메뉴 건너뛰기




Volumn 2, Issue 5, 2006, Pages 370-382

Protein family expansions and biological complexity

Author keywords

[No Author keywords available]

Indexed keywords

ANIMALS; GENES; PROTEINS;

EID: 33646909100     PISSN: 1553734X     EISSN: 15537358     Source Type: Journal    
DOI: 10.1371/journal.pcbi.0020048     Document Type: Article
Times cited : (187)

References (46)
  • 1
    • 0016345760 scopus 로고
    • Chemical and biological evolution of nucleotide-binding protein
    • Rossmann MG, Moras D, Olsen KW (1974) Chemical and biological evolution of nucleotide-binding protein. Nature 250: 194-199.
    • (1974) Nature , vol.250 , pp. 194-199
    • Rossmann, M.G.1    Moras, D.2    Olsen, K.W.3
  • 2
    • 85021467943 scopus 로고
    • Structure and function of haemoglobin: II. Some relations between polypeptide chain configuration and amino acid sequence
    • Perutz MF, Kendrew JC, Watson HC (1965) Structure and function of haemoglobin: II. Some relations between polypeptide chain configuration and amino acid sequence. J Mol Biol 13: 669-678.
    • (1965) J Mol Biol , vol.13 , pp. 669-678
    • Perutz, M.F.1    Kendrew, J.C.2    Watson, H.C.3
  • 3
    • 0022102222 scopus 로고
    • Evolution of the proteases of blood coagulation and fibrinolysis by assembly from modules
    • Patthy L (1985) Evolution of the proteases of blood coagulation and fibrinolysis by assembly from modules. Cell 41: 657-663.
    • (1985) Cell , vol.41 , pp. 657-663
    • Patthy, L.1
  • 4
    • 0024149641 scopus 로고
    • The immunoglobulin superfamily - Domains for cell-surface recognition
    • Williams AF, Barclay AN (1988) The immunoglobulin superfamily - Domains for cell-surface recognition. Annu Rev Immunol 6: 381-405.
    • (1988) Annu Rev Immunol , vol.6 , pp. 381-405
    • Williams, A.F.1    Barclay, A.N.2
  • 5
    • 0025900486 scopus 로고
    • Shuffled domains in extracellular proteins
    • Bork P (1991) Shuffled domains in extracellular proteins. FEBS Lett 286: 47-54.
    • (1991) FEBS Lett , vol.286 , pp. 47-54
    • Bork, P.1
  • 6
    • 0027122748 scopus 로고
    • Proteins - 1,000 Families for the molecular biologist
    • Chothia C (1992) Proteins - 1,000 families for the molecular biologist. Nature 357: 543-544.
    • (1992) Nature , vol.357 , pp. 543-544
    • Chothia, C.1
  • 8
    • 0041828241 scopus 로고    scopus 로고
    • Scaling laws in the functional content of genomes
    • van Nimwegen E (2003) Scaling laws in the functional content of genomes. Trends Genet 19: 479-484.
    • (2003) Trends Genet , vol.19 , pp. 479-484
    • Van Nimwegen, E.1
  • 9
    • 1042298811 scopus 로고    scopus 로고
    • Evolution of protein superfamilies and bacterial genome size
    • Ranea JA, Buchan DW, Thornton JM, Orengo CA (2004) Evolution of protein superfamilies and bacterial genome size. J Mol Biol 336: 871-887.
    • (2004) J Mol Biol , vol.336 , pp. 871-887
    • Ranea, J.A.1    Buchan, D.W.2    Thornton, J.M.3    Orengo, C.A.4
  • 10
    • 0032509179 scopus 로고    scopus 로고
    • Comparison of the complete protein sets of worm and yeast: Orthology and divergence
    • Chervitz SA, Aravind L, Sherlock G, Ball CA, Koonin EV, et al. (1998) Comparison of the complete protein sets of worm and yeast: Orthology and divergence. Science 282: 2022-2028.
    • (1998) Science , vol.282 , pp. 2022-2028
    • Chervitz, S.A.1    Aravind, L.2    Sherlock, G.3    Ball, C.A.4    Koonin, E.V.5
  • 11
    • 0032804892 scopus 로고    scopus 로고
    • Origin of multicellular eukaryotes - Insights from proteome comparisons
    • Aravind L, Subramanian G (1999) Origin of multicellular eukaryotes - Insights from proteome comparisons. Curr Opin Genet Dev 9: 688-694.
    • (1999) Curr Opin Genet Dev , vol.9 , pp. 688-694
    • Aravind, L.1    Subramanian, G.2
  • 15
    • 0347519175 scopus 로고    scopus 로고
    • The immunoglobulin superfamily in Drosophila melanogaster and Caenorhabditis elegans and the evolution of complexity
    • Vogel C, Teichmann SA, Chothia C (2003) The immunoglobulin superfamily in Drosophila melanogaster and Caenorhabditis elegans and the evolution of complexity. Development 130: 6317-6328.
