-
1
-
-
0016345760
-
Chemical and biological evolution of nucleotide-binding protein
-
M.G. Rossmann, D. Moras, and K.W. Olsen Chemical and biological evolution of nucleotide-binding protein Nature 250 1974 194 199
-
(1974)
Nature
, vol.250
, pp. 194-199
-
-
Rossmann, M.G.1
Moras, D.2
Olsen, K.W.3
-
2
-
-
0028961335
-
SCOP: A structural classification of proteins database for the investigation of sequences and structures
-
A.G. Murzin, S.E. Brenner, T. Hubbard, and C. Chothia SCOP: a structural classification of proteins database for the investigation of sequences and structures J. Mol. Biol. 247 1995 536 540
-
(1995)
J. Mol. Biol.
, vol.247
, pp. 536-540
-
-
Murzin, A.G.1
Brenner, S.E.2
Hubbard, T.3
Chothia, C.4
-
3
-
-
0346494941
-
SCOP database in 2004: Refinements integrate structure and sequence family data
-
A. Andreeva, D. Howorth, S.E. Brenner, T.J. Hubbard, C. Chothia, and A.G. Murzin SCOP database in 2004: refinements integrate structure and sequence family data Nucl. Acids. Res. 32 2004 D226 D229
-
(2004)
Nucl. Acids. Res.
, vol.32
-
-
Andreeva, A.1
Howorth, D.2
Brenner, S.E.3
Hubbard, T.J.4
Chothia, C.5
Murzin, A.G.6
-
4
-
-
0029006062
-
The multiplicity of domains in proteins
-
R.F. Doolittle The multiplicity of domains in proteins Annu. Rev. Biochem. 64 1995 287 314
-
(1995)
Annu. Rev. Biochem.
, vol.64
, pp. 287-314
-
-
Doolittle, R.F.1
-
5
-
-
0035816218
-
Domain combinations in archaeal, eubacterial and eukaryotic proteomes
-
G. Apic, J. Gough, and S.A. Teichmann Domain combinations in archaeal, eubacterial and eukaryotic proteomes J. Mol. Biol. 310 2001 311 325
-
(2001)
J. Mol. Biol.
, vol.310
, pp. 311-325
-
-
Apic, G.1
Gough, J.2
Teichmann, S.A.3
-
6
-
-
0034887573
-
Scale-free behavior in protein domain networks
-
S. Wuchty Scale-free behavior in protein domain networks Mol. Biol. Evol. 18 2001 1694 1702
-
(2001)
Mol. Biol. Evol.
, vol.18
, pp. 1694-1702
-
-
Wuchty, S.1
-
7
-
-
0038306145
-
Modular assembly of genes and the evolution of new functions
-
L. Patthy Modular assembly of genes and the evolution of new functions Genetica 118 2003 217 231
-
(2003)
Genetica
, vol.118
, pp. 217-231
-
-
Patthy, L.1
-
9
-
-
0032509179
-
Comparison of the complete protein sets of worm and yeast: Orthology and divergence
-
S.A. Chervitz, L. Aravind, G. Sherlock, C.A. Ball, E.V. Koonin, and S.S. Dwight Comparison of the complete protein sets of worm and yeast: orthology and divergence Science 282 1998 2022 2028
-
(1998)
Science
, vol.282
, pp. 2022-2028
-
-
Chervitz, S.A.1
Aravind, L.2
Sherlock, G.3
Ball, C.A.4
Koonin, E.V.5
Dwight, S.S.6
-
10
-
-
0034708444
-
Comparative genomics of the eukaryotes
-
G.M. Rubin, M.D. Yandell, J.R. Wortman, G.L. Gabor Miklos, C.R. Nelson, and I.K. Hariharan Comparative genomics of the eukaryotes Science 287 2000 2204 2215
-
(2000)
Science
, vol.287
, pp. 2204-2215
-
-
Rubin, G.M.1
Yandell, M.D.2
Wortman, J.R.3
Gabor Miklos, G.L.4
Nelson, C.R.5
Hariharan, I.K.6
-
11
-
-
0032804892
-
Origin of multicellular eukaryotes - Insights from proteome comparisons
-
L. Aravind, and G. Subramanian Origin of multicellular eukaryotes - insights from proteome comparisons Curr. Opin. Genet. Dev. 9 1999 688 694
-
(1999)
Curr. Opin. Genet. Dev.
