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Volumn 109, Issue 39, 2012, Pages 15793-15798

Dinoflagellate tandem array gene transcripts are highly conserved and not polycistronic

Author keywords

[No Author keywords available]

Indexed keywords

DNA BINDING PROTEIN; ENZYME; RNA; SPACER DNA; TRANSCRIPTOME;

EID: 84866848192     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1206683109     Document Type: Article
Times cited : (72)

References (53)
  • 1
    • 0032503986 scopus 로고    scopus 로고
    • Primary production of the biosphere: Integrating terrestrial and oceanic components
    • DOI 10.1126/science.281.5374.237
    • Field CB, Behrenfeld MJ, Randerson JT, Falkowski P (1998) Primary production of the biosphere: Integrating terrestrial and oceanic components. Science 281:237-240. (Pubitemid 28334501)
    • (1998) Science , vol.281 , Issue.5374 , pp. 237-240
    • Field, C.B.1    Behrenfeld, M.J.2    Randerson, J.T.3    Falkowski, P.4
  • 2
    • 78049451630 scopus 로고    scopus 로고
    • Symbiodinium-invertebrate symbioses and the role of metabolomics
    • Gordon BR, Leggat W (2010) Symbiodinium-invertebrate symbioses and the role of metabolomics. Mar Drugs 8:2546-2568.
    • (2010) Mar Drugs , vol.8 , pp. 2546-2568
    • Gordon, B.R.1    Leggat, W.2
  • 5
    • 14844352026 scopus 로고    scopus 로고
    • Architecture and evolution of dinoflagellate chromosomes: An enigmatic origin
    • DOI 10.1159/000082409
    • Costas E, Goyanes V (2005) Architecture and evolution of dinoflagellate chromosomes: An enigmatic origin. Cytogenet Genome Res 109:268-275. (Pubitemid 40470332)
    • (2005) Cytogenetic and Genome Research , vol.109 , Issue.1-3 , pp. 268-275
    • Costas, E.1    Goyanes, V.2
  • 6
    • 77957778183 scopus 로고    scopus 로고
    • Birefringence and DNA condensation of liquid crystalline chromosomes
    • Chow MH, Yan KT, Bennett MJ, Wong JT (2010) Birefringence and DNA condensation of liquid crystalline chromosomes. Eukaryot Cell 9:1577-1587.
    • (2010) Eukaryot Cell , vol.9 , pp. 1577-1587
    • Chow, M.H.1    Yan, K.T.2    Bennett, M.J.3    Wong, J.T.4
  • 7
    • 79959953825 scopus 로고    scopus 로고
    • Genomic understanding of dinoflagellates
    • Lin S (2011) Genomic understanding of dinoflagellates. Res Microbiol 162:551-569.
    • (2011) Res Microbiol , vol.162 , pp. 551-569
    • Lin, S.1
  • 8
    • 0001791944 scopus 로고
    • Academic, New York
    • Spector D, ed (1984) Dinofl agellates (Academic, New York), p 545.
    • (1984) Dinofl Agellates , pp. 545
    • Spector, D.1
  • 9
    • 0030832064 scopus 로고    scopus 로고
    • Structure and organization of the peridinin-chlorophyll a-binding protein gene in Gonyaulax polyedra
    • Le QH, Markovic P, Hastings JW, Jovine RV, Morse D (1997) Structure and organization of the peridinin-chlorophyll a-binding protein gene in Gonyaulax polyedra. Mol Gen Genet 255:595-604.