    • (2003) Development , vol.130 , pp. 6317-6328
    • Vogel, C.1    Teichmann, S.A.2    Chothia, C.3
  • 16
    • 0028961335 scopus 로고
    • SCOP: A structural classification of proteins database for the investigation of sequences and structures
    • Murzin AG, Brenner SE, Hubbard T, Chothia C (1995) SCOP: A structural classification of proteins database for the investigation of sequences and structures. J Mol Biol 247: 536-540.
    • (1995) J Mol Biol , vol.247 , pp. 536-540
    • Murzin, A.G.1    Brenner, S.E.2    Hubbard, T.3    Chothia, C.4
  • 17
    • 0035798406 scopus 로고    scopus 로고
    • Assignment of homology to genome sequences using a library of hidden Markov models that represent all proteins of known structure
    • Gough J, Karplus K, Hughey R, Chothia C (2001) Assignment of homology to genome sequences using a library of hidden Markov models that represent all proteins of known structure. J Mol Biol 313: 903-919.
    • (2001) J Mol Biol , vol.313 , pp. 903-919
    • Gough, J.1    Karplus, K.2    Hughey, R.3    Chothia, C.4
  • 19
    • 0842268045 scopus 로고    scopus 로고
    • Supradomains - Evolutionary units larger than single protein domains
    • Vogel C, Berzuini C, Bashton M, Gough J, Teichmann SA (2004) Supradomains - Evolutionary units larger than single protein domains. J Mol Biol 336: 809-823.
    • (2004) J Mol Biol , vol.336 , pp. 809-823
    • Vogel, C.1    Berzuini, C.2    Bashton, M.3    Gough, J.4    Teichmann, S.A.5
  • 23
    • 28044431588 scopus 로고    scopus 로고
    • Protein variety and functional diversity: Swiss-Prot annotation in its biological context
    • Boeckmann B, Blatter MC, Famiglietti L, Hinz U, Lane L, et al. (2005) Protein variety and functional diversity: Swiss-Prot annotation in its biological context. C R Biol 328: 882-899.
    • (2005) C R Biol , vol.328 , pp. 882-899
    • Boeckmann, B.1    Blatter, M.C.2    Famiglietti, L.3    Hinz, U.4    Lane, L.5
  • 24
    • 0034284603 scopus 로고    scopus 로고
    • Relation between population density and body size in stream communities
    • Schmid PE, Tokeshi M, Schmid-Araya JM (2000) Relation between population density and body size in stream communities. Science 289: 1557-1560.
    • (2000) Science , vol.289 , pp. 1557-1560
    • Schmid, P.E.1    Tokeshi, M.2    Schmid-Araya, J.M.3
  • 25
    • 0035810199 scopus 로고    scopus 로고
    • Invariant scaling relations across tree-dominated communities
    • Enquist BJ, Niklas KJ (2001) Invariant scaling relations across tree-dominated communities. Nature 410: 655-660.
    • (2001) Nature , vol.410 , pp. 655-660
    • Enquist, B.J.1    Niklas, K.J.2
  • 26
    • 0037155606 scopus 로고    scopus 로고
    • A common rule for the scaling of carnivore density
    • Carbone C, Gittleman JL (2002) A common rule for the scaling of carnivore density. Science 295: 2273-2276.
    • (2002) Science , vol.295 , pp. 2273-2276
    • Carbone, C.1    Gittleman, J.L.2
  • 27
    • 0037052531 scopus 로고    scopus 로고
    • Global dispersal of free-living microbial eukaryote species
    • Finlay BJ (2002) Global dispersal of free-living microbial eukaryote species. Science 296: 1061-1063.
    • (2002) Science , vol.296 , pp. 1061-1063
    • Finlay, B.J.1
  • 28
  • 29
    • 2942568227 scopus 로고    scopus 로고
    • A molecular timescale of eukaryote evolution and the rise of complex multicellular life
    • Hedges SB, Blair JE, Venturi ML, Shoe JL (2004) A molecular timescale of eukaryote evolution and the rise of complex multicellular life. BMC Evol Biol 4: 2.
    • (2004) BMC Evol Biol , vol.4 , pp. 2
    • Hedges, S.B.1    Blair, J.E.2    Venturi, M.L.3    Shoe, J.L.4
  • 31
    • 19344365307 scopus 로고    scopus 로고
    • Planting the seeds of a new paradigm
    • Matzke MA, Matzke AJ (2004) Planting the seeds of a new paradigm. PLoS Biol 2: E133.
    • (2004) PLoS Biol , vol.2
    • Matzke, M.A.1    Matzke, A.J.2
  • 32
    • 0036066765 scopus 로고    scopus 로고
    • The role of lineage-specific gene family expansion in the evolution of eukaryotes
