-
1
-
-
0037516675
-
N-Hexane sensitivity of Escherichia coli due to low expression of imp/ostA encoding an 87kDa minor protein associated with the outer membrane
-
Abe S., Okutsu T., Nakajima H., Kakuda N., Ohtsu I., Aono R. n-Hexane sensitivity of Escherichia coli due to low expression of imp/ostA encoding an 87kDa minor protein associated with the outer membrane. Microbiology 2003, 149:1265-1273.
-
(2003)
Microbiology
, vol.149
, pp. 1265-1273
-
-
Abe, S.1
Okutsu, T.2
Nakajima, H.3
Kakuda, N.4
Ohtsu, I.5
Aono, R.6
-
2
-
-
77950629484
-
Metabolite stress and tolerance in the production of biofuels and chemicals: gene-expression-based systems analysis of butanol, butyrate, and acetate stresses in the anaerobe Clostridium acetobutylicum
-
Alsaker K.V., Paredes C., Papoutsakis E.T. Metabolite stress and tolerance in the production of biofuels and chemicals: gene-expression-based systems analysis of butanol, butyrate, and acetate stresses in the anaerobe Clostridium acetobutylicum. Biotechnol. Bioeng. 2010, 105:1131-1147.
-
(2010)
Biotechnol. Bioeng.
, vol.105
, pp. 1131-1147
-
-
Alsaker, K.V.1
Paredes, C.2
Papoutsakis, E.T.3
-
3
-
-
1642324901
-
Transcriptional analysis of spo0A overexpression in Clostridium acetobutylicum and its effect on the cell's response to butanol stress
-
Alsaker K.V., Spitzer T.R., Papoutsakis E.T. Transcriptional analysis of spo0A overexpression in Clostridium acetobutylicum and its effect on the cell's response to butanol stress. J. Bacteriol. 2004, 186:1959-1971.
-
(2004)
J. Bacteriol.
, vol.186
, pp. 1959-1971
-
-
Alsaker, K.V.1
Spitzer, T.R.2
Papoutsakis, E.T.3
-
4
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
-
Altschul S.F., Madden T.L., Schaffer A.A., Zhang J., Zhang Z., Miller W., Lipman D.J. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 1997, 25:3389-3402.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
5
-
-
85007772274
-
A close correlation between improvement of organic solvent tolerance levels and alteration of resistance toward low levels of multiple antibiotics in Escherichia coli
-
Aono R., Kobayashi M., Nakajima H., Kobayashi H. A close correlation between improvement of organic solvent tolerance levels and alteration of resistance toward low levels of multiple antibiotics in Escherichia coli. Biosci. Biotechnol. Biochem. 1995, 59:213-218.
-
(1995)
Biosci. Biotechnol. Biochem.
, vol.59
, pp. 213-218
-
-
Aono, R.1
Kobayashi, M.2
Nakajima, H.3
Kobayashi, H.4
-
6
-
-
0031930713
-
Involvement of outer membrane protein TolC, a possible member of the mar-sox regulon, in maintenance and improvement of organic solvent tolerance of Escherichia coli K-12
-
Aono R., Tsukagoshi N., Yamamoto M. Involvement of outer membrane protein TolC, a possible member of the mar-sox regulon, in maintenance and improvement of organic solvent tolerance of Escherichia coli K-12. J. Bacteriol. 1998, 180:938-944.
-
(1998)
J. Bacteriol.
, vol.180
, pp. 938-944
-
-
Aono, R.1
Tsukagoshi, N.2
Yamamoto, M.3
-
7
-
-
0032870104
-
Regulated interactions between partner and non-partner sensors and response regulators that control glycopeptide resistance gene expression in enterococci
-
Arthur M., Depardieu F., Courvalin P. Regulated interactions between partner and non-partner sensors and response regulators that control glycopeptide resistance gene expression in enterococci. Microbiology 1999, 145:1849-1858.
-
(1999)
Microbiology
, vol.145
, pp. 1849-1858
-
-
Arthur, M.1
Depardieu, F.2
Courvalin, P.3
-
8
-
-
0001441208
-
Effect of butanol challenge and temperature on lipid composition and membrane fluidity of butanol-tolerant Clostridium acetobutylicum
-
Baer S.H., Blaschek H.P., Smith T.L. Effect of butanol challenge and temperature on lipid composition and membrane fluidity of butanol-tolerant Clostridium acetobutylicum. Appl. Environ. Microbiol. 1987, 53:2854-2861.
-
(1987)
Appl. Environ. Microbiol.
, vol.53
, pp. 2854-2861
-
-
Baer, S.H.1
Blaschek, H.P.2
Smith, T.L.3
-
9
-
-
0020358856
-
Continuous production of acetone and butanol by Clostridium acetobutylicum in a two-stage phosphate limited chemostat
-
(Erratum, 217: 273, 1983)
-
Bahl H., Andersch W., Gottschalk G. Continuous production of acetone and butanol by Clostridium acetobutylicum in a two-stage phosphate limited chemostat. Eur. J. Appl. Microbiol. Biotechnol. 1982, 15:201-205. (Erratum, 217: 273, 1983).
-
(1982)
Eur. J. Appl. Microbiol. Biotechnol.
, vol.15
, pp. 201-205
-
-
Bahl, H.1
Andersch, W.2
Gottschalk, G.3
-
10
-
-
0028882778
-
Expression of heat shock genes in Clostridium acetobutylicum
-
Bahl H., Müller H., Behrens S., Joseph H., Narberhaus F. Expression of heat shock genes in Clostridium acetobutylicum. FEMS Microbiol. Rev. 1995, 17:341-348.
-
(1995)
FEMS Microbiol. Rev.
, vol.17
, pp. 341-348
-
-
Bahl, H.1
Müller, H.2
Behrens, S.3
Joseph, H.4
Narberhaus, F.5
-
11
-
-
1942475365
-
Crystal structure of the response regulator 02 receiver domain, the essential YycF two-component system of Streptococcus pneumoniae in both complexed and native states
-
Bent C.J., Isaacs N.W., Mitchell T.J., Riboldi-Tunnicliffe A. Crystal structure of the response regulator 02 receiver domain, the essential YycF two-component system of Streptococcus pneumoniae in both complexed and native states. J. Bacteriol. 2004, 186:2872-2879.
-
(2004)
J. Bacteriol.
, vol.186
, pp. 2872-2879
-
-
Bent, C.J.1
Isaacs, N.W.2
Mitchell, T.J.3
Riboldi-Tunnicliffe, A.4
-
12
-
-
76449099531
-
Peptidoglycan metabolism is controlled by the WalRK (YycFG) and PhoPR two-component systems in phosphate-limited Bacillus subtilis cells
-
Bisicchia P., Lioliou E., Noone D., Salzberg L.I., Botella E., Hübner S., Devine K.M. Peptidoglycan metabolism is controlled by the WalRK (YycFG) and PhoPR two-component systems in phosphate-limited Bacillus subtilis cells. Mol. Microbiol. 2010, 75:972-989.
-
(2010)
Mol. Microbiol.
, vol.75
, pp. 972-989
-
-
Bisicchia, P.1
Lioliou, E.2
Noone, D.3
Salzberg, L.I.4
Botella, E.5
Hübner, S.6
Devine, K.M.7
-
13
-
-
34248196414
-
Dynamics of gnomic-library enrichment and identification of solvent tolerance genes for Clostridium acetobutylicum
-
Borden J.R., Papoutsakis E.T. Dynamics of gnomic-library enrichment and identification of solvent tolerance genes for Clostridium acetobutylicum. Appl. Environ. Microbiol. 2007, 73:3061-3068.
-
(2007)
Appl. Environ. Microbiol.
, vol.73
, pp. 3061-3068
-
-
Borden, J.R.1
Papoutsakis, E.T.2
-
14
-
-
0022357670
-
Effects of butanol on Clostridium acetobutylicum
-
Bowles L.K., Ellefson W.L. Effects of butanol on Clostridium acetobutylicum. Appl. Environ. Microbiol. 1985, 50:1165-1170.
-
(1985)
Appl. Environ. Microbiol.
, vol.50
, pp. 1165-1170
-
-
Bowles, L.K.1
Ellefson, W.L.2
-
15
-
-
67650685558
-
An integrated network approach identifies the isobutanol response network of Escherichia coli
-
Brynildsen M.P., Liao J.C. An integrated network approach identifies the isobutanol response network of Escherichia coli. Mol. Syst. Biol. 2009, 5:277.
-
(2009)
Mol. Syst. Biol.
, vol.5
, pp. 277
-
-
Brynildsen, M.P.1
Liao, J.C.2
-
16
-
-
0034780806
-
Bacterial fatty acid biosynthesis: targets for antibacterial drug discovery
-
Campbell J.W., Cronan J.E. Bacterial fatty acid biosynthesis: targets for antibacterial drug discovery. Annu. Rev. Microbiol. 2001, 55:305-332.
