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Volumn 12, Issue 1, 2012, Pages

Giant viruses coexisted with the cellular ancestors and represent a distinct supergroup along with superkingdoms Archaea, Bacteria and Eukarya

Author keywords

[No Author keywords available]

Indexed keywords

BIOSPHERE; COEXISTENCE; COMMON ANCESTRY; EUKARYOTE; EVOLUTIONARY BIOLOGY; GENE TRANSFER; GENOME; LIFESTYLE; PHYLOGENY; PROTEIN; VIRUS;

EID: 84865305042     PISSN: None     EISSN: 14712148     Source Type: Journal    
DOI: 10.1186/1471-2148-12-156     Document Type: Article
Times cited : (108)

References (71)
  • 3
    • 80054814749 scopus 로고    scopus 로고
    • Distant Mimivirus relative with a larger genome highlights the fundamental features of Megaviridae
    • 10.1073/pnas.1110889108 21987820
    • Distant Mimivirus relative with a larger genome highlights the fundamental features of Megaviridae. Arslan D, Legendre M, Seltzer V, Abergel C, Claverie JM, Proc Natl Acad Sci U S A 2011 108 42 17486 17491 10.1073/pnas.1110889108 21987820
    • (2011) Proc Natl Acad Sci U S A , vol.108 , Issue.42 , pp. 17486-17491
    • Arslan, D.1    Legendre, M.2    Seltzer, V.3    Abergel, C.4    Claverie, J.M.5
  • 4
    • 14744279787 scopus 로고    scopus 로고
    • Virology: Gulliver among the lilliputians
    • DOI 10.1016/j.cub.2005.02.042
    • Virology: Gulliver among the Lilliputians. Koonin EV, Curr Biol 2005 15 5 167 9 10.1016/j.cub.2005.02.042 15753027 (Pubitemid 40323518)
    • (2005) Current Biology , vol.15 , Issue.5
    • Koonin, E.V.1
  • 7
    • 33645061768 scopus 로고    scopus 로고
    • Mimivirus and the emerging concept of "giant" virus
    • 10.1016/j.virusres.2006.01.008 16469402
    • Mimivirus and the emerging concept of "giant" virus. Claverie JM, Ogata H, Audic S, Abergel C, Suhre K, Fournier PE, Virus Res 2006 117 1 133 144 10.1016/j.virusres.2006.01.008 16469402
    • (2006) Virus Res , vol.117 , Issue.1 , pp. 133-144
    • Claverie, J.M.1    Ogata, H.2    Audic, S.3    Abergel, C.4    Suhre, K.5    Fournier, P.E.6
  • 8
    • 79952196873 scopus 로고    scopus 로고
    • Breaking the 1000-gene barrier for Mimivirus using ultra-deep genome and transcriptome sequencing
    • 10.1186/1743-422X-8-99 21375749
    • Breaking the 1000-gene barrier for Mimivirus using ultra-deep genome and transcriptome sequencing. Legendre M, Santini S, Rico A, Abergel C, Claverie JM, Virol J 2011 8 99 10.1186/1743-422X-8-99 21375749
    • (2011) Virol J , vol.8 , pp. 99
    • Legendre, M.1    Santini, S.2    Rico, A.3    Abergel, C.4    Claverie, J.M.5
  • 9
    • 73349094390 scopus 로고    scopus 로고
    • Mimivirus and its virophage
    • 10.1146/annurev-genet-102108-134255 19653859
    • Mimivirus and its virophage. Claverie JM, Abergel C, Annu Rev Genet 2009 43 49 66 10.1146/annurev-genet-102108-134255 19653859
    • (2009) Annu Rev Genet , vol.43 , pp. 49-66
    • Claverie, J.M.1    Abergel, C.2
  • 10
    • 0035167322 scopus 로고    scopus 로고
    • Common origin of four diverse families of large eukaryotic DNA viruses
    • DOI 10.1128/JVI.75.23.11720-11734.2001
    • Common origin of four diverse families of large eukaryotic DNA viruses. Iyer LM, Aravind L, Koonin EV, J Virol 2001 75 23 11720 11734 10.1128/JVI.75.23.11720-11734.2001 11689653 (Pubitemid 33063263)
    • (2001) Journal of Virology , vol.75 , Issue.23 , pp. 11720-11734