, vol.9
, pp. 688-694
-
-
Aravind, L.1
Subramanian, G.2
-
12
-
-
0036066765
-
The role of lineage-specific gene family expansion in the evolution of eukaryotes
-
O. Lespinet, Y.I. Wolf, E.V. Koonin, and L. Aravind The role of lineage-specific gene family expansion in the evolution of eukaryotes Genome Res. 12 2002 1048 1059
-
(2002)
Genome Res.
, vol.12
, pp. 1048-1059
-
-
Lespinet, O.1
Wolf, Y.I.2
Koonin, E.V.3
Aravind, L.4
-
14
-
-
0347519175
-
The immunoglobulin superfamily in Drosophila melanogaster and Caenorhabditis elegans and the evolution of complexity
-
C. Vogel, S.A. Teichmann, and C. Chothia The immunoglobulin superfamily in Drosophila melanogaster and Caenorhabditis elegans and the evolution of complexity Development 130 2003 6317 6328
-
(2003)
Development
, vol.130
, pp. 6317-6328
-
-
Vogel, C.1
Teichmann, S.A.2
Chothia, C.3
-
15
-
-
0036853192
-
Structural characterization of the human proteome
-
A. Muller, R.M. MacCallum, and M.J. Sternberg Structural characterization of the human proteome Genome Res. 12 2002 1625 1641
-
(2002)
Genome Res.
, vol.12
, pp. 1625-1641
-
-
Muller, A.1
MacCallum, R.M.2
Sternberg, M.J.3
-
16
-
-
2042437650
-
Initial sequencing and analysis of the human genome
-
E.S. Lander, L.M. Linton, B. Birren, C. Nusbaum, M.C. Zody, and J. Baldwin Initial sequencing and analysis of the human genome Nature 409 2001 860 921
-
(2001)
Nature
, vol.409
, pp. 860-921
-
-
Lander, E.S.1
Linton, L.M.2
Birren, B.3
Nusbaum, C.4
Zody, M.C.5
Baldwin, J.6
-
17
-
-
0032424307
-
Structural assignments to the Mycoplasma genitalium proteins show extensive gene duplications and domain rearrangements
-
S.A. Teichmann, J. Park, and C. Chothia Structural assignments to the Mycoplasma genitalium proteins show extensive gene duplications and domain rearrangements Proc. Natl Acad. Sci. USA 95 1998 14658 14663
-
(1998)
Proc. Natl Acad. Sci. USA
, vol.95
, pp. 14658-14663
-
-
Teichmann, S.A.1
Park, J.2
Chothia, C.3
-
18
-
-
0035815113
-
Evolution of function in protein superfamilies, from a structural perspective
-
A.E. Todd, C.A. Orengo, and J.M. Thornton Evolution of function in protein superfamilies, from a structural perspective J. Mol. Biol. 307 2001 1113 1143
-
(2001)
J. Mol. Biol.
, vol.307
, pp. 1113-1143
-
-
Todd, A.E.1
Orengo, C.A.2
Thornton, J.M.3
-
19
-
-
1542286754
-
Comparative analysis of protein domain organization
-
Y. Ye, and A. Godzik Comparative analysis of protein domain organization Genome Res. 14 2004 343 353
-
(2004)
Genome Res.
, vol.14
, pp. 343-353
-
-
Ye, Y.1
Godzik, A.2
-
20
-
-
0242323637
-
Multi-domain protein families and domain pairs: Comparison with known structures and a random model of domain recombination
-
G. Apic, W. Huber, and S.A. Teichmann Multi-domain protein families and domain pairs: comparison with known structures and a random model of domain recombination J. Struct. Funct. Genome 4 2003 67 78
-
(2003)
J. Struct. Funct. Genome
, vol.4
, pp. 67-78
-
-
Apic, G.1
Huber, W.2
Teichmann, S.A.3
-
21
-
-
0037079014
-
The structure of the protein universe and genome evolution
-
E.V. Koonin, Y.I. Wolf, and G.P. Karev The structure of the protein universe and genome evolution Nature 420 2002 218 223
-
(2002)
Nature
, vol.420
, pp. 218-223
-
-
Koonin, E.V.1
Wolf, Y.I.2
Karev, G.P.3
-
22
-
-
0038483826
-
Emergence of scaling in random networks
-
A.L. Barabasi, and R. Albert Emergence of scaling in random networks Science 286 1999 509 512
-
(1999)
Science
, vol.286
, pp. 509-512
-
-
Barabasi, A.L.1
Albert, R.2
-
23
-
-
0035798398
-
Protein family and fold occurrence in genomes: Power-law behaviour and evolutionary model
-
J. Qian, N.M. Luscombe, and M. Gerstein Protein family and fold occurrence in genomes: power-law behaviour and evolutionary model J. Mol. Biol. 313 2001 673 681
-
(2001)
