-
1
-
-
8844227502
-
Population history and natural selection shape patterns of genetic variation in 132 genes
-
Akey, J.M., Eberle, M.A., Rieder, M.J., Carlson, C.S., Shriver, M.D., Nickerson, D.A., and Kruglyak, L. 2004. Population history and natural selection shape patterns of genetic variation in 132 genes. PLoS Biol. 2: e286.
-
(2004)
PLoS Biol.
, vol.2
-
-
Akey, J.M.1
Eberle, M.A.2
Rieder, M.J.3
Carlson, C.S.4
Shriver, M.D.5
Nickerson, D.A.6
Kruglyak, L.7
-
2
-
-
0346373663
-
Population-genetic basis of haplotype blocks in the 5q31 region
-
Anderson, E.C. and Slatkin, M. 2004. Population-genetic basis of haplotype blocks in the 5q31 region. Am. J. Hum. Genet. 74: 40-49.
-
(2004)
Am. J. Hum. Genet.
, vol.74
, pp. 40-49
-
-
Anderson, E.C.1
Slatkin, M.2
-
3
-
-
0036208832
-
Patterns of linkage disequilibrium in the human genome
-
Ardlie, K.G., Kruglyak, L., and Seielstad, M. 2002. Patterns of linkage disequilibrium in the human genome. Nat. Rev. Genet. 3: 299-309.
-
(2002)
Nat. Rev. Genet.
, vol.3
, pp. 299-309
-
-
Ardlie, K.G.1
Kruglyak, L.2
Seielstad, M.3
-
4
-
-
0032429154
-
A DNA polymorphism discovery resource for research on human genetic variation
-
Collins, F.S., Brooks, L.D., and Chakravarti, A. 1998. A DNA polymorphism discovery resource for research on human genetic variation. Genome Res. 8: 1229-1231.
-
(1998)
Genome Res.
, vol.8
, pp. 1229-1231
-
-
Collins, F.S.1
Brooks, L.D.2
Chakravarti, A.3
-
5
-
-
3042700117
-
Evidence for substantial fine-scale variation in recombination rates across the human genome
-
Crawford, D.C., Bhangale, T., Li, N., Hellenthal, G., Rieder, M.J., Nickerson, D.A., and Stephens, M. 2004. Evidence for substantial fine-scale variation in recombination rates across the human genome. Nat. Genet. 36: 700-706.
-
(2004)
Nat. Genet.
, vol.36
, pp. 700-706
-
-
Crawford, D.C.1
Bhangale, T.2
Li, N.3
Hellenthal, G.4
Rieder, M.J.5
Nickerson, D.A.6
Stephens, M.7
-
6
-
-
0036783307
-
High-resolution patterns of meiotic recombination across the human major histocompatibility complex
-
Cullen, M., Perfetto, S.P., Klitz, W., Nelson, G., and Carrington, M. 2002. High-resolution patterns of meiotic recombination across the human major histocompatibility complex. Am. J. Hum. Genet. 71: 759-776.
-
(2002)
Am. J. Hum. Genet.
, vol.71
, pp. 759-776
-
-
Cullen, M.1
Perfetto, S.P.2
Klitz, W.3
Nelson, G.4
Carrington, M.5
-
7
-
-
0034835229
-
Gene conversion and different population histories may explain the contrast between polymorphism and linkage disequilibrium levels
-
Frisse, L., Hudson, R.R., Bartoszewicz, A., Wall, J.D., Donfack, J., and Di Rienzo, A. 2001. Gene conversion and different population histories may explain the contrast between polymorphism and linkage disequilibrium levels. Am. J. Hum. Genet. 69: 831-843.
-
(2001)
Am. J. Hum. Genet.
, vol.69
, pp. 831-843
-
-
Frisse, L.1
Hudson, R.R.2
Bartoszewicz, A.3
Wall, J.D.4
Donfack, J.5
Di Rienzo, A.6
-
8
-
-
18444369013
-
The structure of haplotype blocks in the human genome
-
Gabriel, S.B., Schaffner, S.F., Nguyen, H., Moore, J.M., Roy, J., Blumenstiel, B., Higgins, J., DeFelice, M., Lochner, A., Faggart, M., et al. 2002. The structure of haplotype blocks in the human genome. Science 296: 2225-2229.
