메뉴 건너뛰기




Volumn 155, Issue 1, 2004, Pages 65-78

Dinoflagellate expressed sequence tag data indicate massive transfer of chloroplast genes to the nuclear genome

Author keywords

[No Author keywords available]

Indexed keywords

ALGAE; ALVEOLATA; AMPHIDINIUM; AMPHIDINIUM CARTERAE; DINOPHYCEAE; LINGULODINIUM; LINGULODINIUM POLYEDRUM; PORPHYRA; PROTOZOA; RHODOPHYTA;

EID: 1942444640     PISSN: 14344610     EISSN: None     Source Type: Journal    
DOI: 10.1078/1434461000165     Document Type: Article
Times cited : (137)

References (52)
  • 3
    • 0002035138 scopus 로고    scopus 로고
    • CCMP - Provasoli-Guillard National Center for Culture of Marine Phytoplankton
    • Andersen RA, Morton SL, Sexton JP (1997) CCMP - Provasoli-Guillard National Center for Culture of Marine Phytoplankton. J Phycol 33: Supplement
    • (1997) J Phycol , vol.33 , Issue.SUPPL.
    • Andersen, R.A.1    Morton, S.L.2    Sexton, J.P.3
  • 4
    • 0034649566 scopus 로고    scopus 로고
    • Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
    • Arabidopsis Genome Initiative (2000) Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 393: 796-815
    • (2000) Nature , vol.393 , pp. 796-815
  • 5
    • 0033834347 scopus 로고    scopus 로고
    • Minicircular plastid DNA in the dinoflagellate Amphidinium operculatum
    • Barbrook AC, Howe CJ (2000) Minicircular plastid DNA in the dinoflagellate Amphidinium operculatum. Mol Gen Genet 263: 152-158
    • (2000) Mol Gen Genet , vol.263 , pp. 152-158
    • Barbrook, A.C.1    Howe, C.J.2
  • 7
    • 0027145102 scopus 로고
    • Kingdom Protozoa and its 18 Phyla
    • Cavalier-Smith T (1993) Kingdom Protozoa and its 18 Phyla. Microbiol Rev 57: 953-994
    • (1993) Microbiol Rev , vol.57 , pp. 953-994
    • Cavalier-Smith, T.1
  • 8
    • 0035998869 scopus 로고    scopus 로고
    • Polyadenylated transcripts containing random gene fragments are expressed in dinoflagellate mitochondria
    • Chaput H, Wang Y, Morse D (2002) Polyadenylated transcripts containing random gene fragments are expressed in dinoflagellate mitochondria. Protist 153: 111-122
    • (2002) Protist , vol.153 , pp. 111-122
    • Chaput, H.1    Wang, Y.2    Morse, D.3
  • 9
    • 0023277545 scopus 로고
    • Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction
    • Chomczynski P, Sacchi N (1987) Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction. Anal Biochem 162: 156-159
    • (1987) Anal Biochem , vol.162 , pp. 156-159
    • Chomczynski, P.1    Sacchi, N.2
  • 10
    • 0032727696 scopus 로고    scopus 로고
    • Tracing the thread of plastid diversity through the tapestry of life
    • Delwiche CF (1999) Tracing the thread of plastid diversity through the tapestry of life. Am Nat 154: S164-S177
    • (1999) Am Nat , vol.154
    • Delwiche, C.F.1
  • 11
    • 0029897169 scopus 로고    scopus 로고
    • Rampant horizontal transfer and duplication of rubisco genes in eubacteria and plastids
    • Delwiche CF, Palmer JD (1996) Rampant horizontal transfer and duplication of rubisco genes in eubacteria and plastids. Mol Biol Evol 13: 873-882
    • (1996) Mol Biol Evol , vol.13 , pp. 873-882
    • Delwiche, C.F.1    Palmer, J.D.2
  • 12
    • 0002983882 scopus 로고
    • Dinoflagellate Ultrastructure and Complex Organelles
    • Taylor FJR (ed) Blackwell Scientific Publications, Oxford
    • Dodge JD, Greuet C (1987) Dinoflagellate Ultrastructure and Complex Organelles. In Taylor FJR (ed) The Biology of Dinoflagellates. Blackwell Scientific Publications, Oxford, pp 92-142
    • (1987) The Biology of Dinoflagellates , pp. 92-142
