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Volumn 29, Issue 10, 2012, Pages 3161-3168

Positive selection on the gene RNASEL: Correlation between patterns of evolution and function

Author keywords

positive selection; prostate cancer; RNASEL

Indexed keywords

ANKYRIN; PROTEIN RNASEL; RIBONUCLEASE; UNCLASSIFIED DRUG; VIRUS RNA;

EID: 84866931526     PISSN: 07374038     EISSN: 15371719     Source Type: Journal    
DOI: 10.1093/molbev/mss123     Document Type: Article
Times cited : (8)

References (47)
  • 1
    • 0032900678 scopus 로고    scopus 로고
    • Median-joining networks for inferring intraspecific phylogenies
    • Bandelt HJ, Forster P, Rohl A. 1999. Median-joining networks for inferring intraspecific phylogenies. Mol Biol Evol. 16:37-48. (Pubitemid 29024937)
    • (1999) Molecular Biology and Evolution , vol.16 , Issue.1 , pp. 37-48
    • Bandelt, H.-J.1    Forster, P.2    Rohl, A.3
  • 2
    • 2442713832 scopus 로고    scopus 로고
    • GeneWise and Genomewise
    • DOI 10.1101/gr.1865504
    • Birney E, Clamp M, Durbin R. 2004. GeneWise and genomewise. Genome Res. 14:988-995. (Pubitemid 38660520)
    • (2004) Genome Research , vol.14 , Issue.5 , pp. 988-995
    • Birney, E.1    Clamp, M.2    Durbin, R.3
  • 8
    • 0020484056 scopus 로고
    • Distribution of the ppp (A2'p) nA-binding protein and interferon-related enzymes in animals, plants, and lower organisms
    • Cayley PJ, White RF, Antoniw JF, Walesby NJ, Kerr IM. 1982. Distribution of the ppp (A2'p) nA-binding protein and interferon-related enzymes in animals, plants, and lower organisms. Biochem Biophys Res Commun. 108:1243.
    • (1982) Biochem Biophys Res Commun , vol.108 , pp. 1243
    • Cayley, P.J.1    White, R.F.2    Antoniw, J.F.3    Walesby, N.J.4    Kerr, I.M.5
  • 11
    • 0033911640 scopus 로고    scopus 로고
    • Hitchhiking under positive Darwinian selection
    • Fay JC, Wu CI. 2000. Hitchhiking under positive Darwinian selection. Genetics 155:1405-1413. (Pubitemid 30463447)
    • (2000) Genetics , vol.155 , Issue.3 , pp. 1405-1413
    • Fay, J.C.1    Wu, C.-I.2
  • 13
    • 0030821992 scopus 로고    scopus 로고
    • Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection
    • Fu YX. 1997. Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection. Genetics 147:915-925.
    • (1997) Genetics , vol.147 , pp. 915-925
    • Fu, Y.X.1
  • 14
    • 0027453041 scopus 로고
    • Statistical tests of neutrality of mutations
    • Fu YX, Li WH. 1993. Statistical tests of neutrality of mutations. Genetics 133:693-709.
    • (1993) Genetics , vol.133 , pp. 693-709
    • Fu, Y.X.1    Li, W.H.2
  • 15
    • 0242578620 scopus 로고    scopus 로고
    • A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood
    • DOI 10.1080/10635150390235520
    • Guindon S, Gascuel O. 2003. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol. 52:696-704. (Pubitemid 37365050)
    • (2003) Systematic Biology , vol.52 , Issue.5 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 16
    • 0027270867 scopus 로고
    • A dominant negative mutant of 2-5A-dependent RNase suppresses antiproliferative and antiviral effects of interferon
    • Hassel BA, Zhou A, Sotomayor C, Maran A, Silverman RH. 1993. A dominant negative mutant of 2-5A-dependent RNase suppresses antiproliferative and antiviral effects of interferon. EMBO J. 12:3297.