    • (1997) Mol Gen Genet , vol.255 , pp. 595-604
    • Le, Q.H.1    Markovic, P.2    Hastings, J.W.3    Jovine, R.V.4    Morse, D.5
  • 10
    • 0031907265 scopus 로고    scopus 로고
    • The structure and organization of the luciferase gene in the photosynthetic dinoflagellate Gonyaulax polyedra
    • DOI 10.1023/A:1005941421474
    • Li L, Hastings JW (1998) The structure and organization of the luciferase gene in the photosynthetic dinoflagellate Gonyaulax polyedra. Plant Mol Biol 36:275-284. (Pubitemid 28118091)
    • (1998) Plant Molecular Biology , vol.36 , Issue.2 , pp. 275-284
    • Li, L.1    Hastings, J.W.2
  • 12
    • 0023665133 scopus 로고
    • Transcription of the intergenic regions of the tubulin gene cluster of Trypanosoma brucei: Evidence for a polycistronic transcription unit in a eukaryote
    • Imboden MA, Laird PW, Affolter M, Seebeck T (1987) Transcription of the intergenic regions of the tubulin gene cluster of Trypanosoma brucei: Evidence for a polycistronic transcription unit in a eukaryote. Nucleic Acids Res 15:7357-7368.
    • (1987) Nucleic Acids Res , vol.15 , pp. 7357-7368
    • Imboden, M.A.1    Laird, P.W.2    Affolter, M.3    Seebeck, T.4
  • 13
    • 57749195712 scopus 로고    scopus 로고
    • RNA-Seq: A revolutionary tool for transcriptomics
    • Wang Z, Gerstein M, Snyder M (2009) RNA-Seq: A revolutionary tool for transcriptomics. Nat Rev Genet 10:57-63.
    • (2009) Nat Rev Genet , vol.10 , pp. 57-63
    • Wang, Z.1    Gerstein, M.2    Snyder, M.3
  • 14
    • 79959249140 scopus 로고    scopus 로고
    • Short read Illumina data for the de novo assembly of a non-model snail species transcriptome (Radix balthica, Basommatophora, Pulmonata), and a comparison of assembler performance
    • Feldmeyer B, Wheat CW, Krezdorn N, Rotter B, Pfenninger M (2011) Short read Illumina data for the de novo assembly of a non-model snail species transcriptome (Radix balthica, Basommatophora, Pulmonata), and a comparison of assembler performance. BMC Genomics 12:317.
    • (2011) BMC Genomics , vol.12 , pp. 317
    • Feldmeyer, B.1    Wheat, C.W.2    Krezdorn, N.3    Rotter, B.4    Pfenninger, M.5
  • 15
    • 0037174868 scopus 로고    scopus 로고
    • A new class of transcription initiation factors, intermediate between TATA box-binding proteins (TBPs) and TBP-like factors (TLFs), is present in the marine unicellular organism, the dinoflagellate Crypthecodinium cohnii
    • DOI 10.1074/jbc.M205624200
    • Guillebault D, et al. (2002) A new class of transcription initiation factor, intermediate between TBPs and TLFs is present in the marine unicellular organism: The dinoflagellate Crypthecodinium cohnii. J Biol Chem 277:40881-40886. (Pubitemid 35215674)
    • (2002) Journal of Biological Chemistry , vol.277 , Issue.43 , pp. 40881-40886
    • Guillebault, D.1    Sasorith, S.2    Derelle, E.3    Wurtz, J.-M.4    Lozano, J.-C.5    Bingham, S.6    Tora, L.7    Moreau, H.8
  • 16
    • 84859357011 scopus 로고    scopus 로고
    • A full suite of histone and histone modifying genes are transcribed in the dinoflagellate Lingulodinium
    • Roy S, Morse D (2012) A full suite of histone and histone modifying genes are transcribed in the dinoflagellate Lingulodinium. PLoS ONE 7:e34340.
    • (2012) PLoS ONE , vol.7
    • Roy, S.1    Morse, D.2
  • 17
    • 76549101962 scopus 로고    scopus 로고
    • Eukaryotic cold shock domain proteins: Highly versatile regulators of gene expression
    • Mihailovich M, Militti C, Gabaldón T, Gebauer F (2010) Eukaryotic cold shock domain proteins: Highly versatile regulators of gene expression. Bioessays 32:109-118.