    • Dodge, J.D.1    Greuet, C.2
  • 14
    • 0032900424 scopus 로고    scopus 로고
    • The plastid genome of the cryptophyte alga, Guillardia theta: Complete sequence and conserved synteny groups confirm its common ancestry with red algae
    • Douglas SE, Penny SL (1999) The plastid genome of the cryptophyte alga, Guillardia theta: complete sequence and conserved synteny groups confirm its common ancestry with red algae. J Mol Evol 48: 236-244
    • (1999) J Mol Evol , vol.48 , pp. 236-244
    • Douglas, S.E.1    Penny, S.L.2
  • 15
    • 0032951790 scopus 로고    scopus 로고
    • A phylogenetic assessment of the eukaryotic light-harvesting antenna proteins, with implications for plastid evolution
    • Durnford DG, Deane JA, Tan S, McFadden GI, Gantt E, Green BR (1999) A phylogenetic assessment of the eukaryotic light-harvesting antenna proteins, with implications for plastid evolution. J Mol Evol 48: 59-68
    • (1999) J Mol Evol , vol.48 , pp. 59-68
    • Durnford, D.G.1    Deane, J.A.2    Tan, S.3    McFadden, G.I.4    Gantt, E.5    Green, B.R.6
  • 16
    • 0032935861 scopus 로고    scopus 로고
    • ChloroP, a neural network-based method for predicting chloroplast transit peptides and their cleavage sites
    • Emanuelsson O, Nielsen H, von Heijne G (1999) ChloroP, a neural network-based method for predicting chloroplast transit peptides and their cleavage sites. Protein Sci 8: 978-984
    • (1999) Protein Sci , vol.8 , pp. 978-984
    • Emanuelsson, O.1    Nielsen, H.2    Von Heijne, G.3
  • 17
    • 0031955518 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using phred. I. Accuracy assessment
    • Ewing B, Hillier L, Wendl MC, Green P (1998) Base-calling of automated sequencer traces using phred. I. Accuracy assessment. Genome Res 8: 175-185
    • (1998) Genome Res , vol.8 , pp. 175-185
    • Ewing, B.1    Hillier, L.2    Wendl, M.C.3    Green, P.4
  • 18
    • 0032434097 scopus 로고    scopus 로고
    • The phylogeny of glyceraldehyde-3-phosphate dehydrogenase indicates lateral gene transfer from cryptomonads to dinoflagellates
    • Fagan T, Hastings JW, Morse D (1998) The phylogeny of glyceraldehyde-3-phosphate dehydrogenase indicates lateral gene transfer from cryptomonads to dinoflagellates. J Mol Evol 47: 633-639
    • (1998) J Mol Evol , vol.47 , pp. 633-639
    • Fagan, T.1    Hastings, J.W.2    Morse, D.3
  • 19
    • 0035103466 scopus 로고    scopus 로고
    • Nuclear-encoded, plastid targeted genes suggest a single common origin for apicomplexan and dinoflagellate plastids
    • Fast NM, Kissinger JC, Roos DS, Keeling PJ (2001) Nuclear-encoded, plastid targeted genes suggest a single common origin for apicomplexan and dinoflagellate plastids. Mol Biol Evol 18: 418-426
    • (2001) Mol Biol Evol , vol.18 , pp. 418-426
    • Fast, N.M.1    Kissinger, J.C.2    Roos, D.S.3    Keeling, P.J.4
  • 20
    • 0026017244 scopus 로고
    • Ribosomal RNA sequences of Sarcocystis muris, Theileria annulate and Crypthecodinium cohnii reveal evolutionary relationships among apicomplexans, dinoflagellates, and ciliates
    • Gajadhar AA, Marquardt WC, Hall R, Gunderson J, Ariztia-Carmona EV, Sogin ML (1991) Ribosomal RNA sequences of Sarcocystis muris, Theileria annulate and Crypthecodinium cohnii reveal evolutionary relationships among apicomplexans, dinoflagellates, and ciliates. Mol Biochem Parasitol 45: 147-154
    • (1991) Mol Biochem Parasitol , vol.45 , pp. 147-154
    • Gajadhar, A.A.1    Marquardt, W.C.2    Hall, R.3    Gunderson, J.4    Ariztia-Carmona, E.V.5    Sogin, M.L.6