    • Iyer, L.M.1    Aravind, L.2    Koonin, E.V.3
  • 11
    • 33645076499 scopus 로고    scopus 로고
    • Evolutionary genomics of nucleo-cytoplasmic large DNA viruses
    • 10.1016/j.virusres.2006.01.009 16494962
    • Evolutionary genomics of nucleo-cytoplasmic large DNA viruses. Iyer LM, Balaji S, Koonin EV, Aravind L, Virus Res 2006 117 1 156 184 10.1016/j.virusres.2006.01.009 16494962
    • (2006) Virus Res , vol.117 , Issue.1 , pp. 156-184
    • Iyer, L.M.1    Balaji, S.2    Koonin, E.V.3    Aravind, L.4
  • 12
    • 45149118680 scopus 로고    scopus 로고
    • Distinct DNA exit and packaging portals in the virus Acanthamoeba polyphaga mimivirus
    • DOI 10.1371/journal.pbio.0060114, e114
    • Distinct DNA exit and packaging portals in the virus Acanthamoeba polyphaga mimivirus. Zauberman N, Mutsafi Y, Halevy DB, Shimoni E, Klein E, Xiao C, Sun S, Minsky A, PLoS Biol 2008 6 5 114 10.1371/journal.pbio.0060114 18479185 (Pubitemid 351824745)
    • (2008) PLoS Biology , vol.6 , Issue.5 , pp. 1104-1114
    • Zauberman, N.1    Mutsafi, Y.2    Halevy, D.B.3    Shimoni, E.4    Klein, E.5    Xiao, C.6    Sun, S.7    Minsky, A.8
  • 14
    • 33645053240 scopus 로고    scopus 로고
    • The origin of viruses and their possible roles in major evolutionary transitions
    • 10.1016/j.virusres.2006.01.010 16476498
    • The origin of viruses and their possible roles in major evolutionary transitions. Forterre P, Virus Res 2006 117 1 5 16 10.1016/j.virusres.2006.01. 010 16476498
    • (2006) Virus Res , vol.117 , Issue.1 , pp. 5-16
    • Forterre, P.1
  • 15
    • 40949150683 scopus 로고    scopus 로고
    • Redefining viruses: Lessons from Mimivirus
    • DOI 10.1038/nrmicro1858, PII NRMICRO1858
    • Redefining viruses: lessons from Mimivirus. Raoult D, Forterre P, Nat Rev Microbiol 2008 6 4 315 319 10.1038/nrmicro1858 18311164 (Pubitemid 351404775)
    • (2008) Nature Reviews Microbiology , vol.6 , Issue.4 , pp. 315-319
    • Raoult, D.1    Forterre, P.2
  • 16
    • 33947593126 scopus 로고    scopus 로고
    • The ancient virus world and evolution of cells
    • DOI 10.1186/1745-6150-1-29
    • The ancient Virus World and evolution of cells. Koonin EV, Senkevich TG, Dolja VV, Biol Direct 2006 1 29 10.1186/1745-6150-1-29 16984643 (Pubitemid 46730971)
    • (2006) Biology Direct , vol.1 , pp. 29
    • Koonin, E.V.1    Senkevich, T.G.2    Dolja, V.V.3
  • 17
    • 49649094272 scopus 로고    scopus 로고
    • 'Virophage' suggests viruses are alive
    • 10.1038/454677a 18685665
    • 'Virophage' suggests viruses are alive. Pearson H, Nature 2008 454 7205 677 10.1038/454677a 18685665
    • (2008) Nature , vol.454 , Issue.7205 , pp. 677
    • Pearson, H.1
  • 18
    • 63249112982 scopus 로고    scopus 로고
    • Ten reasons to exclude viruses from the tree of life
    • 19270719
    • Ten reasons to exclude viruses from the tree of life. Moreira D, Lopez-Garcia P, Nat Rev Microbiol 2009 7 4 306 311 19270719
    • (2009) Nat Rev Microbiol , vol.7 , Issue.4 , pp. 306-311
    • Moreira, D.1    Lopez-Garcia, P.2
  • 19
    • 67651229210 scopus 로고    scopus 로고
    • Ten good reasons not to exclude giruses from the evolutionary picture
    • author reply 615 19561628
    • Ten good reasons not to exclude giruses from the evolutionary picture. Claverie JM, Ogata H, Nat Rev Microbiol 2009 7 8 615 author reply 615 19561628