    • (1993) EMBO J , vol.12 , pp. 3297
    • Hassel, B.A.1    Zhou, A.2    Sotomayor, C.3    Maran, A.4    Silverman, R.H.5
  • 17
    • 70449652525 scopus 로고    scopus 로고
    • Soy food consumption and risk of prostate cancer: A meta-analysis of observational studies
    • Hwang YW, Kim SY, Jee SH, Kim YN, Nam CM. 2009. Soy food consumption and risk of prostate cancer: a meta-analysis of observational studies. Nutr Cancer. 61:598-606.
    • (2009) Nutr Cancer , vol.61 , pp. 598-606
    • Hwang, Y.W.1    Kim, S.Y.2    Jee, S.H.3    Kim, Y.N.4    Nam, C.M.5
  • 18
    • 84866614734 scopus 로고    scopus 로고
    • East meets West: Ethnic differences in prostate cancer epidemiology between East Asians and Caucasians
    • Advance Access published November 15, 2011 doi:10. 5732/cjc. 011. 10324
    • Kimura T. 2011. East meets West: ethnic differences in prostate cancer epidemiology between East Asians and Caucasians. Chin J Cancer. Advance Access published November 15, 2011, doi:10. 5732/cjc. 011. 10324
    • (2011) Chin J Cancer
    • Kimura, T.1
  • 20
    • 33750289419 scopus 로고    scopus 로고
    • RNASEL gene polymorphisms and the risk of prostate cancer: A meta-analysis
    • DOI 10.1158/1078-0432.CCR-05-2799
    • Li H, Tai BC. 2006. RNASEL gene polymorphisms and the risk of prostate cancer: a meta-analysis. Clin Cancer Res. 12:5713-5719. (Pubitemid 44629600)
    • (2006) Clinical Cancer Research , vol.12 , Issue.19 , pp. 5713-5719
    • Li, H.1    Tai, B.C.2
  • 23
    • 0026428610 scopus 로고
    • Adaptive protein evolution at the Adh locus in Drosophila
    • McDonald JH, Kreitman M. 1991. Adaptive protein evolution at the Adh locus in Drosophila. Nature 351:652-654. (Pubitemid 21896661)
    • (1991) Nature , vol.351 , Issue.6328 , pp. 652-654
    • McDonald, J.H.1    Kreitman, M.2
  • 24
    • 0043122919 scopus 로고    scopus 로고
    • SIFT: Predicting amino acid changes that affect protein function
    • DOI 10.1093/nar/gkg509
    • Ng PC, Henikoff S. 2003. SIFT: predicting amino acid changes that affect protein function. Nucleic Acids Res. 31:3812-3814. (Pubitemid 37442253)
    • (2003) Nucleic Acids Research , vol.31 , Issue.13 , pp. 3812-3814
    • Ng, P.C.1    Henikoff, S.2
  • 25
    • 0031972161 scopus 로고    scopus 로고
    • Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene
    • Nielsen R, Yang Z. 1998. Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene. Genetics 148:929-936. (Pubitemid 28169008)
    • (1998) Genetics , vol.148 , Issue.3 , pp. 929-936
    • Nielsen, R.1    Yang, Z.2
  • 26
    • 0036713510 scopus 로고    scopus 로고
    • Human non-synonymous SNPs: Server and survey
    • Ramensky V, Bork P, Sunyaev S. 2002. Human non-synonymous SNPs: server and survey. Nucleic Acids Res. 30:3894-3900. (Pubitemid 35012462)
    • (2002) Nucleic Acids Research , vol.30 , Issue.17 , pp. 3894-3900
    • Ramensky, V.1    Bork, P.2    Sunyaev, S.3
  • 27
    • 56049121918 scopus 로고    scopus 로고
    • Association of HPC2/ELAC2 and RNASEL non-synonymous variants with prostate cancer risk in African American familial and sporadic cases
    • (14 co-authors)