  • 23
    • 0035956896 scopus 로고    scopus 로고
    • Chlorophyll and carotenoid binding in a simple red algal light-harvesting complex crosses phylogenetic lines
    • Grabowski B, Cunningham FX, Gantt E (2001) Chlorophyll and carotenoid binding in a simple red algal light-harvesting complex crosses phylogenetic lines. Proc Natl Acad Sci USA 98: 2911-2916
    • (2001) Proc Natl Acad Sci USA , vol.98 , pp. 2911-2916
    • Grabowski, B.1    Cunningham, F.X.2    Gantt, E.3
  • 24
    • 0004162569 scopus 로고    scopus 로고
    • Prentice-Hall, Upper Saddle River, NJ
    • Graham LE, Wilcox LW (2000) Algae. Prentice-Hall, Upper Saddle River, NJ
    • (2000) Algae
    • Graham, L.E.1    Wilcox, L.W.2
  • 25
    • 0037388327 scopus 로고    scopus 로고
    • The mesozoic radiation of eukaryotic algae: The portable plastid hypothesis
    • Grzebyk D, Schofield O, Vetriani C, Falkowski PG (2003) The mesozoic radiation of eukaryotic algae: the portable plastid hypothesis. J Phycol 39: 259-267
    • (2003) J Phycol , vol.39 , pp. 259-267
    • Grzebyk, D.1    Schofield, O.2    Vetriani, C.3    Falkowski, P.G.4
  • 27
    • 0035929245 scopus 로고    scopus 로고
    • 'Empty' minicircles and petB/atpA and psbD/psbE (cytb559a) genes in tandem in Amphidinium carterae plastid DNA
    • Hiller RG (2001) 'Empty' minicircles and petB/atpA and psbD/psbE (cytb559a) genes in tandem in Amphidinium carterae plastid DNA. FEBS Lett 505: 449-452
    • (2001) FEBS Lett , vol.505 , pp. 449-452
    • Hiller, R.G.1
  • 28
    • 0028920225 scopus 로고
    • The light harvesting chlorophyll a-c-binding protein of dinoflagellates: A putative polyprotein
    • Hiller RG, Wrench PM, Sharples FP (1995) The light harvesting chlorophyll a-c-binding protein of dinoflagellates: a putative polyprotein. FEBS Lett 363: 175-178
    • (1995) FEBS Lett , vol.363 , pp. 175-178
    • Hiller, R.G.1    Wrench, P.M.2    Sharples, F.P.3
  • 29
    • 0037047078 scopus 로고    scopus 로고
    • Second- and third-hand chloroplasts in dinoflagellates: Phylogeny of oxygen-evolving enhancer 1 (PsbO) protein reveals replacement of a nuclear-encoded plastid gene by that of a haptophyte tertiary endosymbiont
    • Ishida K, Green BR (2002) Second- and third-hand chloroplasts in dinoflagellates: phylogeny of oxygen-evolving enhancer 1 (PsbO) protein reveals replacement of a nuclear-encoded plastid gene by that of a haptophyte tertiary endosymbiont. Proc Natl Acad Sci USA 99: 9294-9299
    • (2002) Proc Natl Acad Sci USA , vol.99 , pp. 9294-9299
    • Ishida, K.1    Green, B.R.2
  • 30
    • 0034490505 scopus 로고    scopus 로고
    • Endomembrane structure and the chloroplast protein targeting pathway in Heterosigma akashiwo (Raphidophyceae, Chromista)
    • Ishida K, Cavalier-Smith T, Green BR (2000) Endomembrane structure and the chloroplast protein targeting pathway in Heterosigma akashiwo (Raphidophyceae, Chromista). J Phycol 36: 1135-1144
    • (2000) J Phycol , vol.36 , pp. 1135-1144
    • Ishida, K.1    Cavalier-Smith, T.2    Green, B.R.3
  • 34
    • 0037126071 scopus 로고    scopus 로고
    • Evolutionary analysis of Arabidopsis, cyanobacterial, and chloroplast genomes reveals plastid phylogeny and thousands of cyanobacterial genes in the nucleus
    • Martin W, Rujan T, Richly E, Hansen A, Cornelsen S, Lins T, Leister D, Stoebe B, Hasegawa M, Penny D (2002) Evolutionary analysis of Arabidopsis, cyanobacterial, and chloroplast genomes reveals plastid phylogeny and thousands of cyanobacterial genes in the nucleus. Proc Natl Acad Sci USA 99: 12246-12251