    • (2009) Nat Rev Microbiol , vol.7 , Issue.8 , pp. 615
    • Claverie, J.M.1    Ogata, H.2
  • 20
    • 67651215710 scopus 로고    scopus 로고
    • Viral genomes are part of the phylogenetic tree of life
    • author reply 615 19561628
    • Viral genomes are part of the phylogenetic tree of life. Ludmir EB, Enquist LW, Nat Rev Microbiol 2009 7 8 615 author reply 615 19561628
    • (2009) Nat Rev Microbiol , vol.7 , Issue.8 , pp. 615
    • Ludmir, E.B.1    Enquist, L.W.2
  • 21
    • 40349112971 scopus 로고    scopus 로고
    • Giant viruses, giant chimeras: The multiple evolutionary histories of Mimivirus genes
    • DOI 10.1186/1471-2148-8-12
    • Giant viruses, giant chimeras: the multiple evolutionary histories of Mimivirus genes. Moreira D, Brochier-Armanet C, BMC Evol Biol 2008 8 12 10.1186/1471-2148-8-12 18205905 (Pubitemid 351342674)
    • (2008) BMC Evolutionary Biology , vol.8 , Issue.1 , pp. 12
    • Moreira, D.1    Brochier-Armanet, C.2
  • 23
    • 59849127275 scopus 로고    scopus 로고
    • The origin, evolution and structure of the protein world
    • 10.1042/BJ20082063 19133840
    • The origin, evolution and structure of the protein world. Caetano-Anolles G, Wang M, Caetano-Anolles D, Mittenthal JE, Biochem J 2009 417 3 621 637 10.1042/BJ20082063 19133840
    • (2009) Biochem J , vol.417 , Issue.3 , pp. 621-637
    • Caetano-Anolles, G.1    Wang, M.2    Caetano-Anolles, D.3    Mittenthal, J.E.4
  • 24
    • 77952263209 scopus 로고    scopus 로고
    • Modularity and dissipation in the evolution of molecular function, structures and networks
    • Wiley-Blackwell, New Jersey Caetano-Anollés G, Hoboken C-AG
    • Modularity and dissipation in the evolution of molecular function, structures and networks. Caetano-Anolles G, Yafremava L, Mittenthal JM, Evolutionary bioinformatics and systems biology Wiley-Blackwell, New Jersey, Caetano-Anollés G, Hoboken C-AG, 2010 431 450
    • (2010) Evolutionary Bioinformatics and Systems Biology , pp. 431-450
    • Caetano-Anolles, G.1    Yafremava, L.2    Mittenthal, J.M.3
  • 25
    • 0028961335 scopus 로고
    • SCOP: A structural classification of proteins database for the investigation of sequences and structures
    • 7723011
    • SCOP: a structural classification of proteins database for the investigation of sequences and structures. Murzin AG, Brenner SE, Hubbard T, Chothia C, J Mol Biol 1995 247 4 536 540 7723011
    • (1995) J Mol Biol , vol.247 , Issue.4 , pp. 536-540
    • Murzin, A.G.1    Brenner, S.E.2    Hubbard, T.3    Chothia, C.4
  • 27
    • 84055190820 scopus 로고    scopus 로고
    • Annotation of Protein Domains Reveals Remarkable Conservation in the Functional Makeup of Proteomes Across Superkingdoms
    • 10.3390/genes2040869
    • Annotation of Protein Domains Reveals Remarkable Conservation in the Functional Makeup of Proteomes Across Superkingdoms. Nasir A, Naeem A, Khan MJ, Lopez-Nicora HD, Caetano-Anolles G, Genes 2011 2 869 10.3390/genes2040869
    • (2011) Genes , vol.2 , pp. 869
    • Nasir, A.1    Naeem, A.2    Khan, M.J.3    Lopez-Nicora, H.D.4    Caetano-Anolles, G.5
  • 28
    • 35948990789 scopus 로고    scopus 로고
    • Reductive evolution of architectural repertoires in proteomes and the birth of the tripartite world
    • DOI 10.1101/gr.6454307