-
(2001)
Annu. Rev. Microbiol.
, vol.55
, pp. 305-332
-
-
Campbell, J.W.1
Cronan, J.E.2
-
17
-
-
79955131848
-
Inactivation of a small heat shock protein affects cell morphology and membrane fluidity in Lactobacillus plantarum WCFS1
-
Capozzi V., Weidmann S., Fiocco D., Rieu A., Hols P., Guzzo J., Spano G. Inactivation of a small heat shock protein affects cell morphology and membrane fluidity in Lactobacillus plantarum WCFS1. Res. Microbiol. 2011, 162:419-425.
-
(2011)
Res. Microbiol.
, vol.162
, pp. 419-425
-
-
Capozzi, V.1
Weidmann, S.2
Fiocco, D.3
Rieu, A.4
Hols, P.5
Guzzo, J.6
Spano, G.7
-
18
-
-
0030922888
-
The genes for butanol and acetone formation in Clostridium acetobutylicum ATCC 824 reside on a large plasmid whose loss leads to degeneration of the strain
-
Cornillot E., Nair R.V., Papoutsakis E.T., Soucaille P. The genes for butanol and acetone formation in Clostridium acetobutylicum ATCC 824 reside on a large plasmid whose loss leads to degeneration of the strain. J. Bacteriol. 1997, 179:5442-5447.
-
(1997)
J. Bacteriol.
, vol.179
, pp. 5442-5447
-
-
Cornillot, E.1
Nair, R.V.2
Papoutsakis, E.T.3
Soucaille, P.4
-
19
-
-
0026554068
-
Autolysis of Clostridium acetobutylicum ATCC 824
-
Croux C., Canard B., Goma G., Soucaille P. Autolysis of Clostridium acetobutylicum ATCC 824. J. Gen. Microbiol. 1992, 138:861-869.
-
(1992)
J. Gen. Microbiol.
, vol.138
, pp. 861-869
-
-
Croux, C.1
Canard, B.2
Goma, G.3
Soucaille, P.4
-
20
-
-
8144225912
-
Improved stress tolerance of GroESL-overproducing Lactococcus lactis and probiotic Lactobacillus paracasei NFBC 338
-
Desmond C., Fitzgerald G.F., Stanton C., Ross R.P. Improved stress tolerance of GroESL-overproducing Lactococcus lactis and probiotic Lactobacillus paracasei NFBC 338. Appl. Environ. Microbiol. 2004, 70:5929-5936.
-
(2004)
Appl. Environ. Microbiol.
, vol.70
, pp. 5929-5936
-
-
Desmond, C.1
Fitzgerald, G.F.2
Stanton, C.3
Ross, R.P.4
-
21
-
-
23944493423
-
Genomic analysis of the protein secretion systems in Clostridium acetobutylicum ATCC 824
-
Desvaux M., Khan A., Scott-Tucker A., Chaudhuri R.R., Pallen M.J., Henderson I.R. Genomic analysis of the protein secretion systems in Clostridium acetobutylicum ATCC 824. Biochem. Biophys. Acta 2005, 1745:223-253.
-
(2005)
Biochem. Biophys. Acta
, vol.1745
, pp. 223-253
-
-
Desvaux, M.1
Khan, A.2
Scott-Tucker, A.3
Chaudhuri, R.R.4
Pallen, M.J.5
Henderson, I.R.6
-
22
-
-
2542580836
-
Comparison of the glutamate-, arginine- and lysine-dependent acid resistance systems in Escherichia coli O157:H7
-
Diez-Gonzalez F., Karaibrahimoglu Y. Comparison of the glutamate-, arginine- and lysine-dependent acid resistance systems in Escherichia coli O157:H7. J. Appl. Microbiol. 2004, 96:237-244.
-
(2004)
J. Appl. Microbiol.
, vol.96
, pp. 237-244
-
-
Diez-Gonzalez, F.1
Karaibrahimoglu, Y.2
-
23
-
-
1342286802
-
Gene-specific dye bias in microarray reference designs
-
Dombkowski A.A., Thibodeau B.J., Starcevic S.L., Novak R.F. Gene-specific dye bias in microarray reference designs. FEBS Lett. 2004, 560:120-124.
-
(2004)
FEBS Lett.
, vol.560
, pp. 120-124
-
-
Dombkowski, A.A.1
Thibodeau, B.J.2
Starcevic, S.L.3
Novak, R.F.4
-
24
-
-
19744376797
-
Contribution of the Mycobacterium tuberculosis MmpL protein family to virulence and drug resistance
-
Domenech P., Reed M.B., Barry C.E. Contribution of the Mycobacterium tuberculosis MmpL protein family to virulence and drug resistance. Infect. Immun. 2005, 73:3492-3501.
-
(2005)
Infect. Immun.
, vol.73
, pp. 3492-3501
-
-
Domenech, P.1
Reed, M.B.2
Barry, C.E.3
-
25
-
-
79955806186
-
Engineering microbial biofuel tolerance and export using efflux pumps
-
Dunlop M.J., Dossani Z.Y., Szmidt H.L., Chu H.C., Lee T.S., Keasling J.D., Hadi M.Z., Mukhopadhyay A. Engineering microbial biofuel tolerance and export using efflux pumps. Mol. Syst. Biol. 2011, 7:487.
-
(2011)
Mol. Syst. Biol.
, vol.7
, pp. 487
-
-
Dunlop, M.J.1
Dossani, Z.Y.2
Szmidt, H.L.3
Chu, H.C.4
Lee, T.S.5
Keasling, J.D.6
Hadi, M.Z.7
Mukhopadhyay, A.8
-
26
-
-
38149030843
-
Biobutanol: an attractive biofuel
-
Dürre P. Biobutanol: an attractive biofuel. Biotechnol. J. 2007, 2:1525-1534.
-
(2007)
Biotechnol. J.
, vol.2
, pp. 1525-1534
-
-
Dürre, P.1
-
27
-
-
41349120749
-
Fermentative butanol production: bulk chemical and biofuel
-
Dürre P. Fermentative butanol production: bulk chemical and biofuel. Ann. N. Y. Acad. Sci. 2008, 1125:353-362.
-
(2008)
Ann. N. Y. Acad. Sci.
, vol.1125
, pp. 353-362
-
-
Dürre, P.1
-
28
-
-
0142011056
-
Transcriptional regulation of drug efflux genes by EvgAS, a two-component system in Escherichia coli
-
Eguchi Y., Oshima T., Mori H., Aono R., Yamamoto K., Ishihama A., Utsumi R. Transcriptional regulation of drug efflux genes by EvgAS, a two-component system in Escherichia coli. Microbiology 2003, 149:2819-2828.
-
(2003)
Microbiology
, vol.149
, pp. 2819-2828
-
-
Eguchi, Y.1
Oshima, T.2
Mori, H.3
Aono, R.4
Yamamoto, K.5
Ishihama, A.6
Utsumi, R.7
-
29
-
-
0032441150
-
Cluster analysis and display of genome-wide expression patterns
-
Eisen M.B., Spellman P.T., Brown P.O., Botstein D. Cluster analysis and display of genome-wide expression patterns. Proc. Natl. Acad. Sci U.S.A. 1998, 95:14863-14868.
-
(1998)
Proc. Natl. Acad. Sci U.S.A.
, vol.95
, pp. 14863-14868
-
-
Eisen, M.B.1
Spellman, P.T.2
Brown, P.O.3
Botstein, D.4
-
30
-
-
0031757758
-
A two-component signal transduction system essential for growth of Bacillus subtilis: implications for anti-infective therapy
-
Fabret C., Hoch J.A. A two-component signal transduction system essential for growth of Bacillus subtilis: implications for anti-infective therapy. J. Bacteriol. 1998, 180:6375-6383.
-
(1998)
J. Bacteriol.
, vol.180
, pp. 6375-6383
-
-
Fabret, C.1
Hoch, J.A.2
-
31
-
-
70350376747
-
Escherichia coli unsaturated fatty acid synthesis: complex transcription of the fabA gene and in vivo identification of the essential reaction catalyzed by FabB
-
Feng Y., Cronan J.E. Escherichia coli unsaturated fatty acid synthesis: complex transcription of the fabA gene and in vivo identification of the essential reaction catalyzed by FabB. J. Biol. Chem. 2009, 284:29526-29535.
-
(2009)
J. Biol. Chem.
, vol.284
, pp. 29526-29535
-
-
Feng, Y.1
Cronan, J.E.2
-
32
-
-
44049091846
-
Biofuels - economic aspects
-
Festel G.W. Biofuels - economic aspects. Chem. Eng. Technol. 2008, 31:715-720.