    • (2010) Bioessays , vol.32 , pp. 109-118
    • Mihailovich, M.1    Militti, C.2    Gabaldón, T.3    Gebauer, F.4
  • 18
    • 0028977898 scopus 로고
    • A nuclear-encoded form II RuBisCO in dinoflagellates
    • Morse D, Salois P, Markovic P, Hastings JW (1995) A nuclear-encoded form II RuBisCO in dinoflagellates. Science 268:1622-1624.
    • (1995) Science , vol.268 , pp. 1622-1624
    • Morse, D.1    Salois, P.2    Markovic, P.3    Hastings, J.W.4
  • 19
    • 0032434097 scopus 로고    scopus 로고
    • The phylogeny of glyceraldehyde-3-phosphate dehydrogenase indicates lateral gene transfer from cryptomonads to dinoflagellates
    • DOI 10.1007/PL00006420
    • Fagan T, Woodland Hastings J, Morse D (1998) The phylogeny of glyceraldehyde-3-phosphate dehydrogenase indicates lateral gene transfer from cryptomonads to dinoflagellates. J Mol Evol 47:633-639. (Pubitemid 29008764)
    • (1998) Journal of Molecular Evolution , vol.47 , Issue.6 , pp. 633-639
    • Fagan, T.1    Hastings, J.W.2    Morse, D.3
  • 20
    • 35948973954 scopus 로고    scopus 로고
    • Horizontal gene transfer in chromalveolates
    • Nosenko T, Bhattacharya D (2007) Horizontal gene transfer in chromalveolates. BMC Evol Biol 7:173.
    • (2007) BMC Evol Biol , vol.7 , pp. 173
    • Nosenko, T.1    Bhattacharya, D.2
  • 22
    • 67650297002 scopus 로고    scopus 로고
    • Cascades of convergent evolution: The corresponding evolutionary histories of euglenozoans and dinoflagellates
    • Lukes J, Leander BS, Keeling PJ (2009) Cascades of convergent evolution: the corresponding evolutionary histories of euglenozoans and dinoflagellates. Proc Natl Acad Sci USA 106(Suppl 1):9963-9970.
    • (2009) Proc Natl Acad Sci USA , vol.106 , Issue.SUPPL. 1 , pp. 9963-9970
    • Lukes, J.1    Leander, B.S.2    Keeling, P.J.3
  • 23
    • 46249106990 scopus 로고    scopus 로고
    • Mapping and quantifying mammalian transcriptomes by RNA-Seq
    • DOI 10.1038/nmeth.1226, PII NMETH.1226
    • Mortazavi A, Williams BA, McCue K, Schaeffer L, Wold B (2008) Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nat Methods 5:621-628. (Pubitemid 351911867)
    • (2008) Nature Methods , vol.5 , Issue.7 , pp. 621-628
    • Mortazavi, A.1    Williams, B.A.2    McCue, K.3    Schaeffer, L.4    Wold, B.5
  • 24
    • 0024486256 scopus 로고
    • Circadian regulation of bioluminescence in Gonyaulax involves translational control
    • Morse D, Milos PM, Roux E, Hastings JW (1989) Circadian regulation of bioluminescence in Gonyaulax involves translational control. Proc Natl Acad Sci USA 86: 172-176.
    • (1989) Proc Natl Acad Sci USA , vol.86 , pp. 172-176
    • Morse, D.1    Milos, P.M.2    Roux, E.3    Hastings, J.W.4
  • 25
    • 0033564237 scopus 로고    scopus 로고
    • Circadian synthesis of a nuclear-encoded chloroplast glyceraldehyde-3- phosphate dehydrogenase in the dinoflagellate Gonyaulax polyedra is translationally controlled
    • Fagan T, Morse D, Hastings JW (1999) Circadian synthesis of a nuclear-encoded chloroplast glyceraldehyde-3-phosphate dehydrogenase in the dinoflagellate Gonyaulax polyedra is translationally controlled. Biochemistry 38:7689-7695.