    • Reductive evolution of architectural repertoires in proteomes and the birth of the tripartite world. Wang M, Yafremava LS, Caetano-Anolles D, Mittenthal JE, Caetano-Anolles G, Genome Res 2007 17 11 1572 1585 10.1101/gr.6454307 17908824 (Pubitemid 350074853)
    • (2007) Genome Research , vol.17 , Issue.11 , pp. 1572-1585
    • Wang, M.1    Yafremava, L.S.2    Caetano-Anolles, D.3    Mittenthal, J.E.4    Caetano-Anolles, G.5
  • 29
    • 80053304045 scopus 로고    scopus 로고
    • The proteomic complexity and rise of the primordial ancestor of diversified life
    • The proteomic complexity and rise of the primordial ancestor of diversified life. Kim KM, Caetano-Anolles G, BMC Evol Biol 2011 11 140-2148-11-140
    • (2011) BMC Evol Biol , vol.11 , pp. 1402148-311140
    • Kim, K.M.1    Caetano-Anolles, G.2
  • 30
    • 84862830777 scopus 로고    scopus 로고
    • The evolutionary history of protein fold families and proteomes confirms that the archaeal ancestor is more ancient than the ancestors of other superkingdoms
    • 10.1186/1471-2148-12-13 22284070
    • The evolutionary history of protein fold families and proteomes confirms that the archaeal ancestor is more ancient than the ancestors of other superkingdoms. Kim KM, Caetano-Anolles G, BMC Evol Biol 2012 12 13 10.1186/1471-2148-12-13 22284070
    • (2012) BMC Evol Biol , vol.12 , pp. 13
    • Kim, K.M.1    Caetano-Anolles, G.2
  • 31
    • 17544367678 scopus 로고    scopus 로고
    • Convergent evolution of domain architectures (is rare)
    • DOI 10.1093/bioinformatics/bti204
    • Convergent evolution of domain architectures (is rare). Gough J, Bioinformatics 2005 21 8 1464 1471 10.1093/bioinformatics/bti204 15585523 (Pubitemid 40552751)
    • (2005) Bioinformatics , vol.21 , Issue.8 , pp. 1464-1471
    • Gough, J.1
  • 32
  • 34
    • 77949513721 scopus 로고    scopus 로고
    • The evolutionary history of protein domains viewed by species phylogeny
    • 10.1371/journal.pone.0008378 20041107
    • The evolutionary history of protein domains viewed by species phylogeny. Yang S, Bourne PE, PLoS One 2009 4 12 8378 10.1371/journal.pone.0008378 20041107
    • (2009) PLoS One , vol.4 , Issue.12 , pp. 58378
    • Yang, S.1    Bourne, P.E.2
  • 35
    • 12044251313 scopus 로고
    • Missing Data versus Missing Characters in Phylogenetic Analysis
    • Missing data versus missing characters in phylogenetic analysis. Maddison WP, Syst Biol 1993 42 576 10.1093/sysbio/42.4.576 (Pubitemid 24759834)
    • (1993) Systematic Biology , vol.42 , Issue.4 , pp. 576
    • Maddison, W.P.1
  • 36
    • 17444363410 scopus 로고    scopus 로고
    • Parsimony and the problem of inapplicables in sequence data
    • Oxford University Press, Oxford Albert VA
    • Parsimony and the problem of inapplicables in sequence data. De Laet J, Parsimony, phylogeny and genomics Oxford University Press, Oxford, Albert VA, 2005 81
    • (2005) Parsimony, Phylogeny and Genomics , pp. 81
    • De Laet, J.1
  • 37
    • 0033139150 scopus 로고    scopus 로고
    • Effect of nonindependent substitution on phylogenetic accuracy
    • Effect of nonindependent substitution on phylogenetic accuracy. Huelsenbeck JP, Nielsen R, Syst Biol 1999 48 2 317 328 10.1080/106351599260319 12066710 (Pubitemid 129493669)
    • (1999) Systematic Biology , vol.48 , Issue.2 , pp. 317-328
    • Huelsenbeck, J.P.1    Nielsen, R.2
  • 38
    • 79961054837 scopus 로고    scopus 로고