-
(2008)
Chem. Eng. Technol.
, vol.31
, pp. 715-720
-
-
Festel, G.W.1
-
33
-
-
75549090603
-
The Pfam protein families database
-
Finn R.D., Mistry J., Tate J., Coggill P., Heger A., Pollington J.E., Gavin O.L., Gunesekaran P., Ceric G., Forslund K., Holm L., Sonnhammer E.L., Eddy S.R., Bateman A. The Pfam protein families database. Nucleic Acids Res. 2010, 38:D211-D222.
-
(2010)
Nucleic Acids Res.
, vol.38
-
-
Finn, R.D.1
Mistry, J.2
Tate, J.3
Coggill, P.4
Heger, A.5
Pollington, J.E.6
Gavin, O.L.7
Gunesekaran, P.8
Ceric, G.9
Forslund, K.10
Holm, L.11
Sonnhammer, E.L.12
Eddy, S.R.13
Bateman, A.14
-
34
-
-
36348946895
-
Improved adaptation to heat, cold, and solvent tolerance in Lactobacillus plantarum
-
Fiocco D., Capozzi V., Goffin P., Hols P., Spano G. Improved adaptation to heat, cold, and solvent tolerance in Lactobacillus plantarum. Appl. Microbiol. Biotechnol. 2007, 77:909-915.
-
(2007)
Appl. Microbiol. Biotechnol.
, vol.77
, pp. 909-915
-
-
Fiocco, D.1
Capozzi, V.2
Goffin, P.3
Hols, P.4
Spano, G.5
-
35
-
-
33746609376
-
Transcription of the pst operon of Clostridium acetobutylicum is dependent on phosphate concentration and pH
-
Fischer R.-J., Oehmcke S., Meyer U., Mix M., Schwarz K., Fiedler T., Bahl H. Transcription of the pst operon of Clostridium acetobutylicum is dependent on phosphate concentration and pH. J. Bacteriol. 2006, 188:5469-5478.
-
(2006)
J. Bacteriol.
, vol.188
, pp. 5469-5478
-
-
Fischer, R.-J.1
Oehmcke, S.2
Meyer, U.3
Mix, M.4
Schwarz, K.5
Fiedler, T.6
Bahl, H.7
-
36
-
-
0033940185
-
The essential two-component regulatory system encoded by yycF and yycG modulates expression of the ftsAZ operon in Bacillus subtilis
-
Fukuchi K., Kasahara Y., Asai K., Kobayashi K., Moriya S., Ogasawara N. The essential two-component regulatory system encoded by yycF and yycG modulates expression of the ftsAZ operon in Bacillus subtilis. Microbiology 2000, 146:1573-1583.
-
(2000)
Microbiology
, vol.146
, pp. 1573-1583
-
-
Fukuchi, K.1
Kasahara, Y.2
Asai, K.3
Kobayashi, K.4
Moriya, S.5
Ogasawara, N.6
-
37
-
-
78650924319
-
Genome-wide gene expression analysis of the switch between acidogenesis and solventogenesis in continuous cultures of Clostridium acetobutylicum
-
Grimmler C., Janssen H., Krausse D., Fischer R.J., Bahl H., Dürre P., Liebl W., Ehrenreich A. Genome-wide gene expression analysis of the switch between acidogenesis and solventogenesis in continuous cultures of Clostridium acetobutylicum. J. Mol. Microbiol. Biotechnol. 2011, 20:1-15.
-
(2011)
J. Mol. Microbiol. Biotechnol.
, vol.20
, pp. 1-15
-
-
Grimmler, C.1
Janssen, H.2
Krausse, D.3
Fischer, R.J.4
Bahl, H.5
Dürre, P.6
Liebl, W.7
Ehrenreich, A.8
-
38
-
-
0036282456
-
Northern, morphological, and fermantation analysis of spoOA inactivation and overexpression in Clostridium acetobutylicum ATCC 824
-
Harris L.M., Welker N.E., Papoutsakis E.T. Northern, morphological, and fermantation analysis of spoOA inactivation and overexpression in Clostridium acetobutylicum ATCC 824. J. Bacteriol. 2002, 184:3586-3597.
-
(2002)
J. Bacteriol.
, vol.184
, pp. 3586-3597
-
-
Harris, L.M.1
Welker, N.E.2
Papoutsakis, E.T.3
-
39
-
-
78651478840
-
A systems biology approach to investigate the effect of pH-induced gene regulation on solvent production by Clostridium acetobutylicum in continuous culture
-
Haus S., Jabbari S., Millat T., Janssen H., Fischer R.J., Bahl H., King J.R., Wolkenhauer O. A systems biology approach to investigate the effect of pH-induced gene regulation on solvent production by Clostridium acetobutylicum in continuous culture. BMC Syst. Biol. 2011, 5:10.
-
(2011)
BMC Syst. Biol.
, vol.5
, pp. 10
-
-
Haus, S.1
Jabbari, S.2
Millat, T.3
Janssen, H.4
Fischer, R.J.5
Bahl, H.6
King, J.R.7
Wolkenhauer, O.8
-
40
-
-
79960080446
-
Meta-analysis and functional validation of nutritional requirements of solventogenic clostridia growing under butanol stress conditions and coutilization of d-glucose and d-xylose
-
Heluane H., Evans M.R., Dagher S.F., Bruno-Bárcena J.M. Meta-analysis and functional validation of nutritional requirements of solventogenic clostridia growing under butanol stress conditions and coutilization of d-glucose and d-xylose. Appl. Environ. Microbiol. 2011, 77:4473-4485.
-
(2011)
Appl. Environ. Microbiol.
, vol.77
, pp. 4473-4485
-
-
Heluane, H.1
Evans, M.R.2
Dagher, S.F.3
Bruno-Bárcena, J.M.4
-
41
-
-
0022370898
-
Isolation and characterization of butanol-resistant mutants of Clostridium acetobutylicum
-
Hermann M., Fayolle F., Marchal R., Podvin L., Sebald M., Vandecasteele J.P. Isolation and characterization of butanol-resistant mutants of Clostridium acetobutylicum. Appl. Environ. Microbiol. 1985, 50:1238-1243.
-
(1985)
Appl. Environ. Microbiol.
, vol.50
, pp. 1238-1243
-
-
Hermann, M.1
Fayolle, F.2
Marchal, R.3
Podvin, L.4
Sebald, M.5
Vandecasteele, J.P.6
-
42
-
-
34147214716
-
Multiple molecular mechanisms for multidrug resistance transporters
-
Higgins C.F. Multiple molecular mechanisms for multidrug resistance transporters. Nature 2007, 446:749-757.
-
(2007)
Nature
, vol.446
, pp. 749-757
-
-
Higgins, C.F.1
-
43
-
-
27144469038
-
Continuous culture - making a comeback?
-
Hoskisson P.A., Hobbs G. Continuous culture - making a comeback?. Microbiology 2005, 151:3153-3159.
-
(2005)
Microbiology
, vol.151
, pp. 3153-3159
-
-
Hoskisson, P.A.1
Hobbs, G.2
-
44
-
-
0017250532
-
Adaptation of membrane lipids to alcohols
-
Ingham L.O. Adaptation of membrane lipids to alcohols. J. Bacteriol. 1976, 125:670-678.
-
(1976)
J. Bacteriol.
, vol.125
, pp. 670-678
-
-
Ingham, L.O.1
-
45
-
-
0025115111
-
Ethanol tolerance in bacteria
-
Ingham L.O. Ethanol tolerance in bacteria. Crit. Rev. Biotechnol. 1990, 9:305-319.
-
(1990)
Crit. Rev. Biotechnol.
, vol.9
, pp. 305-319
-
-
Ingham, L.O.1
-
46
-
-
77955320670
-
Identification of ortholog groups in KEGG/SSDB by considering domain structures
-
Itoh M., Nakaya A., Kanehisa M. Identification of ortholog groups in KEGG/SSDB by considering domain structures. Genome Inform. 2002, 13:342-343.
-
(2002)
Genome Inform.
, vol.13
, pp. 342-343
-
-
Itoh, M.1
Nakaya, A.2
Kanehisa, M.3
-
47
-
-
68149169546
-
The MmpL protein family
-
ASM Press, Washington, M. Daffe, J.-M. Reyrat (Eds.)
-
Jain M., Chow E.D., Cox J.S. The MmpL protein family. The Mycobacterial Cell Envelope 2008, 201-210. ASM Press, Washington. M. Daffe, J.-M. Reyrat (Eds.).