    • (1999) Biochemistry , vol.38 , pp. 7689-7695
    • Fagan, T.1    Morse, D.2    Hastings, J.W.3
  • 26
    • 65549134570 scopus 로고    scopus 로고
    • Histone acetylations mark origins of polycistronic transcription in Leishmania major
    • Thomas S, Green A, Sturm NR, Campbell DA, Myler PJ (2009) Histone acetylations mark origins of polycistronic transcription in Leishmania major. BMC Genomics 10: 152.
    • (2009) BMC Genomics , vol.10 , pp. 152
    • Thomas, S.1    Green, A.2    Sturm, N.R.3    Campbell, D.A.4    Myler, P.J.5
  • 27
    • 0021722311 scopus 로고
    • Trypanosome mRNAs share a common 5' spliced leader sequence
    • Parsons M, Nelson RG, Watkins KP, Agabian N (1984) Trypanosome mRNAs share a common 5? spliced leader sequence. Cell 38:309-316. (Pubitemid 15216558)
    • (1984) Cell , vol.38 , Issue.1 , pp. 309-316
    • Parsons, M.1    Nelson, R.G.2    Watkins, K.P.3    Agabian, N.4
  • 29
    • 82955232386 scopus 로고    scopus 로고
    • Total RNA sequencing reveals nascent transcription and widespread co-transcriptional splicing in the human brain
    • Ameur A, et al. (2011) Total RNA sequencing reveals nascent transcription and widespread co-transcriptional splicing in the human brain. Nat Struct Mol Biol 18: 1435-1440.
    • (2011) Nat Struct Mol Biol , vol.18 , pp. 1435-1440
    • Ameur, A.1
  • 30
    • 0347356451 scopus 로고    scopus 로고
    • PCP Gene Family in Symbiodinium from Hippopus hippopus: Low Levels of Concerted Evolution, Isoform Diversity, and Spectral Tuning of Chromophores
    • DOI 10.1093/molbev/msg233
    • Reichman JR, Wilcox TP, Vize PD (2003) PCP gene family in Symbiodinium from Hippopus hippopus: low levels of concerted evolution, isoform diversity, and spectral tuning of chromophores. Mol Biol Evol 20:2143-2154. (Pubitemid 38057778)
    • (2003) Molecular Biology and Evolution , vol.20 , Issue.12 , pp. 2143-2154
    • Reichman, J.R.1    Wilcox, T.P.2    Vize, P.D.3
  • 31
    • 33644822102 scopus 로고    scopus 로고
    • Isolation and characterization of proliferating cell nuclear antigen from the dinoflagellate Pfiesteria piscicida
    • Zhang H, Hou Y, Lin S (2006) Isolation and characterization of proliferating cell nuclear antigen from the dinoflagellate Pfiesteria piscicida. J Eukaryot Microbiol 53: 142-150.
    • (2006) J Eukaryot Microbiol , vol.53 , pp. 142-150
    • Zhang, H.1    Hou, Y.2    Lin, S.3
  • 32
    • 51449120033 scopus 로고    scopus 로고
    • From stop to start: Tandem gene arrangement, copy number and trans-splicing sites in the dinoflagellate Amphidinium carterae
    • Bachvaroff TR, Place AR (2008) From stop to start: Tandem gene arrangement, copy number and trans-splicing sites in the dinoflagellate Amphidinium carterae. PLoS ONE 3:e2929.
    • (2008) PLoS ONE , vol.3
    • Bachvaroff, T.R.1    Place, A.R.2
  • 33
    • 80054694785 scopus 로고    scopus 로고
    • The transcriptome of the novel dinoflagellate Oxyrrhis marina (Alveolata: Dinophyceae): Response to salinity examined by 454 sequencing
    • Lowe CD, et al. (2011) The transcriptome of the novel dinoflagellate Oxyrrhis marina (Alveolata: Dinophyceae): Response to salinity examined by 454 sequencing. BMC Genomics 12:519.