    • Reductive evolution of proteomes and protein structures
    • 10.1073/pnas.1017361108 21730144
    • Reductive evolution of proteomes and protein structures. Wang M, Kurland CG, Caetano-Anolles G, Proc Natl Acad Sci U S A 2011 108 29 11954 11958 10.1073/pnas.1017361108 21730144
    • (2011) Proc Natl Acad Sci U S A , vol.108 , Issue.29 , pp. 11954-11958
    • Wang, M.1    Kurland, C.G.2    Caetano-Anolles, G.3
  • 39
    • 78650476811 scopus 로고    scopus 로고
    • A universal molecular clock of protein folds and its power in tracing the early history of aerobic metabolism and planet oxygenation
    • 10.1093/molbev/msq232 20805191
    • A universal molecular clock of protein folds and its power in tracing the early history of aerobic metabolism and planet oxygenation. Wang M, Jiang YY, Kim KM, Qu G, Ji HF, Mittenthal JE, Zhang HY, Caetano-Anolles G, Mol Biol Evol 2011 28 1 567 582 10.1093/molbev/msq232 20805191
    • (2011) Mol Biol Evol , vol.28 , Issue.1 , pp. 567-582
    • Wang, M.1    Jiang, Y.Y.2    Kim, K.M.3    Qu, G.4    Ji, H.F.5    Mittenthal, J.E.6    Zhang, H.Y.7    Caetano-Anolles, G.8
  • 40
    • 84858040413 scopus 로고    scopus 로고
    • Ribosomal history reveals origins of modern protein synthesis
    • 10.1371/journal.pone.0032776 22427882
    • Ribosomal history reveals origins of modern protein synthesis. Harish A, Caetano-Anolles G, PLoS One 2012 7 3 32776 10.1371/journal.pone.0032776 22427882
    • (2012) PLoS One , vol.7 , Issue.3 , pp. 532776
    • Harish, A.1    Caetano-Anolles, G.2
  • 41
    • 79951672423 scopus 로고    scopus 로고
    • Proteome evolution and the metabolic origins of translation and cellular life
    • 10.1007/s00239-010-9400-9 21082171
    • Proteome evolution and the metabolic origins of translation and cellular life. Caetano-Anolles D, Kim KM, Mittenthal JE, Caetano-Anolles G, J Mol Evol 2011 72 1 14 33 10.1007/s00239-010-9400-9 21082171
    • (2011) J Mol Evol , vol.72 , Issue.1 , pp. 14-33
    • Caetano-Anolles, D.1    Kim, K.M.2    Mittenthal, J.E.3    Caetano-Anolles, G.4
  • 43
    • 0038486929 scopus 로고    scopus 로고
    • An evolutionarily structural universe of protein architecture
    • DOI 10.1101/gr.1161903
    • An evolutionarily structured universe of protein architecture. Caetano-Anolles G, Caetano-Anolles D, Genome Res 2003 13 7 1563 1571 10.1101/gr.1161903 12840035 (Pubitemid 36874472)
    • (2003) Genome Research , vol.13 , Issue.7 , pp. 1563-1571
    • Caetano-Anolles, G.1    Caetano-Anolles, D.2
  • 44
    • 0036182064 scopus 로고    scopus 로고
    • Evolved RNA secondary structure and the rooting of the universal tree of life
    • Evolved RNA secondary structure and the rooting of the universal tree of life. Caetano-Anolles G, J Mol Evol 2002 54 3 333 345 11847559 (Pubitemid 34165418)
    • (2002) Journal of Molecular Evolution , vol.54 , Issue.3 , pp. 333-345
    • Caetano-Anolles, G.1
  • 45
    • 38649093627 scopus 로고    scopus 로고
    • The origin and evolution of tRNA inferred from phylogenetic analysis of structure
    • 10.1007/s00239-007-9050-8 18058157
    • The origin and evolution of tRNA inferred from phylogenetic analysis of structure. Sun FJ, Caetano-Anolles G, J Mol Evol 2008 66 21 10.1007/s00239-007- 9050-8 18058157
    • (2008) J Mol Evol , vol.66 , pp. 21
    • Sun, F.J.1    Caetano-Anolles, G.2
  • 46