-
(2008)
The Mycobacterial Cell Envelope
, pp. 201-210
-
-
Jain, M.1
Chow, E.D.2
Cox, J.S.3
-
48
-
-
84863012205
-
Butanol production from renewable biomass: rediscovery of metabolic pathways and metabolic engineering
-
Jang Y.S., Lee J., Malaviya A., Seung D.Y., Cho J.H., Lee S.Y. Butanol production from renewable biomass: rediscovery of metabolic pathways and metabolic engineering. Biotechnol. J. 2011, 10.1002/biot.201100059.
-
(2011)
Biotechnol. J.
-
-
Jang, Y.S.1
Lee, J.2
Malaviya, A.3
Seung, D.Y.4
Cho, J.H.5
Lee, S.Y.6
-
49
-
-
77955559194
-
A proteomic and transcriptional view of acidogenic and solventogenic steady-state cells of Clostridium acetobutylicum in a chemostat culture
-
Janssen H., Döring C., Ehrenreich A., Voigt B., Hecker M., Bahl H., Fischer R.J. A proteomic and transcriptional view of acidogenic and solventogenic steady-state cells of Clostridium acetobutylicum in a chemostat culture. Appl. Microbiol. Biotechnol. 2010, 87:2209-2226.
-
(2010)
Appl. Microbiol. Biotechnol.
, vol.87
, pp. 2209-2226
-
-
Janssen, H.1
Döring, C.2
Ehrenreich, A.3
Voigt, B.4
Hecker, M.5
Bahl, H.6
Fischer, R.J.7
-
50
-
-
84865423798
-
-
A transcriptional study of acidogenic chemostat cells of Clostridium acetobutylicum - solvent stress caused by a transient n-butanol pulse. J. Biotechnol., in press.
-
Janssen, H., Grimmler, C., Ehrenreich, A., Bahl, H., Fischer, R.J., 2012. A transcriptional study of acidogenic chemostat cells of Clostridium acetobutylicum - solvent stress caused by a transient n-butanol pulse. J. Biotechnol., in press. http://dx.doi.org/10.1016/j.jbiotec.2012.03.027.
-
(2012)
-
-
Janssen, H.1
Grimmler, C.2
Ehrenreich, A.3
Bahl, H.4
Fischer, R.J.5
-
51
-
-
77950632521
-
The N-acetylmuramic acid 6-phosphate etherase gene promotes growth and cell differentiation of cyanobacteria under light-limiting conditions
-
Jiang H., Kong R., Xu X. The N-acetylmuramic acid 6-phosphate etherase gene promotes growth and cell differentiation of cyanobacteria under light-limiting conditions. J. Bacteriol. 2010, 192:2239-2245.
-
(2010)
J. Bacteriol.
, vol.192
, pp. 2239-2245
-
-
Jiang, H.1
Kong, R.2
Xu, X.3
-
52
-
-
0345863935
-
The KEGG resource for deciphering the genome
-
Kanehisa M., Goto S., Kawashima S., Okuno Y., Hattori M. The KEGG resource for deciphering the genome. Nucleic Acids Res. 2004, 32:D277-D280.
-
(2004)
Nucleic Acids Res.
, vol.32
-
-
Kanehisa, M.1
Goto, S.2
Kawashima, S.3
Okuno, Y.4
Hattori, M.5
-
53
-
-
0036289674
-
Salt stress and hyperosmotic stress regulate the expression of different sets of genes in Synechocystis sp. PCC 6803
-
Kanesaki Y., Suzuki I., Allakhverdiev S.I., Mikami K., Murata N. Salt stress and hyperosmotic stress regulate the expression of different sets of genes in Synechocystis sp. PCC 6803. Biochem. Biophys. Res. Commun. 2002, 290:339-348.
-
(2002)
Biochem. Biophys. Res. Commun.
, vol.290
, pp. 339-348
-
-
Kanesaki, Y.1
Suzuki, I.2
Allakhverdiev, S.I.3
Mikami, K.4
Murata, N.5
-
54
-
-
33645061765
-
Hypersaline stress induces the turnover of phosphatidylcholine and results in the synthesis of the renal osmoprotectant glycerophosphocholine in Saccharomyces cerevisiae
-
Kiewietdejonge A., Pitts M., Cabuhat L., Sherman C., Kladwang W., Miramontes G., Floresvillar J., Chan J., Ramirez R.M. Hypersaline stress induces the turnover of phosphatidylcholine and results in the synthesis of the renal osmoprotectant glycerophosphocholine in Saccharomyces cerevisiae. FEMS Yeast Res. 2006, 6:205-217.
-
(2006)
FEMS Yeast Res.
, vol.6
, pp. 205-217
-
-
Kiewietdejonge, A.1
Pitts, M.2
Cabuhat, L.3
Sherman, C.4
Kladwang, W.5
Miramontes, G.6
Floresvillar, J.7
Chan, J.8
Ramirez, R.M.9
-
55
-
-
21344436181
-
Do physiological roles foster persistence of drug/multidrug-efflux transporters? A case study
-
Krulwich T.A., Lewinson O., Padan E., Bibi E. Do physiological roles foster persistence of drug/multidrug-efflux transporters? A case study. Nat. Rev. Microbiol. 2005, 3:566-572.
-
(2005)
Nat. Rev. Microbiol.
, vol.3
, pp. 566-572
-
-
Krulwich, T.A.1
Lewinson, O.2
Padan, E.3
Bibi, E.4
-
56
-
-
0036952280
-
Proteomics characterization of novel spore proteins of Bacillus subtilis
-
Kuwana R., Kasahara Y., Fujibayashi M., Takamatsu H., Ogasawara N., Watabe K. Proteomics characterization of novel spore proteins of Bacillus subtilis. Microbiology 2002, 148:3971-3982.
-
(2002)
Microbiology
, vol.148
, pp. 3971-3982
-
-
Kuwana, R.1
Kasahara, Y.2
Fujibayashi, M.3
Takamatsu, H.4
Ogasawara, N.5
Watabe, K.6
-
57
-
-
51649108629
-
Fermentative butanol production by clostridia
-
Lee S.Y., Park J.H., Jang S.H., Nielsen L.K., Kim J., Jung K.S. Fermentative butanol production by clostridia. Biotechnol. Bioeng. 2008, 101:209-228.
-
(2008)
Biotechnol. Bioeng.
, vol.101
, pp. 209-228
-
-
Lee, S.Y.1
Park, J.H.2
Jang, S.H.3
Nielsen, L.K.4
Kim, J.5
Jung, K.S.6
-
58
-
-
0023088579
-
Changes in membrane lipid composition of Clostridium acetobutylicum during acetone-butanol fermentation: effects of solvents, growth temperature and pH
-
Lepage C., Fayolle F., Hermann M., Vandecasteele J.P. Changes in membrane lipid composition of Clostridium acetobutylicum during acetone-butanol fermentation: effects of solvents, growth temperature and pH. Microbiology 1987, 133:103-110.
-
(1987)
Microbiology
, vol.133
, pp. 103-110
-
-
Lepage, C.1
Fayolle, F.2
Hermann, M.3
Vandecasteele, J.P.4
-
59
-
-
35649017663
-
Effect of a small, acid-soluble spore protein from Clostridium perfringens on the resistance properties of Bacillus subtilis spores
-
Leyva-Illades J.F., Setlow B., Sarker M.R., Setlow P. Effect of a small, acid-soluble spore protein from Clostridium perfringens on the resistance properties of Bacillus subtilis spores. J. Bacteriol. 2007, 189:7927-7931.
-
(2007)
J. Bacteriol.
, vol.189
, pp. 7927-7931
-
-
Leyva-Illades, J.F.1
Setlow, B.2
Sarker, M.R.3
Setlow, P.4
-
60
-
-
0020678924
-
Butanol production by a butanol-tolerant strain of Clostridium acetobutylicum in extruded corn broth
-
Lin Y.-L., Blaschek H.P. Butanol production by a butanol-tolerant strain of Clostridium acetobutylicum in extruded corn broth. Appl. Environ. Microbiol. 1983, 45:966-973.
-
(1983)
Appl. Environ. Microbiol.
, vol.45
, pp. 966-973
-
-
Lin, Y.-L.1
Blaschek, H.P.2
-
61
-
-
2342455737
-
Product diversity and regulation of type II fatty acid synthases
-
Lu Y.J., Zhang Y.M., Rock C.O. Product diversity and regulation of type II fatty acid synthases. Biochem. Cell Biol. 2004, 82:145-155.
-
(2004)
Biochem. Cell Biol.
, vol.82
, pp. 145-155
-
-
Lu, Y.J.1
Zhang, Y.M.2
Rock, C.O.3
-
62
-
-
4944240742
-
Control of membrane lipid fluidity by molecular thermosensors
-
Mansilla M.C., Cybulski L.E., Albanesi D., de Mendoza D. Control of membrane lipid fluidity by molecular thermosensors. J. Bacteriol. 2004, 186:6681-6688.
