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Volumn 17, Issue 7, 2012, Pages 7666-7694

Residue-Ligand interaction energy (ReLIE) on a receptor-dependent 3d-QSAR analysis of s- and NH-DABOs as non-nucleoside reverse transcriptase inhibitors

Author keywords

AIDS HIV 1; DABO derivatives; Molecular dynamics; Receptor dependent 3D QSAR; Residue ligand interaction energy; Reverse transcriptase

Indexed keywords

AMINO ACID; CELL SURFACE RECEPTOR; LIGAND; NUCLEOSIDE; PYRIMIDINE DERIVATIVE; RNA DIRECTED DNA POLYMERASE; RNA DIRECTED DNA POLYMERASE INHIBITOR;

EID: 84864612129     PISSN: None     EISSN: 14203049     Source Type: Journal    
DOI: 10.3390/molecules17077666     Document Type: Article
Times cited : (7)

References (95)
  • 3
    • 77956647281 scopus 로고    scopus 로고
    • Antiretroviral drugs
    • de Clercq, E. Antiretroviral drugs. Curr. Opin. Pharmacol. 2010, 10, 507-515.
    • (2010) Curr. Opin. Pharmacol , vol.10 , pp. 507-515
    • De Clercq, E.1
  • 4
    • 0032437454 scopus 로고    scopus 로고
    • The role of non-nucleoside reverse transcriptase inhibitors (NNRTIs) in the therapy of HIV-1 infection
    • DOI 10.1016/S0166-3542(98)00025-4, PII S0166354298000254
    • de Clercq, E. The role of non-nucleoside reverse transcriptase inhibitors in the therapy of HIV-1 infection. Antiv. Res. 1998, 38, 153-179. (Pubitemid 29065480)
    • (1998) Antiviral Research , vol.38 , Issue.3 , pp. 153-179
    • De Clercq, E.1
  • 5
    • 2942524068 scopus 로고    scopus 로고
    • Current status of the non-nucleoside reverse transcriptase inhibitors of human immunodeficiency virus type 1
    • DOI 10.2174/1568026043388420
    • Balzarini, J. Current status of the non-nucleoside reverse transcriptase inhibitors of human immunodeficiency virus type 1. Curr. Top. Med. Chem. 2004, 4, 921-944. (Pubitemid 38864691)
    • (2004) Current Topics in Medicinal Chemistry , vol.4 , Issue.9 , pp. 921-944
    • Balzarini, J.1
  • 6
    • 15444380338 scopus 로고    scopus 로고
    • From 4,5,6,7-tetrahydro-5-methylimidazo[4,5,1-jk](1,4)benzodiazepin-2(1H) - one (TIBO) to etravirine (TMC125): Fifteen years of research on non-nucleoside inhibitors of HIV-1 reverse transcriptase
    • DOI 10.1021/jm040127p
    • de Corte, B.L. From 4,5,6,7-tetrahydro-5-methylimidazo[4,5,1-jk](1,4) benzodiazepin-2(1H)-one (TIBO) to etravirine (TMC125): fifteen years of research on non-nucleoside inhibitors of HIV-1 reverse transcriptase. J. Med. Chem. 2005, 48, 1689-1696. (Pubitemid 40396298)
    • (2005) Journal of Medicinal Chemistry , vol.48 , Issue.6 , pp. 1689-1696
    • De Corte, B.L.1
  • 7
    • 11144233697 scopus 로고    scopus 로고
    • HIV reverse transcriptase structures: Designing new inhibitors and understanding mechanisms of drug resistance