    • (2011) BMC Genomics , vol.12 , pp. 519
    • Lowe, C.D.1
  • 34
    • 1942444640 scopus 로고    scopus 로고
    • Dinoflagellate expressed sequence tag data indicate massive transfer of chloroplast genes to the nuclear genome
    • DOI 10.1078/1434461000165
    • Bachvaroff TR, Concepcion GT, Rogers CR, Herman EM, Delwiche CF (2004) Dinoflagellate expressed sequence tag data indicate massive transfer of chloroplast genes to the nuclear genome. Protist 155:65-78. (Pubitemid 38503626)
    • (2004) Protist , vol.155 , Issue.1 , pp. 65-78
    • Bachvaroff, T.R.1    Concepcion, G.T.2    Rogers, C.R.3    Herman, E.M.4    Delwiche, C.F.5
  • 35
    • 78650417363 scopus 로고    scopus 로고
    • Introns, alternative splicing, spliced leader transsplicing and differential expression of pcna and cyclin in Perkinsus marinus
    • Zhang H, Dungan CF, Lin S (2011) Introns, alternative splicing, spliced leader transsplicing and differential expression of pcna and cyclin in Perkinsus marinus. Protist 162:154-167.
    • (2011) Protist , vol.162 , pp. 154-167
    • Zhang, H.1    Dungan, C.F.2    Lin, S.3
  • 36
    • 56249098614 scopus 로고    scopus 로고
    • The Phaeodactylum genome reveals the evolutionary history of diatom genomes
    • Bowler C, et al. (2008) The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Nature 456:239-244.
    • (2008) Nature , vol.456 , pp. 239-244
    • Bowler, C.1
  • 37
    • 70349202709 scopus 로고    scopus 로고
    • Distinct gene number-genome size relationships for eukaryotes and non-eukaryotes: Gene content estimation for dinoflagellate genomes
    • Hou Y, Lin S (2009) Distinct gene number-genome size relationships for eukaryotes and non-eukaryotes: Gene content estimation for dinoflagellate genomes. PLoS ONE 4:e6978.
    • (2009) PLoS ONE , vol.4
    • Hou, Y.1    Lin, S.2
  • 38
    • 0031404739 scopus 로고    scopus 로고
    • Characterization and molecular phylogeny of a protein kinase cDNA from the dinoflagellate Gonyaulax (Dinophyceae)
    • Salois P, Morse D (1997) Characterization and molecular phylogeny of a protein kinase cDNA from the dinoflagellate Gonyaulax. J Phycol 33:1063-1072. (Pubitemid 28084354)
    • (1997) Journal of Phycology , vol.33 , Issue.6 , pp. 1063-1072
    • Salois, P.1    Morse, D.2
  • 39
    • 57749203132 scopus 로고    scopus 로고
    • Nuclear genome sequence survey of the Dinoflagellate Heterocapsa triquetra
    • McEwan M, Humayun R, Slamovits CH, Keeling PJ (2008) Nuclear genome sequence survey of the Dinoflagellate Heterocapsa triquetra. J Eukaryot Microbiol 55:530-535.
    • (2008) J Eukaryot Microbiol , vol.55 , pp. 530-535
    • McEwan, M.1    Humayun, R.2    Slamovits, C.H.3    Keeling, P.J.4
  • 41
    • 45849153886 scopus 로고    scopus 로고
    • Widespread recycling of processed cDNAs in dinoflagellates
    • DOI 10.1016/j.cub.2008.04.054, PII S0960982208005769
    • Slamovits CH, Keeling PJ (2008) Widespread recycling of processed cDNAs in dinoflagellates. Curr Biol 18:R550-R552. (Pubitemid 351888925)
    • (2008) Current Biology , vol.18 , Issue.13
    • Slamovits, C.H.1    Keeling, P.J.2
  • 42
    • 79951663055 scopus 로고    scopus 로고
    • Version 5.4. Available at
    • Drummond A, et al. (2011) Geneious, Version 5.4. Available at http://www.geneious.com.