    • (2002) Proc Natl Acad Sci USA , vol.99 , pp. 12246-12251
    • Martin, W.1    Rujan, T.2    Richly, E.3    Hansen, A.4    Cornelsen, S.5    Lins, T.6    Leister, D.7    Stoebe, B.8    Hasegawa, M.9    Penny, D.10
  • 35
    • 0028977898 scopus 로고
    • A nuclear-encoded form II rubisco in dinoflagellates
    • Morse D, Salois P, Markovic P, Hastings JW (1995) A nuclear-encoded form II rubisco in dinoflagellates. Science 268: 1622-1624
    • (1995) Science , vol.268 , pp. 1622-1624
    • Morse, D.1    Salois, P.2    Markovic, P.3    Hastings, J.W.4
  • 36
    • 0041669431 scopus 로고    scopus 로고
    • Plastid ultrastructure defines the protein import pathway in dinoflagellates
    • Nassoury N, Cappadocia M, Morse D (2003) Plastid ultrastructure defines the protein import pathway in dinoflagellates. J Cell Sci 116: 2867-2874
    • (2003) J Cell Sci , vol.116 , pp. 2867-2874
    • Nassoury, N.1    Cappadocia, M.2    Morse, D.3
  • 37
    • 0030614959 scopus 로고    scopus 로고
    • Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites
    • Nielsen H, Engelbrecht J, Brunak S (1997) Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites. Protein Engineering 10: 1-6
    • (1997) Protein Engineering , vol.10 , pp. 1-6
    • Nielsen, H.1    Engelbrecht, J.2    Brunak, S.3
  • 38
    • 0034733187 scopus 로고    scopus 로고
    • Generation of 10,154 expressed sequence tags from a leafy gametophyte of a marine red alga, Porphyre yezoensis
    • Nikaido I, Asamizu E, Nakajima M, Nakamura Y, Saga N, Tabata S (2000) Generation of 10,154 expressed sequence tags from a leafy gametophyte of a marine red alga, Porphyre yezoensis. DNA Res 7: 223-227
    • (2000) DNA Res , vol.7 , pp. 223-227
    • Nikaido, I.1    Asamizu, E.2    Nakajima, M.3    Nakamura, Y.4    Saga, N.5    Tabata, S.6
  • 39
    • 0002021422 scopus 로고    scopus 로고
    • The Origin and Evolution of Plastids and their Genomes
    • Doyle JJ (ed) Kluwer Academic Publishers, Boston
    • Palmer JD, Delwiche CF (1998) The Origin and Evolution of Plastids and their Genomes. In Doyle JJ (ed) Molecular Systematics of Plants II. Kluwer Academic Publishers, Boston, pp 375-409
    • (1998) Molecular Systematics of Plants II , pp. 375-409
    • Palmer, J.D.1    Delwiche, C.F.2
  • 40
    • 0034026047 scopus 로고    scopus 로고
    • Proteomics of the chloroplast: Systematic identification and targeting analysis of lumenal and peripheral thylakoid proteins
    • Peltier J-B, Friso G, Kalume DE, Roepstorff P, Nilsson F, Adamska I, van Wijk KJ (2000) Proteomics of the chloroplast: systematic identification and targeting analysis of lumenal and peripheral thylakoid proteins. Plant Cell 12: 319-341
    • (2000) Plant Cell , vol.12 , pp. 319-341
    • Peltier, J.-B.1    Friso, G.2    Kalume, D.E.3    Roepstorff, P.4    Nilsson, F.5    Adamska, I.6    Van Wijk, K.J.7
  • 41
    • 0034835934 scopus 로고    scopus 로고
    • Construction of long-transcript enriched cDNA libraries from submicrogram amounts of total RNAs by a universal PCR amplification method
    • Piao Y, Ko NT, Lim MK, Ko MSH (2001) Construction of long-transcript enriched cDNA libraries from submicrogram amounts of total RNAs by a universal PCR amplification method. Genome Res 11: 1553-1558
    • (2001) Genome Res , vol.11 , pp. 1553-1558
    • Piao, Y.1    Ko, N.T.2    Lim, M.K.3    Ko, M.S.H.4
  • 42
    • 0038718514 scopus 로고    scopus 로고
    • Horizontal transfer of functional nuclear genes between multicellular organisms