    • DOI 10.1016/j.tips.2004.11.003, PII S0165614704003098
    • Ren, J.; Stammers, D.K. HIV reverse transcriptase structures: designing new inhibitors and understanding mechanisms of drug resistance. Trends Pharmacol. Sci. 2005, 26, 4-7. (Pubitemid 40052701)
    • (2005) Trends in Pharmacological Sciences , vol.26 , Issue.1 , pp. 4-7
    • Ren, J.1    Stammers, D.K.2
  • 8
    • 33747593758 scopus 로고    scopus 로고
    • Replacement of the metabolically labile methyl esters in the alkenyldiarylmethane series of non-nucleoside reverse transcriptase inhibitors with isoxazolone, isoxazole, oxazolone, or cyano substituents
    • DOI 10.1021/jm060449o
    • Deng, B.L.; Hartman, T.L.; Buckheit, R.W.; Pannecouque, C.; de Clercq, E.; Cushman, M. Replacement of the metabolically labile methyl esters in the alkenyldiarylmethane series of nonnucleoside reverse transcriptase inhibitors with isoxazolone, isoxazole, oxazolone, or cyano substituents. J. Med. Chem. 2006, 49, 5316-5323. (Pubitemid 44262035)
    • (2006) Journal of Medicinal Chemistry , vol.49 , Issue.17 , pp. 5316-5323
    • Deng, B.-L.1    Hartman, T.L.2    Buckheit Jr., R.W.3    Pannecouque, C.4    De Clercq, E.5    Cushman, M.6
  • 9
    • 38749147488 scopus 로고    scopus 로고
    • Towards discovering dual functional inhibitors against both wild type and K103N mutant HIV-1 reverse transcriptases: Molecular docking and QSAR studies on 4,1-benzoxazepinone analogues
    • Zheng, M.; Du, L.; Shen, J.; Luo, X.; Zhu, W.; Jiang, H. Towards discovering dual functional inhibitors against both wild type and K103N mutant HIV-1 reverse transcriptases: molecular docking and QSAR studies on 4,1-benzoxazepinone analogues. J. Comput. Aided Mol. Des. 2006, 20, 281-289.
    • (2006) J. Comput. Aided Mol. des , vol.20 , pp. 281-289
    • Zheng, M.1    Du, L.2    Shen, J.3    Luo, X.4    Zhu, W.5    Jiang, H.6
  • 10
    • 0029967721 scopus 로고    scopus 로고
    • HIV-1 dynamics in vivo: Virion clearance rate, infected cell life-span, and viral generation time
    • Perelson, A.S.; Neumann, A.U.; Markowitz, M.; Leonard, J.M.; Ho, D.D. HIV-1 dynamics in vivo: Virion clearance rate, infected cell life-span, and viral generation time. Science 1996, 271, 1582-1586. (Pubitemid 26097216)
    • (1996) Science , vol.271 , Issue.5255 , pp. 1582-1586
    • Perelson, A.S.1    Neumann, A.U.2    Markowitz, M.3    Leonard, J.M.4    Ho, D.D.5
  • 11
    • 0028952146 scopus 로고
    • HIV population dynamics in vivo: Implications for genetic variation, pathogenesis, and therapy
    • Coffin, J.M. HIV population dynamics in vivo: Implications for genetic variation, pathogenesis, and therapy. Science 1995, 267, 483-489.