    • 58149196295 scopus 로고    scopus 로고
    • The evolutionary mechanics of domain organization in proteomes and the rise of modularity in the protein world
    • 10.1016/j.str.2008.11.008 19141283
    • The evolutionary mechanics of domain organization in proteomes and the rise of modularity in the protein world. Wang M, Caetano-Anolles G, Structure 2009 17 1 66 78 10.1016/j.str.2008.11.008 19141283
    • (2009) Structure , vol.17 , Issue.1 , pp. 66-78
    • Wang, M.1    Caetano-Anolles, G.2
  • 47
    • 79960471404 scopus 로고    scopus 로고
    • Are viruses a source of new protein folds for organisms? - Virosphere structure space and evolution
    • 10.1002/bies.201000126 21633962
    • Are viruses a source of new protein folds for organisms?-Virosphere structure space and evolution. Abroi A, Gough J, Bioessays 2011 33 8 626 635 10.1002/bies.201000126 21633962
    • (2011) Bioessays , vol.33 , Issue.8 , pp. 626-635
    • Abroi, A.1    Gough, J.2
  • 48
    • 0036087169 scopus 로고    scopus 로고
    • SUPERFAMILY: HMMs representing all proteins of known structure. SCOP sequence searches, alignments and genome assignments
    • SUPERFAMILY: HMMs representing all proteins of known structure. SCOP sequence searches, alignments and genome assignments. Gough J, Chothia C, Nucleic Acids Res 2002 30 1 268 272 10.1093/nar/30.1.268 11752312 (Pubitemid 34679561)
    • (2002) Nucleic Acids Research , vol.30 , Issue.1 , pp. 268-272
    • Gough, J.1    Chothia, C.2
  • 49
    • 58149203228 scopus 로고    scopus 로고
    • SUPERFAMILY - Sophisticated comparative genomics, data mining, visualization and phylogeny
    • 19036790
    • SUPERFAMILY - sophisticated comparative genomics, data mining, visualization and phylogeny. Wilson D, Pethica R, Zhou Y, Talbot C, Vogel C, Madera M, Chothia C, Gough J, Nucleic Acids Res 2009 37 Database issue 380-6 19036790
    • (2009) Nucleic Acids Res , vol.37 , Issue.DATABASE ISSUE , pp. 4380-4386
    • Wilson, D.1    Pethica, R.2    Zhou, Y.3    Talbot, C.4    Vogel, C.5    Madera, M.6    Chothia, C.7    Gough, J.8
  • 50
    • 0035798406 scopus 로고    scopus 로고
    • Assignment of homology to genome sequences using a library of hidden Markov models that represent all proteins of known structure
    • DOI 10.1006/jmbi.2001.5080
    • Assignment of homology to genome sequences using a library of hidden Markov models that represent all proteins of known structure. Gough J, Karplus K, Hughey R, Chothia C, J Mol Biol 2001 313 4 903 919 10.1006/jmbi.2001.5080 11697912 (Pubitemid 33063435)
    • (2001) Journal of Molecular Biology , vol.313 , Issue.4 , pp. 903-919
    • Gough, J.1    Karplus, K.2    Hughey, R.3    Chothia, C.4
  • 51
    • 33750951499 scopus 로고    scopus 로고
    • Global phylogeny determined by the combination of protein domains in proteomes
    • DOI 10.1093/molbev/msl117
    • Global phylogeny determined by the combination of protein domains in proteomes. Wang M, Caetano-Anolles G, Mol Biol Evol 2006 23 12 2444 2454 10.1093/molbev/msl117 16971695 (Pubitemid 44737138)
    • (2006) Molecular Biology and Evolution , vol.23 , Issue.12 , pp. 2444-2454
    • Wang, M.1    Caetano-Anolles, G.2
  • 54
    • 7244221755 scopus 로고    scopus 로고
    • Performance of maximum parsimony and likelihood phylogenetics when evolution is heterogenous
    • DOI 10.1038/nature02917