-
(2004)
J. Bacteriol.
, vol.186
, pp. 6681-6688
-
-
Mansilla, M.C.1
Cybulski, L.E.2
Albanesi, D.3
de Mendoza, D.4
-
63
-
-
79954526956
-
Comparative analysis on the membrane proteome of Clostridium acetobutylicum wild type strain and its butanol-tolerant mutant
-
Mao S., Luo Y., Bao G., Zhang Y., Li Y., Ma Y. Comparative analysis on the membrane proteome of Clostridium acetobutylicum wild type strain and its butanol-tolerant mutant. Mol. Biosyst. 2011, 7:1660-1677.
-
(2011)
Mol. Biosyst.
, vol.7
, pp. 1660-1677
-
-
Mao, S.1
Luo, Y.2
Bao, G.3
Zhang, Y.4
Li, Y.5
Ma, Y.6
-
64
-
-
77954604280
-
Proteome reference map and comparative proteomic analysis between a wild type Clostridium acetobutylicum DSM 1731 and its mutant with enhanced butanol tolerance and butanol yield
-
Mao S., Luo Y., Zhang T., Li J., Bao G., Zhu Y., Chen Z., Zhang Y., Li Y., Ma Y. Proteome reference map and comparative proteomic analysis between a wild type Clostridium acetobutylicum DSM 1731 and its mutant with enhanced butanol tolerance and butanol yield. J. Proteome Res. 2010, 9:3046-3061.
-
(2010)
J. Proteome Res.
, vol.9
, pp. 3046-3061
-
-
Mao, S.1
Luo, Y.2
Zhang, T.3
Li, J.4
Bao, G.5
Zhu, Y.6
Chen, Z.7
Zhang, Y.8
Li, Y.9
Ma, Y.10
-
65
-
-
33644873697
-
The integrated microbial genomes (IMG) system
-
Markowitz V.M., Korzeniewski F., Palaniappan K., Szeto E., Werner G., Padki A., Zhao X., Dubchak I., Hugenholtz P., Anderson I., Lykidis A., Mavromatis K., Ivanova N., Kyrpides N.C. The integrated microbial genomes (IMG) system. Nucleic Acids Res. 2006, 34:D344-D348.
-
(2006)
Nucleic Acids Res.
, vol.34
-
-
Markowitz, V.M.1
Korzeniewski, F.2
Palaniappan, K.3
Szeto, E.4
Werner, G.5
Padki, A.6
Zhao, X.7
Dubchak, I.8
Hugenholtz, P.9
Anderson, I.10
Lykidis, A.11
Mavromatis, K.12
Ivanova, N.13
Kyrpides, N.C.14
-
66
-
-
0032980766
-
Role in cell permeability of an essential two-component system in Staphylococcus aureus
-
Martin P.K., Tong L., DongXu S., Biek D.P., Schmid M.B. Role in cell permeability of an essential two-component system in Staphylococcus aureus. J. Bacteriol. 1999, 181:3666-3673.
-
(1999)
J. Bacteriol.
, vol.181
, pp. 3666-3673
-
-
Martin, P.K.1
Tong, L.2
DongXu, S.3
Biek, D.P.4
Schmid, M.B.5
-
67
-
-
79953069562
-
Evolution combined with genomic study elucidates genetic bases of isobutanol tolerance in Escherichia coli
-
Minty J.J., Lesnefsky A.A., Lin F., Chen Y., Zaroff T.A., Veloso A.B., Xie B., McConnell C.A., Ward R.J., Schwartz D.R., Rouillard J.M., Gao Y., Gulari E., Lin X.N. Evolution combined with genomic study elucidates genetic bases of isobutanol tolerance in Escherichia coli. Microb. Cell Fact 2011, 10:18.
-
(2011)
Microb. Cell Fact
, vol.10
, pp. 18
-
-
Minty, J.J.1
Lesnefsky, A.A.2
Lin, F.3
Chen, Y.4
Zaroff, T.A.5
Veloso, A.B.6
Xie, B.7
McConnell, C.A.8
Ward, R.J.9
Schwartz, D.R.10
Rouillard, J.M.11
Gao, Y.12
Gulari, E.13
Lin, X.N.14
-
68
-
-
15244344437
-
Evidence that the essential response regulator YycF in Streptococcus pneumoniae modulates expression of fatty acid biosynthesis genes and alters membrane composition
-
Mohedano M.L., Overweg K., de la Fuente A., Reuter M., Altabe S., Mulholland F., de Mendoza D., López P., Wells J.M. Evidence that the essential response regulator YycF in Streptococcus pneumoniae modulates expression of fatty acid biosynthesis genes and alters membrane composition. J. Bacteriol. 2005, 187:2357-2367.
-
(2005)
J. Bacteriol.
, vol.187
, pp. 2357-2367
-
-
Mohedano, M.L.1
Overweg, K.2
de la Fuente, A.3
Reuter, M.4
Altabe, S.5
Mulholland, F.6
de Mendoza, D.7
López, P.8
Wells, J.M.9
-
69
-
-
0003720391
-
-
Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, USA
-
Morimoto R.I., Tissières A., Georgopoulos C. The Biology of Heat Shock Proteins and Molecular Chaperones 1994, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, USA.
-
(1994)
The Biology of Heat Shock Proteins and Molecular Chaperones
-
-
Morimoto, R.I.1
Tissières, A.2
Georgopoulos, C.3
-
70
-
-
0026639389
-
Cloning, sequencing, and molecular analysis of the groESL operon of Clostridium acetobutylicum
-
Narberhaus F., Bahl H. Cloning, sequencing, and molecular analysis of the groESL operon of Clostridium acetobutylicum. J. Bacteriol. 1992, 174:3282-3289.
-
(1992)
J. Bacteriol.
, vol.174
, pp. 3282-3289
-
-
Narberhaus, F.1
Bahl, H.2
-
71
-
-
77953022341
-
A comparative view of metabolite and substrate stress and tolerance in microbial bioprocessing: from biofuels and chemicals, to biocatalysis and bioremediation
-
Nicolaou S.A., Gaida S.M., Papoutsakis E.T. A comparative view of metabolite and substrate stress and tolerance in microbial bioprocessing: from biofuels and chemicals, to biocatalysis and bioremediation. Metab. Eng. 2010, 12:307-331.
-
(2010)
Metab. Eng.
, vol.12
, pp. 307-331
-
-
Nicolaou, S.A.1
Gaida, S.M.2
Papoutsakis, E.T.3
-
72
-
-
0034902930
-
Genome sequence and comparative analysis of the solvent-producing bacterium Clostridium acetobutylicum
-
Sequencing Center Production, Finishing, Bioinformatics Teams
-
Nölling J., Breton G., Omelchenko M.V., Makarova K.S., Zeng Q., Gibson R., Mei Lee H., Dubios J., Qiu D., Hitti J., Wolf Y.I., Tatusov R.L., Sabathe F., Doucette-Stamm L., Soucaille P., Daly M.J., Bennett G.N., Koonin E.V., Smith D.R. Genome sequence and comparative analysis of the solvent-producing bacterium Clostridium acetobutylicum. J. Bacteriol. 2001, 183:4823-4838. Sequencing Center Production, Finishing, Bioinformatics Teams.
-
(2001)
J. Bacteriol.
, vol.183
, pp. 4823-4838
-
-
Nölling, J.1
Breton, G.2
Omelchenko, M.V.3
Makarova, K.S.4
Zeng, Q.5
Gibson, R.6
Mei Lee, H.7
Dubios, J.8
Qiu, D.9
Hitti, J.10
Wolf, Y.I.11
Tatusov, R.L.12
Sabathe, F.13
Doucette-Stamm, L.14
Soucaille, P.15
Daly, M.J.16
Bennett, G.N.17
Koonin, E.V.18
Smith, D.R.19
-
73
-
-
0025344277
-
Isolation of prokaryotic RNA and detection of specific mRNA with biotinylated probes
-
Oelmüller U., Krüger N., Steinbüchel A., Freidrich C.G. Isolation of prokaryotic RNA and detection of specific mRNA with biotinylated probes. J. Microbiol. Methods 1990, 11:73-81.
-
(1990)
J. Microbiol. Methods
, vol.11
, pp. 73-81
-
-
Oelmüller, U.1
Krüger, N.2
Steinbüchel, A.3
Freidrich, C.G.4
-
75
-
-
53049099975
-
Response regulator YycF essential for bacterial growth: X-ray crystal structure of the DNA-binding domain and its PhoB-like DNA recognition motif
-
Okajima T., Doi A., Okada A., Gotoh Y., Tanizawa K., Utsumi R. Response regulator YycF essential for bacterial growth: X-ray crystal structure of the DNA-binding domain and its PhoB-like DNA recognition motif. FEBS Lett. 2008, 582:3434-3438.