    • (1995) Science , vol.267 , pp. 483-489
    • Coffin, J.M.1
  • 13
    • 2942627670 scopus 로고    scopus 로고
    • HIV-chemotherapy and -prophylaxis: New drugs, leads and approaches
    • DOI 10.1016/j.biocel.2004.02.015, PII S1357272504000913, Molecular Biology of HIV
    • de Clercq, E. HIV-chemotherapy and prophylaxis: New drugs, leads and approaches. Int. J. Biochem. Cell Biol. 2004, 36, 1800-1822. (Pubitemid 38748534)
    • (2004) International Journal of Biochemistry and Cell Biology , vol.36 , Issue.9 , pp. 1800-1822
    • De Clercq, E.1
  • 15
    • 19744364217 scopus 로고    scopus 로고
    • The molecular basis of resilience to the effect of the Lys103Asn mutation in non-nucleoside HIV-1 reverse transcriptase inhibitors studied by targeted molecular dynamics simulations
    • DOI 10.1021/ja042289g
    • Rodriguez-Barrios, F.; Balzarini, J.; Gago, F. The molecular basis of resilience to the effect of the Lys103Asn mutation in non-nucleoside HIV-1 reverse transcriptase inhibitors studied by targeted molecular dynamics simulations. J. Am. Chem. Soc. 2005, 127, 7570-7578. (Pubitemid 40746043)
    • (2005) Journal of the American Chemical Society , vol.127 , Issue.20 , pp. 7570-7578
    • Rodriguez-Barrios, F.1    Balzarini, J.2    Gago, F.3
  • 16
    • 29144436035 scopus 로고    scopus 로고
    • Effect of a bound non-nucleoside RT inhibitor on the dynamics of wild-type and mutant HIV-1 reverse transcriptase
    • DOI 10.1021/ja053973d
    • Zhou, Z.; Madrid, M.; Evanseck, J.D.; Madura, J.D. Effect of a bound non-nucleoside RT inhibitor on the dynamics of wild-type and mutant HIV-1 reverse transcriptase. J. Am. Chem. Soc. 2005, 127, 17253-17260. (Pubitemid 41794061)
    • (2005) Journal of the American Chemical Society , vol.127 , Issue.49 , pp. 17253-17260
    • Zhou, Z.1    Madrid, M.2    Evanseck, J.D.3    Madura, J.D.4
  • 18
    • 13144282707 scopus 로고    scopus 로고
    • Structures of Tyr188Leu mutant and wild-type HIV-1 reverse transcriptase complexed with the non-nucleoside inhibitor HBY 097: Inhibitor flexibility is a useful design feature for reducing drug resistance
    • DOI 10.1006/jmbi.1998.2171
    • Hsiou, Y.; Das, K.; Ding, J.; Clark, A.D.; Jr Kleim, J.P. Structures of Tyr188Leu mutant and wild-type HIV-1 reverse transcriptase complexed with the nonnucleoside inhibitor HBY097: inhibitor flexibility is a useful design feature for reducing drug resistance. J. Mol. Biol. 1998, 284, 313-323. (Pubitemid 28542456)
    • (1998) Journal of Molecular Biology , vol.284 , Issue.2 , pp. 313-323
    • Hsiou, Y.1    Das, K.2    Ding, J.3    Clark Jr., A.D.4    Kleim, J.-P.5    Rosner, M.6    Winkler, I.7    Riess, G.8    Hughes, S.H.9    Arnold, E.10
  • 21
    • 33746838109 scopus 로고    scopus 로고
    • Structural insights into mechanisms of non-nucleoside drug resistance for HIV-1 reverse transcriptases mutated at codons 101 or 138
    • DOI 10.1111/j.1742-4658.2006.05392.x
    • Ren, J.; Nichols, C.E.; Stamp, A.; Chamberlain, P.P.; Ferris, R.; Weaver, K.L.; Short, S.A.; Stammers, D.K. Structural insights into mechanisms of nonnucleoside drug resistance for HIV-1 reverse transcriptases mutated at codons 101 or 138.FEBS J. 2006, 273, 3850-3860. (Pubitemid 44172616)
    • (2006) FEBS Journal , vol.273 , Issue.16 , pp. 3850-3860
    • Ren, J.1    Nichols, C.E.2    Stamp, A.3    Chamberlain, P.P.4    Ferris, R.5    Weaver, K.L.6    Short, S.A.7    Stammers, D.K.8
  • 22
    • 0037137588 scopus 로고    scopus 로고
    • Synthesis of novel N-1 (allyloxymethyl) analogues of 6-benzyl-1- (ethoxymethyl)-5-isopropyluracil (MKC-442, emivirine) with improved activity against HIV-1 and its mutants
    • DOI 10.1021/jm020949r