    • Performance of maximum parsimony and likelihood phylogenetics when evolution is heterogeneous. Kolaczkowski B, Thornton JW, Nature 2004 431 7011 980 984 10.1038/nature02917 15496922 (Pubitemid 39434418)
    • (2004) Nature , vol.431 , Issue.7011 , pp. 980-984
    • Kolaczkowski, B.1    Thomton, J.W.2
  • 55
    • 0000569073 scopus 로고
    • The retention index and homoplasy excess
    • 10.2307/2992406
    • The retention index and homoplasy excess. Farris JS, Syst Zool 1989 38 4 406 10.2307/2992406
    • (1989) Syst Zool , vol.38 , Issue.4 , pp. 406
    • Farris, J.S.1
  • 56
    • 38649092410 scopus 로고    scopus 로고
    • Dendroscope: An interactive viewer for large phylogenetic trees
    • DOI 10.1186/1471-2105-8-460
    • Dendroscope: An interactive viewer for large phylogenetic trees. Huson DH, Richter DC, Rausch C, Dezulian T, Franz M, Rupp R, BMC Bioinforma 2007 8 460 10.1186/1471-2105-8-460 (Pubitemid 351168201)
    • (2007) BMC Bioinformatics , vol.8 , pp. 460
    • Huson, D.H.1    Richter, D.C.2    Rausch, C.3    Dezulian, T.4    Franz, M.5    Rupp, R.6
  • 57
    • 1542347067 scopus 로고    scopus 로고
    • Neighbor-Net: An Agglomerative Method for the Construction of Phylogenetic Networks
    • DOI 10.1093/molbev/msh018
    • Neighbor-net: an agglomerative method for the construction of phylogenetic networks. Bryant D, Moulton V, Mol Biol Evol 2004 21 2 255 265 14660700 (Pubitemid 38314614)
    • (2004) Molecular Biology and Evolution , vol.21 , Issue.2 , pp. 255-265
    • Bryant, D.1    Moulton, V.2
  • 58
    • 0031678692 scopus 로고    scopus 로고
    • SplitsTree: Analyzing and visualizing evolutionary data
    • SplitsTree: analyzing and visualizing evolutionary data. Huson DH, Bioinformatics 1998 14 1 68 73 10.1093/bioinformatics/14.1.68 9520503 (Pubitemid 28397727)
    • (1998) Bioinformatics , vol.14 , Issue.1 , pp. 68-73
    • Huson, D.H.1
  • 59
    • 12344261833 scopus 로고    scopus 로고
    • The relationship between domain duplication and recombination
    • DOI 10.1016/j.jmb.2004.11.050, PII S0022283604015098
    • The relationship between domain duplication and recombination. Vogel C, Teichmann SA, Pereira-Leal J, J Mol Biol 2005 346 1 355 365 10.1016/j.jmb.2004. 11.050 15663950 (Pubitemid 40128326)
    • (2005) Journal of Molecular Biology , vol.346 , Issue.1 , pp. 355-365
    • Vogel, C.1    Teichmann, S.A.2    Pereira-Leal, J.3
  • 60
    • 0842268045 scopus 로고    scopus 로고
    • Supra-domains: Evolutionary Units Larger than Single Protein Domains
    • DOI 10.1016/j.jmb.2003.12.026
    • Supra-domains: evolutionary units larger than single protein domains. Vogel C, Berzuini C, Bashton M, Gough J, Teichmann SA, J Mol Biol 2004 336 3 809 823 10.1016/j.jmb.2003.12.026 15095989 (Pubitemid 38183030)
    • (2004) Journal of Molecular Biology , vol.336 , Issue.3 , pp. 809-823
    • Vogel, C.1    Berzuini, C.2    Bashton, M.3    Gough, J.4    Teichmann, S.A.5
  • 61
    • 33646909100 scopus 로고    scopus 로고
    • Protein family expansions and biological complexity
    • DOI 10.1371/journal.pcbi.0020048
    • Protein family expansions and biological complexity. Vogel C, Chothia C, PLoS Comput Biol 2006 2 5 48 10.1371/journal.pcbi.0020048 16733546 (Pubitemid 43794331)
    • (2006) PLoS Computational Biology , vol.2 , Issue.5 , pp. 370-382
    • Vogel, C.1    Chothia, C.2
  • 64