    • Pierce SK, Massey SE, Hanten JJ, Curtis NE (2003) Horizontal transfer of functional nuclear genes between multicellular organisms. Biol Bull 204: 237-240
    • (2003) Biol Bull , vol.204 , pp. 237-240
    • Pierce, S.K.1    Massey, S.E.2    Hanten, J.J.3    Curtis, N.E.4
  • 43
    • 51649139576 scopus 로고
    • Complete nucleotide sequence of the Porphyra purpurea chloroplast genome
    • Reith M, Munholland J (1995) Complete nucleotide sequence of the Porphyra purpurea chloroplast genome. Plant Mol Biol Rep 13: 333-335
    • (1995) Plant Mol Biol Rep , vol.13 , pp. 333-335
    • Reith, M.1    Munholland, J.2
  • 44
    • 0001584709 scopus 로고
    • Biochemistry of the Dinoflagellate Nucleus
    • Taylor FJR (ed) Blackwell Scientific Publishing, Oxford
    • Rizzo PJ (1987) Biochemistry of the Dinoflagellate Nucleus. In Taylor FJR (ed) The Biology of Dinoflagellates. Blackwell Scientific Publishing, Oxford, pp 143-173
    • (1987) The Biology of Dinoflagellates , pp. 143-173
    • Rizzo, P.J.1
  • 45
    • 0015515889 scopus 로고
    • Chromosomal proteins in the dinoflagellate alga Gyrodinium cohnii
    • Rizzo PJ, Noodén LD (1972) Chromosomal proteins in the dinoflagellate alga Gyrodinium cohnii. Science 176: 796-797
    • (1972) Science , vol.176 , pp. 796-797
    • Rizzo, P.J.1    Noodén, L.D.2
  • 46
    • 0030096623 scopus 로고    scopus 로고
    • Rubisco in marine symbiotic dinoflagellates: Form II enzymes in eukaryotic oxygenic phototrophs encoded by a nuclear multigene family
    • Rowan R, Whitney SM, Fowler A, Yellowlees D (1996) Rubisco in marine symbiotic dinoflagellates: form II enzymes in eukaryotic oxygenic phototrophs encoded by a nuclear multigene family. Plant Cell 8: 539-553
    • (1996) Plant Cell , vol.8 , pp. 539-553
    • Rowan, R.1    Whitney, S.M.2    Fowler, A.3    Yellowlees, D.4
  • 48
    • 17344395359 scopus 로고    scopus 로고
    • Chloroplast transit peptide prediction: A peek inside the black box
    • art. no.-e82
    • Schein AI, Kissinger JC, Ungar LH (2001) Chloroplast transit peptide prediction: a peek inside the black box. Nucleic Acids Res 29: art. no.-e82
    • (2001) Nucleic Acids Res , vol.29
    • Schein, A.I.1    Kissinger, J.C.2    Ungar, L.H.3
  • 50
    • 0025908149 scopus 로고
    • The troublesome parasites - Molecular and morphological evidence that Apicomplexa belong to the dinoflagellate-ciliate clade
    • Wolters J (1991) The troublesome parasites - molecular and morphological evidence that Apicomplexa belong to the dinoflagellate-ciliate clade. Biosystems 25: 75-83
    • (1991) Biosystems , vol.25 , pp. 75-83
    • Wolters, J.1
  • 51
    • 0033536215 scopus 로고    scopus 로고
    • Single gene circles in dinoflagellate chloroplast genomes
    • Zhang ZD, Green BR, Cavalier-Smith T (1999) Single gene circles in dinoflagellate chloroplast genomes. Nature 400: 155-159
    • (1999) Nature , vol.400 , pp. 155-159
    • Zhang, Z.D.1    Green, B.R.2    Cavalier-Smith, T.3
  • 52
    • 0035666657 scopus 로고    scopus 로고
    • Deciphering apicoplast targeting signals - Feature extraction from nuclear-encoded precursors of Plasmodium falciparum apicoplast proteins
    • Zuegge J, Ralph S, Schmucker M, McFadden GI, Schneider G (2001) Deciphering apicoplast targeting signals - feature extraction from nuclear-encoded precursors of Plasmodium falciparum apicoplast proteins. Gene 280: 19-26
    • (2001) Gene , vol.280 , pp. 19-26
    • Zuegge, J.1    Ralph, S.2    Schmucker, M.3    McFadden, G.I.4    Schneider, G.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.