    • El-Brollosy, N.R.; Jorgensen, P.T.; Dahan, B.; Boel, A.M.; Pedersen, E.B.; Nielsen, C. Synthesis of novel N-1 (allyloxymethyl) analogues of 6-benzyl-1-(ethoxymethyl)-5-isopropyluracil (MKC-442, emivirine) with improved activity against HIV-1 and its mutants. J. Med. Chem. 2002, 45, 5721-5726. (Pubitemid 35453764)
    • (2002) Journal of Medicinal Chemistry , vol.45 , Issue.26 , pp. 5721-5726
    • El-Brollosy, N.R.1    Jorgensen, P.T.2    Dahan, B.3    Boel, A.M.4    Pedersen, E.B.5    Nielsen, C.6
  • 23
    • 0034722975 scopus 로고    scopus 로고
    • Validation of a model for the complex of HIV-1 reverse transcriptase with sustiva through computation of resistance profiles [18]
    • DOI 10.1021/ja003113r
    • Rizzo, R.C.; Wang, D.P.; Tirado-Rives, J.; Jorgensen, W.L. Validation of a model for the complex of HIV-1 reverse transcriptase with sustiva through computation of resistance profiles. J. Am. Chem. Soc. 2000, 212, 12898-12900. (Pubitemid 32052233)
    • (2000) Journal of the American Chemical Society , vol.122 , Issue.51 , pp. 12898-12900
    • Rizzo, R.C.1    Wang, D.-P.2    Tirado-Rives, J.3    Jorgensen, W.L.4
  • 25
    • 0033524008 scopus 로고    scopus 로고
    • Design of MKC-442 (emivirine) analogues with improved activity against drug-resistant HIV mutants
    • DOI 10.1021/jm990192c
    • Hopkins, A.L.; Ren, J.; Tanaka, H.; Baba, M.; Okamato, M.; Stuart, D.I.; Stammers, D.K. Design of MKC-442 (emivirine) analogues with improved activity against drug-resistant HIV mutants. J. Med. Chem. 1999, 42, 4500-4505. (Pubitemid 29530005)
    • (1999) Journal of Medicinal Chemistry , vol.42 , Issue.22 , pp. 4500-4505
    • Hopkins, A.L.1    Ren, J.2    Tanaka, H.3    Baba, M.4    Okamato, M.5    Stuart, D.I.6    Stammers, D.K.7
  • 27
    • 0033959183 scopus 로고    scopus 로고
    • Antiretroviral therapy: State of the HAART
    • DOI 10.1016/S0166-3542(99)00068-6, PII S0166354299000686
    • Vella, S.; Palmisano, L. Antiretroviral therapy: state of the HAART. Antiviral Res. 2000, 45, 1-7. (Pubitemid 30074188)
    • (2000) Antiviral Research , vol.45 , Issue.1 , pp. 1-7
    • Vella, S.1    Palmisano, L.2
  • 31
    • 0003840821 scopus 로고
    • Oxford University Press: New York, NY, USA
    • Livingstone, D. Data Analysis for Chemists; Oxford University Press: New York, NY, USA, 1995; p. 356.
    • (1995) Data Analysis for Chemists , pp. 356
    • Livingstone, D.1
  • 32
    • 45249127902 scopus 로고
    • Principal components analysis and partial least square regression
    • Glenn, W.G.; Dunn, I.W.J.; Scott, D.R. Principal components analysis and partial least square regression. Tetrahedron Comput. Meth. 1989, 2, 349-376.
    • (1989) Tetrahedron Comput. Meth , vol.2 , pp. 349-376
    • Glenn, W.G.1    Dunn, I.W.J.2    Scott, D.R.3
  • 33
    • 33749234418 scopus 로고    scopus 로고
    • Free-energy force-field three-dimensional quantitative structure-activity relationship analysis of a set of p38-mitogen activated protein kinase inhibitors
    • DOI 10.1007/s00894-006-0106-2
    • Romeiro, N.C.; Albuquerque, M.G.; Alencastro, R.B.; Ravi, M.; Hopfinger, A.J.; Free-energy force-field three-dimensional quantitative structure-activity relationship analysis of a set of p38- mitogen activated protein kinase inhibitors. J. Mol. Model. 2006, 12, 855-868. (Pubitemid 44480316)
    • (2006) Journal of Molecular Modeling , vol.12 , Issue.6 , pp. 855-868
    • Romeiro, N.C.1    Albuquerque, M.G.2    De Alencastro, R.B.3    Ravi, M.4    Hopfinger, A.J.5
  • 34
    • 84864602508 scopus 로고    scopus 로고
    • Modelos de CoMFA e CoMSIA de antagonistas α1-adrenérgicos
    • M.Sc Dissertation, Instituto de Química, UFRJ, Rio de Janeiro, Brazil
    • Brito, M.A. Modelos de CoMFA e CoMSIA de antagonistas α1-adrenérgicos N-fenilpiperazínicos. M.Sc. Dissertation, Instituto de Química, UFRJ, Rio de Janeiro, Brazil, 2004.