J. Mol. Biol.
, vol.313
, pp. 673-681
-
-
Qian, J.1
Luscombe, N.M.2
Gerstein, M.3
-
25
-
-
0034625235
-
The impact of comparative genomics on our understanding of evolution
-
E.V. Koonin, L. Aravind, and A.S. Kondrashov The impact of comparative genomics on our understanding of evolution Cell 101 2000 573 576
-
(2000)
Cell
, vol.101
, pp. 573-576
-
-
Koonin, E.V.1
Aravind, L.2
Kondrashov, A.S.3
-
26
-
-
0032411225
-
How representative are the known structures of the proteins in a complete genome? a comprehensive structural census
-
M. Gerstein How representative are the known structures of the proteins in a complete genome? A comprehensive structural census Fold. Des. 3 1998 497 512
-
(1998)
Fold. Des.
, vol.3
, pp. 497-512
-
-
Gerstein, M.1
-
27
-
-
1542563409
-
Initial sequencing and comparative analysis of the mouse genome
-
R.H. Waterston, K. Lindblad-Toh, E. Birney, J. Rogers, J.F. Abril, and P. Agarwal Initial sequencing and comparative analysis of the mouse genome Nature 420 2002 520 562
-
(2002)
Nature
, vol.420
, pp. 520-562
-
-
Waterston, R.H.1
Lindblad-Toh, K.2
Birney, E.3
Rogers, J.4
Abril, J.F.5
Agarwal, P.6
-
28
-
-
0842268045
-
Supra-domains - Evolutionary units larger than single protein domains
-
C. Vogel, C. Berzuini, M. Bashton, J. Gough, and S.A. Teichmann Supra-domains - evolutionary units larger than single protein domains J. Mol. Biol. 336 2004 809 823
-
(2004)
J. Mol. Biol.
, vol.336
, pp. 809-823
-
-
Vogel, C.1
Berzuini, C.2
Bashton, M.3
Gough, J.4
Teichmann, S.A.5
-
29
-
-
0037453510
-
Assembly of cell regulatory systems through protein interaction domains
-
T. Pawson, and P. Nash Assembly of cell regulatory systems through protein interaction domains Science 300 2003 445 452
-
(2003)
Science
, vol.300
, pp. 445-452
-
-
Pawson, T.1
Nash, P.2
-
30
-
-
0347125294
-
The SUPERFAMILY database in 2004: Additions and improvements
-
M. Madera, C. Vogel, S.K. Kummerfeld, C. Chothia, and J. Gough The SUPERFAMILY database in 2004: additions and improvements Nucl. Acids Res. 32 2004 D235 D239
-
(2004)
Nucl. Acids Res.
, vol.32
-
-
Madera, M.1
Vogel, C.2
Kummerfeld, S.K.3
Chothia, C.4
Gough, J.5
-
31
-
-
0036677029
-
Predicting protein cellular localization using a domain projection method
-
R. Mott, J. Schultz, P. Bork, and C.P. Ponting Predicting protein cellular localization using a domain projection method Genome Res. 12 2002 1168 1174
-
(2002)
Genome Res.
, vol.12
, pp. 1168-1174
-
-
Mott, R.1
Schultz, J.2
Bork, P.3
Ponting, C.P.4
-
32
-
-
0038141205
-
Classification schemes for protein structure and function
-
C.A. Ouzounis, R.M. Coulson, A.J. Enright, V. Kunin, and J.B. Pereira-Leal Classification schemes for protein structure and function Nature Rev. Genet. 4 2003 508 519
-
(2003)
Nature Rev. Genet.
, vol.4
, pp. 508-519
-
-
Ouzounis, C.A.1
Coulson, R.M.2
Enright, A.J.3
Kunin, V.4
Pereira-Leal, J.B.5
-
33
-
-
0029772552
-
Emergence of preferred structures in a simple model of protein folding
-
H. Li, R. Helling, C. Tang, and N. Wingreen Emergence of preferred structures in a simple model of protein folding Science 273 1996 666 669
-
(1996)
Science
, vol.273
, pp. 666-669
-
-
Li, H.1
Helling, R.2
Tang, C.3
Wingreen, N.4
-
36
-
-
0034634395
-
The evolutionary fate and consequences of duplicate genes
-
M. Lynch, and J.S. Conery The evolutionary fate and consequences of duplicate genes Science 290 2000 1151 1155
-
(2000)
Science
, vol.290
, pp. 1151-1155
-
-
Lynch, M.1
Conery, J.S.2
-
37
-
-
0035344021
-
Yesterday's polyploids and the mystery of diploidization
-
K.H. Wolfe Yesterday's polyploids and the mystery of diploidization Nature Rev. Genet. 2 2001 333 341
-
(2001)
Nature Rev. Genet.
