SUPERFAMILY: HMMs representing all proteins of known structure. SCOP sequence searches, alignments and genome assignments

Nucleic Acids Research

Volumn 30, Issue 1, 2002, Pages 268-272

  Gough, Julian ^a   Chothia, Cyrus ^a  

^a MRC LABORATORY OF MOLECULAR BIOLOGY   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID; NUCLEOTIDE;

AMINO ACID SEQUENCE; ARTICLE; CLASSIFICATION; COMPUTER MODEL; COMPUTER PREDICTION; COMPUTER SYSTEM; GENETIC ANALYSIS; GENOME; INFORMATION PROCESSING; INTERNET; MOLECULAR EVOLUTION; MOLECULAR LIBRARY; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROBABILITY; PROTEIN ANALYSIS; PROTEIN DOMAIN; PROTEIN FAMILY; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS; SEQUENCE DATABASE; STATISTICAL ANALYSIS; STRUCTURE ANALYSIS; SUPERFAMILY DATABASE;

EID: 0036087169     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/30.1.268     Document Type: Article

References (10)

1. SCOP: A structural classification of proteins database for the investigation of sequences and structures
2. Hidden Markov models for detecting remote protein homologies
3. Assignment of homology to genome sequences using a library of hidden Markov models that represent all proteins of known structure
4. The Pfam protein families database
5. SMART: A web-based tool for the study of genetically mobile domains
6. InterPro-an integrated documentation resource for protein families, domains and functional sites
7. Gapped blast and psi-blast: A new generation of protein database search programs
8. CATH - A hierarchic classification of protein domain structures
9. Domain combinations in archael, eubacterial and eukaryotic proteins
10. The evolution and structural anatomy of the small molecule metabolic pathways in Escherichia coli