-
(2008)
FEBS Lett.
, vol.582
, pp. 3434-3438
-
-
Okajima, T.1
Doi, A.2
Okada, A.3
Gotoh, Y.4
Tanizawa, K.5
Utsumi, R.6
-
76
-
-
0037398732
-
Missing genes in metabolic pathways: a comparative genomics approach
-
Osterman A., Overbeek R. Missing genes in metabolic pathways: a comparative genomics approach. Curr. Opin. Chem. Biol. 2003, 7:238-251.
-
(2003)
Curr. Opin. Chem. Biol.
, vol.7
, pp. 238-251
-
-
Osterman, A.1
Overbeek, R.2
-
77
-
-
0021957625
-
Regulation and butanol inhibition of d-xylose and d-glucose uptake in Clostridium acetobutylicum
-
Ounine K., Petitdemange H., Raval G., Gay R. Regulation and butanol inhibition of d-xylose and d-glucose uptake in Clostridium acetobutylicum. Appl. Environ. Microbiol. 1985, 49:874-878.
-
(1985)
Appl. Environ. Microbiol.
, vol.49
, pp. 874-878
-
-
Ounine, K.1
Petitdemange, H.2
Raval, G.3
Gay, R.4
-
78
-
-
25644458211
-
The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes
-
Overbeek R., Begley T., Butler R.M., Choudhuri J.V., Chuang H.-Y., Cohoon M., de Crécy-Lagard V., Diaz N., Disz T., Edwards R., Fonstein M., Frank E.D., Gerdes S., Glass E.M., Goesmann A., Hanson A., Iwata-Reuyl D., Jensen R., Jamshidi N., Krause L., Kubal M., Larsen N., Linke B., McHardy A.C., Meyer F., Neuweger H., Olsen G., Olson R., Osterman A., Portnoy V., Pusch G.D., Rodionov D.A., Rückert C., Steiner J., Stevens R., Thiele I., Vassieva O., Ye Y., Zagnitko O., Vonstein V. The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes. Nucleic Acids Res. 2005, 33:5691-5702.
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 5691-5702
-
-
Overbeek, R.1
Begley, T.2
Butler, R.M.3
Choudhuri, J.V.4
Chuang, H.-Y.5
Cohoon, M.6
de Crécy-Lagard, V.7
Diaz, N.8
Disz, T.9
Edwards, R.10
Fonstein, M.11
Frank, E.D.12
Gerdes, S.13
Glass, E.M.14
Goesmann, A.15
Hanson, A.16
Iwata-Reuyl, D.17
Jensen, R.18
Jamshidi, N.19
Krause, L.20
Kubal, M.21
Larsen, N.22
Linke, B.23
McHardy, A.C.24
Meyer, F.25
Neuweger, H.26
Olsen, G.27
Olson, R.28
Osterman, A.29
Portnoy, V.30
Pusch, G.D.31
Rodionov, D.A.32
Rückert, C.33
Steiner, J.34
Stevens, R.35
Thiele, I.36
Vassieva, O.37
Ye, Y.38
Zagnitko, O.39
Vonstein, V.40
more..
-
79
-
-
30544443489
-
A comparative genomic view of clostridial sporulation and physiology
-
Paredes C.J., Alsaker K.V., Papoutsakis E.T. A comparative genomic view of clostridial sporulation and physiology. Nat. Rev. Microbiol. 2005, 3:969-978.
-
(2005)
Nat. Rev. Microbiol.
, vol.3
, pp. 969-978
-
-
Paredes, C.J.1
Alsaker, K.V.2
Papoutsakis, E.T.3
-
80
-
-
3042565140
-
Transcriptional organization of the Clostridium acetobutylicum genome
-
Paredes C.J., Rigoutsos I., Papoutsakis E.T. Transcriptional organization of the Clostridium acetobutylicum genome. Nucleic Acids Res. 2004, 32:1973-1981.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 1973-1981
-
-
Paredes, C.J.1
Rigoutsos, I.2
Papoutsakis, E.T.3
-
82
-
-
0025113660
-
Induction of heat shock proteins during initiation of solvent formation in Clostridium acetobutylicum
-
Pich A., Narberhaus F., Bahl H. Induction of heat shock proteins during initiation of solvent formation in Clostridium acetobutylicum. Appl. Microbiol. Biotechnol. 1990, 33:697-704.
-
(1990)
Appl. Microbiol. Biotechnol.
, vol.33
, pp. 697-704
-
-
Pich, A.1
Narberhaus, F.2
Bahl, H.3
-
83
-
-
33846057724
-
NCBI reference sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts, and proteins
-
Pruitt K.D., Tatusova T., Maglott D.R. NCBI reference sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts, and proteins. Nucleic Acids Res. 2007, 35:D61-D65.
-
(2007)
Nucleic Acids Res.
, vol.35
-
-
Pruitt, K.D.1
Tatusova, T.2
Maglott, D.R.3
-
85
-
-
66249119393
-
Lipoteichoic acid biosynthesis: two steps forwards, one step sideways?
-
Rahman O., Dover L.G., Sutcliffe I.C. Lipoteichoic acid biosynthesis: two steps forwards, one step sideways?. Trends Microbiol. 2009, 17:219-225.
-
(2009)
Trends Microbiol.
, vol.17
, pp. 219-225
-
-
Rahman, O.1
Dover, L.G.2
Sutcliffe, I.C.3
-
86
-
-
0036405482
-
Mechanisms of solvent tolerance in gram-negative bacteria
-
Ramos J.L., Duque E., Gallegos M.T., Godoy P., Ramos-Gonzalez M.I., Rojas A., Teran W., Segura A. Mechanisms of solvent tolerance in gram-negative bacteria. Annu. Rev. Microbiol. 2002, 56:743-768.
-
(2002)
Annu. Rev. Microbiol.
, vol.56
, pp. 743-768
-
-
Ramos, J.L.1
Duque, E.2
Gallegos, M.T.3
Godoy, P.4
Ramos-Gonzalez, M.I.5
Rojas, A.6
Teran, W.7
Segura, A.8
-
87
-
-
79956141388
-
Location, synthesis and function of glycolipids and polyglycerolphosphate lipoteichoic acid in Gram-positive bacteria of the phylum Firmicutes
-
Reichmann N.T., Gründling A. Location, synthesis and function of glycolipids and polyglycerolphosphate lipoteichoic acid in Gram-positive bacteria of the phylum Firmicutes. FEMS Microbiol. Lett. 2011, 319:97-105.
-
(2011)
FEMS Microbiol. Lett.
, vol.319
, pp. 97-105
-
-
Reichmann, N.T.1
Gründling, A.2
-
88
-
-
79952432805
-
Genomic library screens for genes involved in n-butanol tolerance in Escherichia coli
-
Reyes L.H., Almario M.P., Kao K.C. Genomic library screens for genes involved in n-butanol tolerance in Escherichia coli. PLoS One 2011, 6:e17678.
-
(2011)
PLoS One
, vol.6
-
-
Reyes, L.H.1
Almario, M.P.2
Kao, K.C.3
-
89
-
-
77749245785
-
Functional genomic study of exogenous n-butanol stress in Escherichia coli
-
Rutherford B.J., Dahl R.H., Price R.E., Szmidt H.L., Benke P.I., Mukhopadhyay A., Keasling J.D. Functional genomic study of exogenous n-butanol stress in Escherichia coli. Appl. Environ. Microbiol. 2010, 76:1935-1945.
-
(2010)
Appl. Environ. Microbiol.
, vol.76
, pp. 1935-1945
-
-
Rutherford, B.J.1
Dahl, R.H.2
Price, R.E.3
Szmidt, H.L.4
Benke, P.I.5
Mukhopadhyay, A.6
Keasling, J.D.7
-
90
-
-
0033635022
-
Artemis: sequence visualization and annotation
-
Rutherford K., Parkhill J., Crook J., Horsnell T., Rice P., Rajandream M.-A., Barrell B. Artemis: sequence visualization and annotation. Bioinformatics 2000, 16:944-945.
-
(2000)
Bioinformatics
, vol.16
, pp. 944-945
-
-
Rutherford, K.1
Parkhill, J.2
Crook, J.3
Horsnell, T.4
Rice, P.5
Rajandream, M.-A.6
Barrell, B.7
-
91
-
-
58149202169
-
The Transporter Classification Database: recent advances
-
Saier M.H., Yen M.R., Noto K., Tamang D.G., Elkan C. The Transporter Classification Database: recent advances. Nucleic Acids Res. 2009, 37:D274-D278.