-
(2002)
Science
, vol.296
, pp. 2225-2229
-
-
Gabriel, S.B.1
Schaffner, S.F.2
Nguyen, H.3
Moore, J.M.4
Roy, J.5
Blumenstiel, B.6
Higgins, J.7
DeFelice, M.8
Lochner, A.9
Faggart, M.10
-
9
-
-
0001935493
-
Gene genealogies and the coalescent process
-
(eds. D.J. Futuyma and J. Antonovics), Oxford University Press, Oxford, UK
-
Hudson, R.R. 1990. Gene genealogies and the coalescent process. In Oxford surveys in evolutionary biology (eds. D.J. Futuyma and J. Antonovics), pp. 1-44. Oxford University Press, Oxford, UK.
-
(1990)
Oxford Surveys in Evolutionary Biology
, pp. 1-44
-
-
Hudson, R.R.1
-
10
-
-
0036184745
-
Generating samples under a Wright-Fisher neutral model of genetic variation
-
_. 2002. Generating samples under a Wright-Fisher neutral model of genetic variation. Bioinformatics 18: 337-338.
-
(2002)
Bioinformatics
, vol.18
, pp. 337-338
-
-
-
11
-
-
0034795550
-
Intensely punctate meiotic recombination in the class II region of the major histocompatibility complex
-
Jeffreys, A.J., Kauppi, L., and Neumann, R. 2001. Intensely punctate meiotic recombination in the class II region of the major histocompatibility complex. Nat. Genet. 29: 217-222.
-
(2001)
Nat. Genet.
, vol.29
, pp. 217-222
-
-
Jeffreys, A.J.1
Kauppi, L.2
Neumann, R.3
-
12
-
-
12244297072
-
Recombination hotspots rather than population history dominate linkage disequilibrium in the MHC class II region
-
Kauppi, L., Sajantila, A., and Jeffreys, A.J. 2003. Recombination hotspots rather than population history dominate linkage disequilibrium in the MHC class II region. Hum. Mol. Genet. 12: 33-40.
-
(2003)
Hum. Mol. Genet.
, vol.12
, pp. 33-40
-
-
Kauppi, L.1
Sajantila, A.2
Jeffreys, A.J.3
-
13
-
-
18544381909
-
A high-resolution recombination map of the human genome
-
Kong, A., Gudbjartsson, D.F., Sainz, J., Jonsdottir, G.M., Gudjonsson, S.A., Richardsson, B., Sigurdardottir, S., Barnard, J., Hallbeck, B., Masson, G., et al. 2002. A high-resolution recombination map of the human genome. Nat. Genet. 31: 241-247.
-
(2002)
Nat. Genet.
, vol.31
, pp. 241-247
-
-
Kong, A.1
Gudbjartsson, D.F.2
Sainz, J.3
Jonsdottir, G.M.4
Gudjonsson, S.A.5
Richardsson, B.6
Sigurdardottir, S.7
Barnard, J.8
Hallbeck, B.9
Masson, G.10
-
14
-
-
1642282195
-
The allele frequency spectrum in genome-wide human variation data reveals signals of differential demographic history in three large world populations
-
Marth, G.T., Czabarka, E., Murvai, J., and Sherry, S.T. 2004. The allele frequency spectrum in genome-wide human variation data reveals signals of differential demographic history in three large world populations. Genetics 166: 351-372.
-
(2004)
Genetics
, vol.166
, pp. 351-372
-
-
Marth, G.T.1
Czabarka, E.2
Murvai, J.3
Sherry, S.T.4
-
15
-
-
0036648248
-
Crossover clustering and rapid decay of linkage disequilibrium in the Xp/Yp pseudoautosomal gene SHOX
-
May, C.A., Shone, A.C., Kalaydjieva, L., Sajantila, A., and Jeffreys, A.J. 2002. Crossover clustering and rapid decay of linkage disequilibrium in the Xp/Yp pseudoautosomal gene SHOX. Nat. Genet. 31: 272-275.
-
(2002)
Nat. Genet.
, vol.31
, pp. 272-275
-
-
May, C.A.1
Shone, A.C.2
Kalaydjieva, L.3
Sajantila, A.4
Jeffreys, A.J.5
-
16
-
-
2142773942
-
The fine-scale structure of recombination rate variation in the human genome
-
McVean, G.A., Myers, S.R., Hunt, S., Deloukas, P., Bentley, D.R., and Donnelly, P. 2004. The fine-scale structure of recombination rate variation in the human genome. Science 304: 581-584.
