Homothorax/Hox/Extradenticle complex. Development 126, 5137-5148.
    • (1999) Development , vol.126 , pp. 5137-5148
    • Ryoo, H.D.1    Marty, T.2    Casares, F.3    Affolter, M.4    Mann, R.S.5
  • 34
    • 0029895363 scopus 로고    scopus 로고
    • A C. elegans Hox gene switches on, off, on and off again to regulate proliferation, differentiation and morphogenesis
    • Salser, S. and Kenyon, C. (1996). A C. elegans Hox gene switches on, off, on and off again to regulate proliferation, differentiation and morphogenesis. Development 122, 1651-1661.
    • (1996) Development , vol.122 , pp. 1651-1661
    • Salser, S.1    Kenyon, C.2
  • 35
    • 0036585595 scopus 로고    scopus 로고
    • Phylogeny of a paradigm lineage: The Drosophila melanogaster species group (Diptera: Drosophilidae)
    • Schawaroch, V. (2002). Phylogeny of a paradigm lineage: The Drosophila melanogaster species group (Diptera: Drosophilidae). Biol. J. Linnean Soc. 76, 21-37.
    • (2002) Biol. J. Linnean Soc. , vol.76 , pp. 21-37
    • Schawaroch, V.1
  • 36
    • 0034000964 scopus 로고    scopus 로고
    • Knot is required for the hypopharyngeal lobe and its derivatives in the Drosophila embryo
    • Seecoomar, M., Agarwal, S., Vani, K., Yang, G. and Mohler, J. (2000). knot is required for the hypopharyngeal lobe and its derivatives in the Drosophila embryo. Mech. Dev. 91, 209-215.
    • (2000) Mech. Dev. , vol.91 , pp. 209-215
    • Seecoomar, M.1    Agarwal, S.2    Vani, K.3    Yang, G.4    Mohler, J.5
  • 37
    • 0035992352 scopus 로고    scopus 로고
    • Coevolution in bicoid-dependent promoters and the inception of regulatory incompatibilities among species of higher Diptera
    • Shaw, P. J., Wratten, N. S., McGregor, A. P. and Dover, G. A. (2002). Coevolution in bicoid-dependent promoters and the inception of regulatory incompatibilities among species of higher Diptera. Evol. Dev. 4, 265-277.
    • (2002) Evol. Dev. , vol.4 , pp. 265-277
    • Shaw, P.J.1    Wratten, N.S.2    McGregor, A.P.3    Dover, G.A.4
  • 38
    • 0037115467 scopus 로고    scopus 로고
    • LIN-39/Hox triggers cell division and represses EFF-1/fusogen-dependent vulval cell fusion
    • Shemer, G. and Podbilewicz, B. (2002). LIN-39/Hox triggers cell division and represses EFF-1/fusogen-dependent vulval cell fusion. Genes Dev. 16, 3136-3141.
    • (2002) Genes Dev. , vol.16 , pp. 3136-3141
    • Shemer, G.1    Podbilewicz, B.2
  • 40
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson, J. D., Higgins, D. G. and Gibson, T. J. (1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22, 4673-4680.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 41
    • 0026492021 scopus 로고
    • Homeotic genes of the Bithorax complex repress limb development in the abdomen of the Drosophila embryo through the target gene Distal-less
    • Vachon, G., Cohen, B., Pfeifle, C., McGuffin, M. E., Botas, J. and Cohen, S. M. (1992). Homeotic genes of the Bithorax complex repress limb development in the abdomen of the Drosophila embryo through the target gene Distal-less. Cell 71, 437-450.
    • (1992) Cell , vol.71 , pp. 437-450
    • Vachon, G.1    Cohen, B.2    Pfeifle, C.3    McGuffin, M.E.4    Botas, J.5    Cohen, S.M.6
  • 42
    • 0033578020 scopus 로고    scopus 로고
    • The COE transcription factor Collier is a mediator of short-range Hedgehog-induced patterning of the Drosophila wing
    • Vervoort, M., Crozatier, M., Valle, D. and Vincent, A. (1999). The COE transcription factor Collier is a mediator of short-range Hedgehog-induced patterning of the Drosophila wing. Curr. Biol. 9, 632-639.
    • (1999) Curr. Biol. , vol.9 , pp. 632-639
    • Vervoort, M.1    Crozatier, M.2    Valle, D.3    Vincent, A.4
  • 43
    • 0030975697 scopus 로고    scopus 로고
    • Hedgehog signaling regulates transcription through cubitus interruptus, a sequence-specific DNA binding protein
    • Von Ohlen, T., Lessing, D., Nusse, R. and Hooper, J. E. (1997). Hedgehog signaling regulates transcription through cubitus interruptus, a sequence-specific DNA binding protein. Proc. Natl. Acad. Sci. USA 94, 2404-2409.
    • (1997) Proc. Natl. Acad. Sci. USA , vol.94 , pp. 2404-2409
    • Von Ohlen, T.1    Lessing, D.2    Nusse, R.3    Hooper, J.E.4
  • 45
    • 0032523883 scopus 로고    scopus 로고
    • Ultrabithorax regulates genes at several levels of the wing-patterning hierarchy to shape the development of the Drosophila haltere
    • Weatherbee, S. D., Halder, G., Kim, J., Hudson, A. and Carroll, S. (1998). Ultrabithorax regulates genes at several levels of the wing-patterning hierarchy to shape the development of the Drosophila haltere. Genes Dev. 12, 1474-1482.
    • (1998) Genes Dev. , vol.12 , pp. 1474-1482
    • Weatherbee, S.D.1    Halder, G.2    Kim, J.3    Hudson, A.4    Carroll, S.5
  • 47
    • 0036608206 scopus 로고    scopus 로고
    • Patchy interspecific sequence similarities efficiently identify positive cis-regulatory elements in the sea urchin
    • Yuh, C. H., Brown, C. T., Livi, C. B., Rowen, L., Clarke, P. J. and Davidson, E. H. (2002). Patchy interspecific sequence similarities efficiently identify positive cis-regulatory elements in the sea urchin. Dev. Biol. 246, 148-161.
    • (2002) Dev. Biol. , vol.246 , pp. 148-161
    • Yuh, C.H.1    Brown, C.T.2    Livi, C.B.3    Rowen, L.4    Clarke, P.J.5    Davidson, E.H.6
  • 48
    • 0027283727 scopus 로고
    • Zinc fingers in sex determination: Only one of the two C. elegans Tra-1 proteins binds DNA in vitro
    • Zarkower, D. and Hodgkin, J. (1993). Zinc fingers in sex determination: only one of the two C. elegans Tra-1 proteins binds DNA in vitro. Nucleic Acids Res. 21, 3691-3698.
    • (1993) Nucleic Acids Res. , vol.21 , pp. 3691-3698
    • Zarkower, D.1    Hodgkin, J.2


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