    • Lespinet O, Wolf YI, Koonin EV, Aravind L (2002) The role of lineage-specific gene family expansion in the evolution of eukaryotes. Genome Res 12: 1048-1059.
    • (2002) Genome Res , vol.12 , pp. 1048-1059
    • Lespinet, O.1    Wolf, Y.I.2    Koonin, E.V.3    Aravind, L.4
  • 33
    • 0034625235 scopus 로고    scopus 로고
    • The impact of comparative genomics on our understanding of evolution
    • Koonin EV, Aravind L, Kondrashov AS (2000) The impact of comparative genomics on our understanding of evolution. Cell 101: 573-576.
    • (2000) Cell , vol.101 , pp. 573-576
    • Koonin, E.V.1    Aravind, L.2    Kondrashov, A.S.3
  • 36
    • 0000187138 scopus 로고
    • The response of protein structures to amino-acid-sequence changes
    • Lesk AM, Chothia CH (1986) The response of protein structures to amino-acid-sequence changes. Philos Transact A Math Phys Eng Sci 317: 345-356.
    • (1986) Philos Transact A Math Phys Eng Sci , vol.317 , pp. 345-356
    • Lesk, A.M.1    Chothia, C.H.2
  • 37
    • 0035816218 scopus 로고    scopus 로고
    • Domain combinations in archaeal, eubacterial and eukaryotic proteomes
    • Apic G, Gough J, Teichmann SA (2001) Domain combinations in archaeal, eubacterial and eukaryotic proteomes. J Mol Biol 310: 311-325.
    • (2001) J Mol Biol , vol.310 , pp. 311-325
    • Apic, G.1    Gough, J.2    Teichmann, S.A.3
  • 38
    • 12344261833 scopus 로고    scopus 로고
    • The relationship between domain duplication and recombination
    • Vogel C, Teichmann SA, Pereira-Leal JB (2005) The relationship between domain duplication and recombination. J Mol Biol 346: 355-365.
    • (2005) J Mol Biol , vol.346 , pp. 355-365
    • Vogel, C.1    Teichmann, S.A.2    Pereira-Leal, J.B.3
  • 39
    • 0035865239 scopus 로고    scopus 로고
    • Evolutionary analyses of the human genome
    • Li WH, Gu Z, Wang H, Nekrutenko A (2001) Evolutionary analyses of the human genome. Nature 409: 847-849.
    • (2001) Nature , vol.409 , pp. 847-849
    • Li, W.H.1    Gu, Z.2    Wang, H.3    Nekrutenko, A.4
  • 40
    • 0035313496 scopus 로고    scopus 로고
    • Nuclear receptors in nematodes: Themes and variations
    • Sluder AE, Maina CV (2001) Nuclear receptors in nematodes: themes and variations. Trends Genet 17: 206-213.
    • (2001) Trends Genet , vol.17 , pp. 206-213
    • Sluder, A.E.1    Maina, C.V.2
  • 41
    • 0035907342 scopus 로고    scopus 로고
    • Molecular biology and evolution. Can genes explain biological complexity?
    • Szathmary E, Jordan F, Pal C (2001) Molecular biology and evolution. Can genes explain biological complexity? Science 292: 1315-1316.
    • (2001) Science , vol.292 , pp. 1315-1316
    • Szathmary, E.1    Jordan, F.2    Pal, C.3
  • 43
    • 0345306751 scopus 로고    scopus 로고
    • The origins of genome complexity
    • Lynch M, Conery J (2003) The origins of genome complexity. Science 302: 1401-1404.
    • (2003) Science , vol.302 , pp. 1401-1404
    • Lynch, M.1    Conery, J.2
  • 44
    • 0034635465 scopus 로고    scopus 로고
    • Cell biology: Conservation and novelty in the evolution of cell adhesion and extracellular matrix genes
    • Hutter H, Vogel BE, Plenefisch JD, Norris CR, Proenca RB, et al. (2000) Cell biology: Conservation and novelty in the evolution of cell adhesion and extracellular matrix genes. Science 287: 989-994.
    • (2000) Science , vol.287 , pp. 989-994
    • Hutter, H.1    Vogel, B.E.2    Plenefisch, J.D.3    Norris, C.R.4    Proenca, R.B.5
  • 45
    • 0034710157 scopus 로고    scopus 로고
    • The evolution of cell adhesion
    • Hynes RO, Zhao Q (2000) The evolution of cell adhesion. J Cell Biol 150: F89-F96.
    • (2000) J Cell Biol , vol.150
    • Hynes, R.O.1    Zhao, Q.2
  • 46
    • 0037314097 scopus 로고    scopus 로고
    • Matrix2png: A utility for visualizing matrix data
    • Pavlidis P, Noble WS (2003) Matrix2png: A utility for visualizing matrix data. Bioinformatics 19: 295-296.
    • (2003) Bioinformatics , vol.19 , pp. 295-296
    • Pavlidis, P.1    Noble, W.S.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.