-
(2004)
Science
, vol.304
, pp. 581-584
-
-
McVean, G.A.1
Myers, S.R.2
Hunt, S.3
Deloukas, P.4
Bentley, D.R.5
Donnelly, P.6
-
17
-
-
0037370466
-
Chromosome-wide distribution of haplotype blocks and the role of recombination hot spots
-
Phillips, M.S., Lawrence, R., Sachidanandam, R., Morris, A.P., Balding, D.J., Donaldson, M.A., Studebaker, J.F., Ankener, W.M., Alfisi, S.V., Kuo, F.S., et al. 2003. Chromosome-wide distribution of haplotype blocks and the role of recombination hot spots. Nat. Genet. 33: 382-387.
-
(2003)
Nat. Genet.
, vol.33
, pp. 382-387
-
-
Phillips, M.S.1
Lawrence, R.2
Sachidanandam, R.3
Morris, A.P.4
Balding, D.J.5
Donaldson, M.A.6
Studebaker, J.F.7
Ankener, W.M.8
Alfisi, S.V.9
Kuo, F.S.10
-
18
-
-
0034977045
-
Linkage disequilibrium in humans: Models and data
-
Pritchard, J.K. and Przeworski, M. 2001. Linkage disequilibrium in humans: Models and data. Am. J. Hum. Genet. 69: 1-14.
-
(2001)
Am. J. Hum. Genet.
, vol.69
, pp. 1-14
-
-
Pritchard, J.K.1
Przeworski, M.2
-
19
-
-
0035837267
-
Linkage disequilibrium in the human genome
-
Reich, D.E., Cargill, M., Bolk, S., Ireland, J., Sabeti, P.C., Richter, D.J., Lavery, T., Kouyoumjian, R., Farhadian, S.F., Ward, R., et al. 2001. Linkage disequilibrium in the human genome. Nature 411: 199-204.
-
(2001)
Nature
, vol.411
, pp. 199-204
-
-
Reich, D.E.1
Cargill, M.2
Bolk, S.3
Ireland, J.4
Sabeti, P.C.5
Richter, D.J.6
Lavery, T.7
Kouyoumjian, R.8
Farhadian, S.F.9
Ward, R.10
-
20
-
-
0036725017
-
Human genome sequence variation and the influence of gene history, mutation and recombination
-
Reich, D.E., Schaffner, S.F., Daly, M.J., McVean, G., Mullikin, J.C., Higgins, J.M., Richter, D.J., Lander, E.S., and Altshuler, D. 2002. Human genome sequence variation and the influence of gene history, mutation and recombination. Nat. Genet. 32: 135-142.
-
(2002)
Nat. Genet.
, vol.32
, pp. 135-142
-
-
Reich, D.E.1
Schaffner, S.F.2
Daly, M.J.3
McVean, G.4
Mullikin, J.C.5
Higgins, J.M.6
Richter, D.J.7
Lander, E.S.8
Altshuler, D.9
-
21
-
-
0037167852
-
Detecting recent positive selection in the human genome from haplotype structure
-
Sabeti, P.C., Reich, D.E., Higgins, J.M., Levine, H.Z., Richter, D.J., Schaffner, S.F., Gabriel, S.B., Platko, J.V., Patterson, N.J., McDonald, G.J., et al. 2002. Detecting recent positive selection in the human genome from haplotype structure. Nature 419: 832-837.
-
(2002)
Nature
, vol.419
, pp. 832-837
-
-
Sabeti, P.C.1
Reich, D.E.2
Higgins, J.M.3
Levine, H.Z.4
Richter, D.J.5
Schaffner, S.F.6
Gabriel, S.B.7
Platko, J.V.8
Patterson, N.J.9
McDonald, G.J.10
-
22
-
-
0035865322
-
A map of human genome sequence variation containing 1.42 million single nucleotide polymorphisms
-
Sachidanandam, R., Weissman, D., Schmidt, S.C., Kakol, J.M., Stein, L.D., Marth, G., Sherry, S., Mullikin, J.C., Mortimore, B.J., Willey, D.L., et al. 2001. A map of human genome sequence variation containing 1.42 million single nucleotide polymorphisms. Nature 409: 928-933.