    • Robbins CM, Hernandez W, Ahaghotu C, et al. (14 co-authors). 2008. Association of HPC2/ELAC2 and RNASEL non-synonymous variants with prostate cancer risk in African American familial and sporadic cases. Prostate 68:1790-1797.
    • (2008) Prostate , vol.68 , pp. 1790-1797
    • Robbins, C.M.1    Hernandez, W.2    Ahaghotu, C.3
  • 29
    • 0347513220 scopus 로고    scopus 로고
    • DnaSP, DNA polymorphism analyses by the coalescent and other methods
    • DOI 10.1093/bioinformatics/btg359
    • Rozas J, Sanchez-DelBarrio JC, Messeguer X, Rozas R. 2003. DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics 19:2496-2497. (Pubitemid 38016658)
    • (2003) Bioinformatics , vol.19 , Issue.18 , pp. 2496-2497
    • Rozas, J.1    Sanchez-DelBarrio, J.C.2    Messeguer, X.3    Rozas, R.4
  • 31
    • 27544497650 scopus 로고    scopus 로고
    • Calibrating a coalescent simulation of human genome sequence variation
    • DOI 10.1101/gr.3709305
    • Schaffner SF, Foo C, Gabriel S, Reich D, Daly MJ, Altshuler D. 2005. Calibrating a coalescent simulation of human genome sequence variation. Genome Res. 15:1576-1583. (Pubitemid 41545011)
    • (2005) Genome Research , vol.15 , Issue.11 , pp. 1576-1583
    • Schaffner, S.F.1    Foo, C.2    Gabriel, S.3    Reich, D.4    Daly, M.J.5    Altshuler, D.6
  • 32
    • 0037465342 scopus 로고    scopus 로고
    • Implications for RNase L in prostate cancer biology
    • DOI 10.1021/bi027147i
    • Silverman RH. 2003. Implications for RNase L in prostate cancer biology. Biochemistry 42:1805-1812. (Pubitemid 36258654)
    • (2003) Biochemistry , vol.42 , Issue.7 , pp. 1805-1812
    • Silverman, R.H.1
  • 34
    • 0242691208 scopus 로고    scopus 로고
    • A Comparison of Bayesian Methods for Haplotype Reconstruction from Population Genotype Data
    • DOI 10.1086/379378
    • Stephens M, Donnelly P. 2003. A comparison of Bayesian methods for haplotype reconstruction from population genotype data. Am J Hum Genet. 73:1162-1169. (Pubitemid 37414228)
    • (2003) American Journal of Human Genetics , vol.73 , Issue.5 , pp. 1162-1169
    • Stephens, M.1    Donnelly, P.2
  • 35
    • 0035071957 scopus 로고    scopus 로고
    • A new statistical method for haplotype reconstruction from population data
    • DOI 10.1086/319501
    • Stephens M, Smith NJ, Donnelly P. 2001. A new statistical method for haplotype reconstruction from population data. Am J Hum Genet. 68:978-989. (Pubitemid 32289743)
    • (2001) American Journal of Human Genetics , vol.68 , Issue.4 , pp. 978-989
    • Stephens, M.1    Smith, N.J.2    Donnelly, P.3
  • 36
    • 42649094450 scopus 로고    scopus 로고
    • Molecular evolution of the prostate cancer susceptibility locus RNASEL: Evidence for positive selection
    • Summers K, Crespi B. 2008. Molecular evolution of the prostate cancer susceptibility locus RNASEL: evidence for positive selection. Infect Genet Evol. 8:297-301.
    • (2008) Infect Genet Evol , vol.8 , pp. 297-301
    • Summers, K.1    Crespi, B.2
  • 37
    • 0024313579 scopus 로고
    • Statistical method for testing the neutral mutation hypothesis by DNA polymorphism
    • Tajima F. 1989. Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123:585-595. (Pubitemid 19274682)
    • (1989) Genetics , vol.123 , Issue.3 , pp. 585-595
    • Tajima, F.1
  • 38
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