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Saier, M.H.1
Yen, M.R.2
Noto, K.3
Tamang, D.G.4
Elkan, C.5
-
92
-
-
0027252458
-
Sequence and molecular characterization of a DNA region encoding a small heat shock protein of Clostridium acetobutylicum
-
Sauer U., Dürre P. Sequence and molecular characterization of a DNA region encoding a small heat shock protein of Clostridium acetobutylicum. J. Bacteriol. 1993, 175:3394-3400.
-
(1993)
J. Bacteriol.
, vol.175
, pp. 3394-3400
-
-
Sauer, U.1
Dürre, P.2
-
93
-
-
0002547666
-
Regulation and function of heat-inducible genes in Bacillus subtilis
-
ASM Press, Washington, DC, A. Sonenshein (Ed.)
-
Schumann W., Hecker M., Msadek T. Regulation and function of heat-inducible genes in Bacillus subtilis. Bacillus subtilis and Its Closest Relatives: From Genes to Cells 2002, 359-368. ASM Press, Washington, DC. A. Sonenshein (Ed.).
-
(2002)
Bacillus subtilis and Its Closest Relatives: From Genes to Cells
, pp. 359-368
-
-
Schumann, W.1
Hecker, M.2
Msadek, T.3
-
94
-
-
0033140330
-
Multiple responses of Gram-negative bacteria to organic solvents
-
Segura A., Duque E., Mosqueda G., Ramos J.L., Junker F. Multiple responses of Gram-negative bacteria to organic solvents. Environ. Microbiol. 1999, 1:191-198.
-
(1999)
Environ. Microbiol.
, vol.1
, pp. 191-198
-
-
Segura, A.1
Duque, E.2
Mosqueda, G.3
Ramos, J.L.4
Junker, F.5
-
95
-
-
57449087447
-
Transcriptional analysis of Clostridium beijerinckii NCIMB 8052 and the hyper-butanol-producing mutant BA101 during the shift from acidogenesis to solventogenesis
-
Shi Z., Blaschek H.P. Transcriptional analysis of Clostridium beijerinckii NCIMB 8052 and the hyper-butanol-producing mutant BA101 during the shift from acidogenesis to solventogenesis. Appl. Environ. Microbiol. 2008, 74:7709-7714.
-
(2008)
Appl. Environ. Microbiol.
, vol.74
, pp. 7709-7714
-
-
Shi, Z.1
Blaschek, H.P.2
-
96
-
-
79955623105
-
D-2,3-butanediol production due to heterologous expression of an acetoin reductase in Clostridium acetobutylicum
-
Siemerink M.A.J., Kuit W., López Contreras A.M., Eggink G., van der Oost J., Kengen S.W.M. D-2,3-butanediol production due to heterologous expression of an acetoin reductase in Clostridium acetobutylicum. Appl. Environ. Microbiol. 2011, 77:2582-2588.
-
(2011)
Appl. Environ. Microbiol.
, vol.77
, pp. 2582-2588
-
-
Siemerink, M.A.J.1
Kuit, W.2
López Contreras, A.M.3
Eggink, G.4
van der Oost, J.5
Kengen, S.W.M.6
-
97
-
-
0001380883
-
Homeoviscous adaptation - a homeostatic process that regulates the viscosity of membrane lipids in Escherichia coli
-
Sinensky M. Homeoviscous adaptation - a homeostatic process that regulates the viscosity of membrane lipids in Escherichia coli. Proc. Natl. Acad. Sci U.S.A. 1974, 71:522-525.
-
(1974)
Proc. Natl. Acad. Sci U.S.A.
, vol.71
, pp. 522-525
-
-
Sinensky, M.1
-
98
-
-
0034887171
-
Polyketide biosynthesis: a millennium review
-
Staunton J., Weissman K.J. Polyketide biosynthesis: a millennium review. Nat. Prod. Rep. 2001, 18:380-416.
-
(2001)
Nat. Prod. Rep.
, vol.18
, pp. 380-416
-
-
Staunton, J.1
Weissman, K.J.2
-
99
-
-
79955011057
-
Multiple orphan histidine kinases interact directly with Spo0A to control the initiation of endospore formation in Clostridium acetobutylicum
-
Steiner E., Dago A.E., Young D.I., Heap J.T., Minton N.P., Hoch J.A., Young M. Multiple orphan histidine kinases interact directly with Spo0A to control the initiation of endospore formation in Clostridium acetobutylicum. Mol. Microbiol. 2011, 80:641-654.
-
(2011)
Mol. Microbiol.
, vol.80
, pp. 641-654
-
-
Steiner, E.1
Dago, A.E.2
Young, D.I.3
Heap, J.T.4
Minton, N.P.5
Hoch, J.A.6
Young, M.7
-
102
-
-
0042902833
-
The COG database: an updated version includes eukaryotes
-
Tatusov R.L., Fedorova N.D., Jackson J.D., Jacobs A.R., Kiryutin B., Koonin E.V., Krylov D.M., Mazumder R., Mekhedov S.L., Nikolskaya A.N., Rao B.S., Smirnov S., Sverdlov A.V., Vasudevan S., Wolf Y.I., Yin J.J., Natale D.A. The COG database: an updated version includes eukaryotes. BMC Bioinform. 2003, 4:41.
-
(2003)
BMC Bioinform.
, vol.4
, pp. 41
-
-
Tatusov, R.L.1
Fedorova, N.D.2
Jackson, J.D.3
Jacobs, A.R.4
Kiryutin, B.5
Koonin, E.V.6
Krylov, D.M.7
Mazumder, R.8
Mekhedov, S.L.9
Nikolskaya, A.N.10
Rao, B.S.11
Smirnov, S.12
Sverdlov, A.V.13
Vasudevan, S.14
Wolf, Y.I.15
Yin, J.J.16
Natale, D.A.17
-
103
-
-
0030660581
-
A genomic perspective on protein families
-
Tatusov R.L., Koonin E.V., Lipman D.J. A genomic perspective on protein families. Science 1997, 278:631-637.
-
(1997)
Science
, vol.278
, pp. 631-637
-
-
Tatusov, R.L.1
Koonin, E.V.2
Lipman, D.J.3
-
104
-
-
0032708648
-
Analysis of the proteome of Mycobacterium tuberculosis in silico
-
Tekaia F., Gordon S.V., Garnier T., Brosch R., Barrell B.G., Cole S.T. Analysis of the proteome of Mycobacterium tuberculosis in silico. Tuber. Lung Dis. 1999, 79:329-342.
-
(1999)
Tuber. Lung Dis.
, vol.79
, pp. 329-342
-
-
Tekaia, F.1
Gordon, S.V.2
Garnier, T.3
Brosch, R.4
Barrell, B.G.5
Cole, S.T.6
-
105
-
-
0022538191
-
Intracellular conditions required for initiation of solvent production by Clostridium acetobutylicum
-
Terracciano J.S., Kashket E.R. Intracellular conditions required for initiation of solvent production by Clostridium acetobutylicum. Appl. Environ. Microbiol. 1986, 52:86-91.
-
(1986)
Appl. Environ. Microbiol.
, vol.52
, pp. 86-91
-
-
Terracciano, J.S.1
Kashket, E.R.2
-
106
-
-
0034069495
-
Gene ontology: tool for the unification of biology
-
The Gene Ontology Consortium
-
The Gene Ontology Consortium Gene ontology: tool for the unification of biology. Nat. Genet. 2000, 25:25-29.
-
(2000)
Nat. Genet.
, vol.25
, pp. 25-29
-
-
-
107
-
-
78651319979
-
Ongoing and future developments at the Universal Protein Resource
-
The UniProt Consortium
-
The UniProt Consortium Ongoing and future developments at the Universal Protein Resource. Nucleic Acids Res. 2011, 39:D214-D219.
-
(2011)
Nucleic Acids Res.
, vol.39
-
-
-
108
-
-
1642396325
-
Transcriptional analysis of butanol stress and tolerance in Clostridium acetobutylicum
-
Tomas C.A., Beamish J., Papoutsakis E.T. Transcriptional analysis of butanol stress and tolerance in Clostridium acetobutylicum. J. Bacteriol. 2004, 186:2006-2018.
-
(2004)
J. Bacteriol.
, vol.186
, pp. 2006-2018
-
-
Tomas, C.A.1
Beamish, J.2
Papoutsakis, E.T.3
-
109
-
-
0041527249
-
Overexpression of groESL in Clostridium acetobutylicum results in increased solvent production and tolerance, prolonged metabolism, and changes in the cell's transcriptional program
-
Tomas C.A., Welker N.E., Papoutsakis E.T. Overexpression of groESL in Clostridium acetobutylicum results in increased solvent production and tolerance, prolonged metabolism, and changes in the cell's transcriptional program. Appl. Environ. Microbiol. 2003, 69:4951-4965.
-
(2003)
Appl. Environ. Microbiol.