-
(2001)
Nature
, vol.409
, pp. 928-933
-
-
Sachidanandam, R.1
Weissman, D.2
Schmidt, S.C.3
Kakol, J.M.4
Stein, L.D.5
Marth, G.6
Sherry, S.7
Mullikin, J.C.8
Mortimore, B.J.9
Willey, D.L.10
-
23
-
-
3042595170
-
Selection versus demography: A multilocus investigation of the domestication process in maize
-
Tenaillon, M.I., U'Ren, J., Tenaillon, O., and Gaut, B.S. 2004. Selection versus demography: A multilocus investigation of the domestication process in maize. Mol. Biol. Evol. 21: 1214-1225.
-
(2004)
Mol. Biol. Evol.
, vol.21
, pp. 1214-1225
-
-
Tenaillon, M.I.1
U'Ren, J.2
Tenaillon, O.3
Gaut, B.S.4
-
24
-
-
0041707987
-
Theory of the effects of population structure and sampling on patterns of linkage disequilibrium applied to genomic data from humans
-
Wakeley, J. and Lessard, S. 2003. Theory of the effects of population structure and sampling on patterns of linkage disequilibrium applied to genomic data from humans. Genetics 164: 1043-1053.
-
(2003)
Genetics
, vol.164
, pp. 1043-1053
-
-
Wakeley, J.1
Lessard, S.2
-
25
-
-
0035205317
-
The discovery of single-nucleotide polymorphisms-and inferences about human demographic history
-
Wakeley, J., Nielsen, R., Liu-Cordero, S.N., and Ardlie, K. 2001. The discovery of single-nucleotide polymorphisms-and inferences about human demographic history. Am. J. Hum. Genet. 69: 1332-1347.
-
(2001)
Am. J. Hum. Genet.
, vol.69
, pp. 1332-1347
-
-
Wakeley, J.1
Nielsen, R.2
Liu-Cordero, S.N.3
Ardlie, K.4
-
26
-
-
0042387813
-
Assessing the performance of the haplotype block model of linkage disequilibrium
-
Wall, J.D. and Pritchard, J.K. 2003a. Assessing the performance of the haplotype block model of linkage disequilibrium. Am. J. Hum. Genet. 73: 502-515.
-
(2003)
Am. J. Hum. Genet.
, vol.73
, pp. 502-515
-
-
Wall, J.D.1
Pritchard, J.K.2
-
27
-
-
0043267974
-
Haplotype blocks and linkage disequilibrium in the human genome
-
_. 2003b. Haplotype blocks and linkage disequilibrium in the human genome. Nat. Rev. Genet. 4: 587-597.
-
(2003)
Nat. Rev. Genet.
, vol.4
, pp. 587-597
-
-
-
28
-
-
0036743513
-
Testing models of selection and demography in Drosophila simulans
-
Wall, J.D., Andolfatto, P., and Przeworski, M. 2002. Testing models of selection and demography in Drosophila simulans. Genetics 162: 203-216.
-
(2002)
Genetics
, vol.162
, pp. 203-216
-
-
Wall, J.D.1
Andolfatto, P.2
Przeworski, M.3
-
29
-
-
27544490830
-
Large-scale survey of variation and signals of selection in 168 immunological genes
-
in press
-
Walsh, E.C., Sabeti, P., Hutcheson, H., Fry, B., Schaffner, S.F., de Bakker, P.I.W., Varilly, P., Roy, J., Cooper, R., Zeng, Y., et al. 2005. Large-scale survey of variation and signals of selection in 168 immunological genes. Human Genetics (in press).
-
(2005)
Human Genetics
-
-
Walsh, E.C.1
Sabeti, P.2
Hutcheson, H.3
Fry, B.4
Schaffner, S.F.5
De Bakker, P.I.W.6
Varilly, P.7
Roy, J.8
Cooper, R.9
Zeng, Y.10
-
30
-
-
0038530758
-
A coalescent model of recombination hotspots
-
Wiuf, C. and Posada, D. 2003. A coalescent model of recombination hotspots. Genetics 164: 407-417.
-
(2003)
Genetics
, vol.164
, pp. 407-417
-
-
Wiuf, C.1
Posada, D.2
-
31
-
-
27544442808
-
-
authors' Web site.
-
http://www.broad.mit.edu/∼sfs/cosi; authors' Web site.
-
-
-
|