    • DOI 10.1093/molbev/msm092
    • Tamura K, Dudley J, Nei M, Kumar S. 2007. MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4. 0. Mol Biol Evol. 24:1596-1599. (Pubitemid 47236692)
    • (2007) Molecular Biology and Evolution , vol.24 , Issue.8 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 39
    • 5444236355 scopus 로고    scopus 로고
    • Positive selection on the human genome
    • Vallender EJ, Lahn BT. 2004. Positive selection on the human genome. Hum Mol Genet. 13:245-254.
    • (2004) Hum Mol Genet , vol.13 , pp. 245-254
    • Vallender, E.J.1    Lahn, B.T.2
  • 40
    • 0002027029 scopus 로고
    • A new evolutionary law
    • Van Valen L. 1973. A new evolutionary law. Evol Theory. 1:1-30.
    • (1973) Evol Theory , vol.1 , pp. 1-30
    • Van Valen, L.1
  • 41
    • 63649084874 scopus 로고    scopus 로고
    • Soy consumption and prostate cancer risk in men: A revisit of a meta-analysis
    • Yan L, Spitznagel EL. 2009. Soy consumption and prostate cancer risk in men: a revisit of a meta-analysis. Am J Clin Nutr. 89:1155-1163.
    • (2009) Am J Clin Nutr , vol.89 , pp. 1155-1163
    • Yan, L.1    Spitznagel, E.L.2
  • 42
    • 0030683599 scopus 로고    scopus 로고
    • PAML: A program package for phylogenetic analysis by maximum likelihood
    • Yang Z. 1997. PAML: a program package for phylogenetic analysis by maximum likelihood. Comput Appl Biosci. 13:555-556. (Pubitemid 27480216)
    • (1997) Computer Applications in the Biosciences , vol.13 , Issue.5 , pp. 555-556
    • Yang, Z.1
  • 43
    • 0033692959 scopus 로고    scopus 로고
    • Maximum likelihood estimation on large phylogenies and analysis of adaptive evolution in human influenza virus A
    • Yang Z. 2000. Maximum likelihood estimation on large phylogenies and analysis of adaptive evolution in human influenza virus A. J Mol Evol. 51:423-432.
    • (2000) J Mol Evol , vol.51 , pp. 423-432
    • Yang, Z.1
  • 44
    • 16344378246 scopus 로고    scopus 로고
    • Bayes empirical Bayes inference of amino acid sites under positive selection
    • DOI 10.1093/molbev/msi097
    • Yang Z, Wong WSW, Nielsen R. 2005. Bayes empirical bayes inference of amino acid sites under positive selection. Mol Biol Evol. 22:1107-1118. (Pubitemid 40471423)
    • (2005) Molecular Biology and Evolution , vol.22 , Issue.4 , pp. 1107-1118
    • Yang, Z.1    Wong, W.S.W.2    Nielsen, R.3
  • 45
    • 27844439855 scopus 로고    scopus 로고
    • Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level
    • DOI 10.1093/molbev/msi237
    • Zhang J, Nielsen R, Yang Z. 2005. Evaluation of an improved branchsite likelihood method for detecting positive selection at the molecular level. Mol Biol Evol. 22:2472-2479. (Pubitemid 41661383)
    • (2005) Molecular Biology and Evolution , vol.22 , Issue.12 , pp. 2472-2479
    • Zhang, J.1    Nielsen, R.2    Yang, Z.3
  • 46
    • 0033769082 scopus 로고    scopus 로고
    • Analysis and origins of the human and mouse RNase L genes: Mediators of interferon action
    • Zhou A, Nie H, Silverman RH. 2000. Analysis and origins of the human and mouse RNase L genes: mediators of interferon action. Mamm Genome. 11:989-992.
    • (2000) Mamm Genome , vol.11 , pp. 989-992
    • Zhou, A.1    Nie, H.2    Silverman, R.H.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.