, vol.2
, pp. 333-341
-
-
Wolfe, K.H.1
-
38
-
-
2642580659
-
Duplicate genes increase gene expression diversity within and between species
-
Z. Gu, S.A. Rifkin, K.P. White, and W.H. Li Duplicate genes increase gene expression diversity within and between species Nature Genet. 36 2004 577 579
-
(2004)
Nature Genet.
, vol.36
, pp. 577-579
-
-
Gu, Z.1
Rifkin, S.A.2
White, K.P.3
Li, W.H.4
-
39
-
-
0034612214
-
Decoupled evolution of coding region and mRNA expression patterns after gene duplication: Implications for the neutralist-selectionist debate
-
A. Wagner Decoupled evolution of coding region and mRNA expression patterns after gene duplication: implications for the neutralist-selectionist debate Proc. Natl Acad. Sci. USA 97 2000 6579 6584
-
(2000)
Proc. Natl Acad. Sci. USA
, vol.97
, pp. 6579-6584
-
-
Wagner, A.1
-
40
-
-
19344372220
-
A neutral model of transcriptome evolution
-
P. Khaitovich, G. Weiss, M. Lachmann, I. Hellmann, W. Enard, and B. Muetzel A neutral model of transcriptome evolution PLoS Biol. 2 2004 E132
-
(2004)
PLoS Biol.
, vol.2
, pp. 132
-
-
Khaitovich, P.1
Weiss, G.2
Lachmann, M.3
Hellmann, I.4
Enard, W.5
Muetzel, B.6
-
41
-
-
4644292576
-
The yeast coexpression network has a small-world, scale-free architecture and can be explained by a simple model
-
V. van Noort, B. Snel, and M.A. Huynen The yeast coexpression network has a small-world, scale-free architecture and can be explained by a simple model EMBO Rep. 5 2004 280 284
-
(2004)
EMBO Rep.
, vol.5
, pp. 280-284
-
-
Van Noort, V.1
Snel, B.2
Huynen, M.A.3
-
42
-
-
0036307754
-
The geometry of domain combination in proteins
-
M. Bashton, and C. Chothia The geometry of domain combination in proteins J. Mol. Biol. 315 2002 927 939
-
(2002)
J. Mol. Biol.
, vol.315
, pp. 927-939
-
-
Bashton, M.1
Chothia, C.2
-
43
-
-
0034767547
-
Annotation transfer for genomics: Measuring functional divergence in multi-domain proteins
-
H. Hegyi, and M. Gerstein Annotation transfer for genomics: measuring functional divergence in multi-domain proteins Genome Res. 11 2001 1632 1640
-
(2001)
Genome Res.
, vol.11
, pp. 1632-1640
-
-
Hegyi, H.1
Gerstein, M.2
-
44
-
-
0346801873
-
The gene ontology (GO) database and informatics resource
-
M.A. Harris, J. Clark, A. Ireland, J. Lomax, M. Ashburner, and R. Foulger The gene ontology (GO) database and informatics resource Nucl. Acids Res. 32 2004 D258 D261
-
(2004)
Nucl. Acids Res.
, vol.32
-
-
Harris, M.A.1
Clark, J.2
Ireland, A.3
Lomax, J.4
Ashburner, M.5
Foulger, R.6
-
45
-
-
9144257886
-
The Pfam protein families database
-
A. Bateman, L. Coin, R. Durbin, R.D. Finn, V. Hollich, and S. Griffiths-Jones The Pfam protein families database Nucl. Acids Res. 32 2004 D138 D141
-
(2004)
Nucl. Acids Res.
, vol.32
-
-
Bateman, A.1
Coin, L.2
Durbin, R.3
Finn, R.D.4
Hollich, V.5
Griffiths-Jones, S.6
-
46
-
-
0037251964
-
The InterPro Database, 2003 brings increased coverage and new features
-
N.J. Mulder, R. Apweiler, T.K. Attwood, A. Bairoch, D. Barrell, and A. Bateman The InterPro Database, 2003 brings increased coverage and new features Nucl. Acids Res. 31 2003 315 318
-
(2003)
Nucl. Acids Res.
, vol.31
, pp. 315-318
-
-
Mulder, N.J.1
Apweiler, R.2
Attwood, T.K.3
Bairoch, A.4
Barrell, D.5
Bateman, A.6
|