, vol.69
, pp. 4951-4965
-
-
Tomas, C.A.1
Welker, N.E.2
Papoutsakis, E.T.3
-
110
-
-
84862840939
-
Clostridia: the importance of their exceptional substrate and metabolite diversity for biofuel and biorefinery applications
-
Tracy B.P., Jones S.W., Fast A.G., Indurthi D.C., Papoutsakis E.T. Clostridia: the importance of their exceptional substrate and metabolite diversity for biofuel and biorefinery applications. Curr. Opin. Biotechnol. 2011, 10.1016/j.copbio.2011.1010.1008.
-
(2011)
Curr. Opin. Biotechnol.
-
-
Tracy, B.P.1
Jones, S.W.2
Fast, A.G.3
Indurthi, D.C.4
Papoutsakis, E.T.5
-
111
-
-
0033170990
-
The RND permease superfamily: an ancient, ubiquitous and diverse family that includes human disease and development proteins
-
Tseng T.T., Gratwick K.S., Kollman J., Park D., Nies D.H., Goffeau A., Saier M.H. The RND permease superfamily: an ancient, ubiquitous and diverse family that includes human disease and development proteins. J. Mol. Microbiol. Biotechnol. 1999, 1:107-125.
-
(1999)
J. Mol. Microbiol. Biotechnol.
, vol.1
, pp. 107-125
-
-
Tseng, T.T.1
Gratwick, K.S.2
Kollman, J.3
Park, D.4
Nies, D.H.5
Goffeau, A.6
Saier, M.H.7
-
112
-
-
32444443104
-
MurQ etherase is required by Escherichia coli in order to metabolize anhydro-N-acetylmuramic acid obtained either from the environment or from its own cell wall
-
Uehara T., Suefuji K., Jaeger T., Mayer C., Park J.T. MurQ etherase is required by Escherichia coli in order to metabolize anhydro-N-acetylmuramic acid obtained either from the environment or from its own cell wall. J. Bacteriol. 2006, 188:1660-1662.
-
(2006)
J. Bacteriol.
, vol.188
, pp. 1660-1662
-
-
Uehara, T.1
Suefuji, K.2
Jaeger, T.3
Mayer, C.4
Park, J.T.5
-
113
-
-
0037129827
-
Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes
-
research0034.0031-research0034.0011
-
Vandesompele J., De Preter K., Pattyn F., Poppe B., Van Roy N., De Paepe A., Speleman F. Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes. Genome Biol. 2002, 3. research0034.0031-research0034.0011.
-
(2002)
Genome Biol.
, vol.3
-
-
Vandesompele, J.1
De Preter, K.2
Pattyn, F.3
Poppe, B.4
Van Roy, N.5
De Paepe, A.6
Speleman, F.7
-
114
-
-
37449029960
-
Saccharomyces cerevisiae strains from traditional fermentations of Brazilian cachaça: trehalose metabolism, heat and ethanol resistance
-
Vianna C.R., Silva C.L., Neves M.J., Rosa C.A. Saccharomyces cerevisiae strains from traditional fermentations of Brazilian cachaça: trehalose metabolism, heat and ethanol resistance. Antonie Van Leeuwenhoek 2008, 93:205-217.
-
(2008)
Antonie Van Leeuwenhoek
, vol.93
, pp. 205-217
-
-
Vianna, C.R.1
Silva, C.L.2
Neves, M.J.3
Rosa, C.A.4
-
115
-
-
0035108399
-
Quantitation of the capacity of the secretion apparatus and requirement for PrsA in growth and secretion of alpha-amylase in Bacillus subtilis
-
Vitikainen M., Pummi T., Airaksinen U., Wahlström E., Wu H., Sarvas M., Kontinen V.P. Quantitation of the capacity of the secretion apparatus and requirement for PrsA in growth and secretion of alpha-amylase in Bacillus subtilis. J. Bacteriol. 2001, 183:1881-1890.
-
(2001)
J. Bacteriol.
, vol.183
, pp. 1881-1890
-
-
Vitikainen, M.1
Pummi, T.2
Airaksinen, U.3
Wahlström, E.4
Wu, H.5
Sarvas, M.6
Kontinen, V.P.7
-
116
-
-
0021353391
-
Effect of butanol on lipid composition and fluidity of Clostridium acetobutylicum ATCC 824
-
Vollherbst-Schneck K., Sands J.A., Montenecourt B.S. Effect of butanol on lipid composition and fluidity of Clostridium acetobutylicum ATCC 824. Appl. Environ. Microbiol. 1984, 47:193-194.
-
(1984)
Appl. Environ. Microbiol.
, vol.47
, pp. 193-194
-
-
Vollherbst-Schneck, K.1
Sands, J.A.2
Montenecourt, B.S.3
-
117
-
-
0037348510
-
The extracytoplasmic folding factor PrsA is required for protein secretion only in the presence of the cell wall in Bacillus subtilis
-
Wahlström E., Vitikainen M., Kontinen V.P., Sarvas M. The extracytoplasmic folding factor PrsA is required for protein secretion only in the presence of the cell wall in Bacillus subtilis. Microbiology 2003, 149:569-577.
-
(2003)
Microbiology
, vol.149
, pp. 569-577
-
-
Wahlström, E.1
Vitikainen, M.2
Kontinen, V.P.3
Sarvas, M.4
-
118
-
-
14044274269
-
Maintenance of ΔpH by a butanol-tolerant mutant of Clostridium beijerinckii
-
Wang F., Kashket S., Kashket E.R. Maintenance of ΔpH by a butanol-tolerant mutant of Clostridium beijerinckii. Microbiology 2005, 151:607-613.
-
(2005)
Microbiology
, vol.151
, pp. 607-613
-
-
Wang, F.1
Kashket, S.2
Kashket, E.R.3
-
119
-
-
80053375441
-
Single-nucleotide resolution analysis of the transcriptome structure of Clostridium beijerinckii NCIMB 8052 using RNA-Seq
-
Wang Y., Li X., Mao Y., Blaschek H.P. Single-nucleotide resolution analysis of the transcriptome structure of Clostridium beijerinckii NCIMB 8052 using RNA-Seq. BMC Genomics 2011, 12:479.
-
(2011)
BMC Genomics
, vol.12
, pp. 479
-
-
Wang, Y.1
Li, X.2
Mao, Y.3
Blaschek, H.P.4
-
120
-
-
40949089662
-
Teichoic acids and related cell-wall glycopolymers in gram-positive physiology and host interactions
-
Weidenmaier C., Peschel A. Teichoic acids and related cell-wall glycopolymers in gram-positive physiology and host interactions. Nat. Rev. Microbiol. 2008, 6:276-287.
-
(2008)
Nat. Rev. Microbiol.
, vol.6
, pp. 276-287
-
-
Weidenmaier, C.1
Peschel, A.2
-
121
-
-
0036319960
-
Design issues for cDNA microarray experiments
-
Yang Y.H., Speed T. Design issues for cDNA microarray experiments. Nat. Rev. Genet. 2002, 3:579-588.
-
(2002)
Nat. Rev. Genet.
, vol.3
, pp. 579-588
-
-
Yang, Y.H.1
Speed, T.2
-
122
-
-
0033594886
-
Bypassing the periplasm: reconstitution of the AcrAB multidrug efflux pump of Escherichia coli
-
Zgurskaya H.I., Nikaido H. Bypassing the periplasm: reconstitution of the AcrAB multidrug efflux pump of Escherichia coli. Proc. Natl. Acad. Sci U.S.A. 1999, 96:7190-7195.
-
(1999)
Proc. Natl. Acad. Sci U.S.A.
, vol.96
, pp. 7190-7195
-
-
Zgurskaya, H.I.1
Nikaido, H.2
-
123
-
-
39149115737
-
Membrane lipid homeostasis in bacteria
-
Zhang Y.M., Rock C.O. Membrane lipid homeostasis in bacteria. Nat. Rev. Microbiol. 2008, 6:222-233.
-
(2008)
Nat. Rev. Microbiol.
, vol.6
, pp. 222-233
-
-
Zhang, Y.M.1
Rock, C.O.2
-
124
-
-
67650576959
-
Functions of the Clostridium acetobutylicium FabF and FabZ proteins in unsaturated fatty acid biosynthesis
-
Zhu L., Cheng J. Luo B., Feng S., Lin J., Wang S., Cronan J.E., Wang H. Functions of the Clostridium acetobutylicium FabF and FabZ proteins in unsaturated fatty acid biosynthesis. BMC Micribiol. 2009, 9:119.
-
(2009)
BMC Micribiol.
, vol.9
, pp. 119
-
-
Zhu, L.1
Cheng, J.2
Luo, B.3
Feng, S.4
Lin, J.5
Wang, S.6
Cronan, J.E.7
Wang, H.8
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