    • 77956095201 scopus 로고    scopus 로고
    • New functions of aminoacyl-tRNA synthetases beyond translation
    • New functions of aminoacyl-tRNA synthetases beyond translation. Guo M, Yang X-L, Schimmel P, Nature Rev 2010 11 668 674
    • (2010) Nature Rev , vol.11 , pp. 668-674
    • Guo, M.1    Yang, X.-L.2    Schimmel, P.3
  • 65
    • 0025158208 scopus 로고
    • Partition of tRNA synthetases into two classes based on mutually exclusive sets of sequence motifs
    • DOI 10.1038/347203a0
    • Partition of tRNA synthetases into two classes based on mutually exclusive sets of sequence motifs. Eriani G, Delarue M, Poch O, Gangloff J, Moras D, Nature 1990 347 6289 203 206 10.1038/347203a0 2203971 (Pubitemid 20315884)
    • (1990) Nature , vol.347 , Issue.6289 , pp. 203-206
    • Eriani, G.1    Delarue, M.2    Poch, O.3    Gangloff, J.4    Moras, D.5
  • 66
    • 0346848759 scopus 로고    scopus 로고
    • Evolution of Structure in Aminoacyl-tRNA Synthetases
    • DOI 10.1128/MMBR.67.4.550-573.2003
    • On the evolution of structure in aminoacyl-tRNA synthetases. O'Donoghue P, Luthey-Schulten Z, Microbiol Mol Biol Rev 2003 67 4 550 573 10.1128/MMBR.67.4.550-573.2003 14665676 (Pubitemid 37549770)
    • (2003) Microbiology and Molecular Biology Reviews , vol.67 , Issue.4 , pp. 550-573
    • O'Donoghue, P.1    Luthey-Schulten, Z.2
  • 67
    • 77953753370 scopus 로고    scopus 로고
    • Emergence and evolution of modern molecular functions inferred from phylogenomic analysis of ontological data
    • 10.1093/molbev/msq106 20418223
    • Emergence and evolution of modern molecular functions inferred from phylogenomic analysis of ontological data. Kim KM, Caetano-Anolles G, Mol Biol Evol 2010 27 7 1710 1733 10.1093/molbev/msq106 20418223
    • (2010) Mol Biol Evol , vol.27 , Issue.7 , pp. 1710-1733
    • Kim, K.M.1    Caetano-Anolles, G.2
  • 69
    • 77956761906 scopus 로고    scopus 로고
    • Mimivirus: The emerging paradox of quasi-autonomous viruses
    • 10.1016/j.tig.2010.07.003 20696492
    • Mimivirus: the emerging paradox of quasi-autonomous viruses. Claverie JM, Abergel C, Trends Genet 2010 26 10 431 437 10.1016/j.tig.2010.07.003 20696492
    • (2010) Trends Genet , vol.26 , Issue.10 , pp. 431-437
    • Claverie, J.M.1    Abergel, C.2
  • 70
    • 35949003882 scopus 로고    scopus 로고
    • Virus-encoded aminoacyl-tRNA synthetases: Structural and functional characterization of mimivirus TyrRS and MetRS
    • DOI 10.1128/JVI.01107-07
    • Virus-encoded aminoacyl-tRNA synthetases: structural and functional characterization of mimivirus TyrRS and MetRS. Abergel C, Rudinger-Thirion J, Giege R, Claverie JM, J Virol 2007 81 22 12406 12417 10.1128/JVI.01107-07 17855524 (Pubitemid 350085854)
    • (2007) Journal of Virology , vol.81 , Issue.22 , pp. 12406-12417
    • Abergel, C.1    Rudinger-Thirion, J.2    Giege, R.3    Claverie, J.-M.4
  • 71
    • 84859505162 scopus 로고    scopus 로고
    • Coordination of tRNA synthetase active sites for chemical fidelity
    • 10.1074/jbc.C111.325795 22334703
    • Coordination of tRNA synthetase active sites for chemical fidelity. Boniecki MT, Martinis SA, J Biol Chem 2012 287 11285 11289 10.1074/jbc.C111. 325795 22334703
    • (2012) J Biol Chem , vol.287 , pp. 11285-11289
    • Boniecki, M.T.1    Martinis, S.A.2


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