    • (2011) Geneious
    • Drummond, A.1
  • 43
    • 4644285876 scopus 로고    scopus 로고
    • Expressed sequence tag analysis of the dinoflagellate Lingulodinium polyedrum during dark phase
    • Tanikawa N, Akimoto H, Ogoh K, Chun W, Ohmiya Y (2004) Expressed sequence tag analysis of the dinoflagellate Lingulodinium polyedrum during dark phase. Photochem Photobiol 80:31-35.
    • (2004) Photochem Photobiol , vol.80 , pp. 31-35
    • Tanikawa, N.1    Akimoto, H.2    Ogoh, K.3    Chun, W.4    Ohmiya, Y.5
  • 45
    • 48449090785 scopus 로고    scopus 로고
    • KEGG Atlas mapping for global analysis of metabolic pathways
    • Okuda S, et al. (2008) KEGG Atlas mapping for global analysis of metabolic pathways. Nucleic Acids Res 36(Web Server issue):W423-W426.
    • (2008) Nucleic Acids Res , vol.36 , Issue.WEB SERVER ISSUE
    • Okuda, S.1
  • 46
    • 24644503098 scopus 로고    scopus 로고
    • Blast2GO: A universal tool for annotation, visualization and analysis in functional genomics research
    • DOI 10.1093/bioinformatics/bti610
    • Conesa A, et al. (2005) Blast2GO: A universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics 21:3674-3676. (Pubitemid 41264107)
    • (2005) Bioinformatics , vol.21 , Issue.18 , pp. 3674-3676
    • Conesa, A.1    Gotz, S.2    Garcia-Gomez, J.M.3    Terol, J.4    Talon, M.5    Robles, M.6
  • 47
    • 75549090603 scopus 로고    scopus 로고
    • The Pfam protein families database
    • Finn RD, et al. (2010) The Pfam protein families database. Nucleic Acids Res 38(Database issue):D211-D222.
    • (2010) Nucleic Acids Res , vol.38 , Issue.DATABASE ISSUE
    • Finn, R.D.1
  • 48
    • 33750858684 scopus 로고    scopus 로고
    • Global trends of whole-genome duplications revealed by the ciliate Paramecium tetraurelia
    • Aury JM, et al. (2006) Global trends of whole-genome duplications revealed by the ciliate Paramecium tetraurelia. Nature 444:171-178.
    • (2006) Nature , vol.444 , pp. 171-178
    • Aury, J.M.1
  • 50
    • 35348896591 scopus 로고    scopus 로고
    • The Chlamydomonas genome reveals the evolution of key animal and plant functions
    • Merchant SS, et al. (2007) The Chlamydomonas genome reveals the evolution of key animal and plant functions. Science 318:245-250.
    • (2007) Science , vol.318 , pp. 245-250
    • Merchant, S.S.1
  • 52
    • 48249102000 scopus 로고    scopus 로고
    • Phylogeny.fr: Robust phylogenetic analysis for the non-specialist
    • Dereeper A, et al. (2008) Phylogeny.fr: Robust phylogenetic analysis for the non-specialist. Nucleic Acids Res 36(Web Server issue):W465- W469.
    • (2008) Nucleic Acids Res , vol.36 , Issue.WEB SERVER ISSUE
    • Dereeper, A.1
  • 53
    • 0022507362 scopus 로고
    • Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions
    • Nei M, Gojobori T (1986) Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. Mol Biol Evol 3:418-426. (Pubitemid 16010523)
    • (1986) Molecular Biology and Evolution , vol.3 , Issue.5 , pp. 418-426
    • Nei, M.1    Gojobori, T.2


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