    • (2004) N-fenilpiperazínicos
    • Brito, M.A.1
  • 35
    • 0031085412 scopus 로고    scopus 로고
    • QSAR based on multiple linear regression and PLS methods for the anti-HIV activity of a large group of HEPT derivatives
    • Luco, J.M.; Ferretti, F.H. QSAR based on multiple linear regression and PLS methods for the anti-HIV activity of a large group of HEPT derivatives. J. Chem. Inf. Comput. Sci. 1997, 37, 392-401. (Pubitemid 127603544)
    • (1997) Journal of Chemical Information and Computer Sciences , vol.37 , Issue.2 , pp. 392-401
    • Luco, J.M.1    Ferretti, F.H.2
  • 36
    • 0002924226 scopus 로고    scopus 로고
    • Genetic partial least squares in QSAR
    • Devillers, J., Ed.; Academic Press: San Diego, CA, USA
    • Dunn, W.J.; Rogers, D. Genetic partial least squares in QSAR. In Genetic Algorithms in Molecular Modeling; Devillers, J., Ed.; Academic Press: San Diego, CA, USA, 1996.
    • (1996) Genetic Algorithms in Molecular Modeling
    • Dunn, W.J.1    Rogers, D.2
  • 38
    • 84942872401 scopus 로고    scopus 로고
    • Quantitative approaches to structure-activity relationship
    • Wermuth, C.A., Ed.; Academic Press: London, UK
    • Waterbeemd, H.; Rose, S. Quantitative approaches to structure-activity relationship. In The Practice of Medicinal Chemistry; Wermuth, C.A., Ed.; Academic Press: London, UK, 2003, 782, 351-369.
    • (2003) The Practice of Medicinal Chemistry , vol.782 , pp. 351-369
    • Waterbeemd, H.1    Rose, S.2
  • 39
    • 85046230495 scopus 로고    scopus 로고
    • The SAR and QSAR approaches to drug design
    • John Wiley & Sons: New York, NY, USA
    • Thomas, G. The SAR and QSAR approaches to drug design. In Fundamentals of Medicinal Chemistry; John Wiley & Sons: New York, NY, USA, 2003.
    • (2003) Fundamentals of Medicinal Chemistry
    • Thomas, G.1
  • 40
    • 0007501392 scopus 로고    scopus 로고
    • Receptor-based prediction of binding affinities
    • Kubinyi, H., Folkers, G., Martin, Y.C., Eds.; Kluwer Academic Publishers: London, UK
    • Oprea, T.I.; Marshall, G.R. Receptor-based prediction of binding affinities. In 3D-QSAR in Drug Design; Kubinyi, H., Folkers, G., Martin, Y.C., Eds.; Kluwer Academic Publishers: London, UK, 2002.
    • (2002) 3D-QSAR in Drug Design
    • Oprea, T.I.1    Marshall, G.R.2
  • 41
    • 0030771347 scopus 로고    scopus 로고
    • QSAR and 3D QSAR in drug design. Part 1: Methodology
    • DOI 10.1016/S1359-6446(97)01079-9, PII S1359644697010799
    • Kubinyi, H. QSAR and 3D-QSAR in drug design. Part 1: Methodology. Drug. Discov. Today 1997, 11, 457-467. (Pubitemid 27450428)
    • (1997) Drug Discovery Today , vol.2 , Issue.11 , pp. 457-467
    • Kubinyi, H.1
  • 42
    • 0141994397 scopus 로고    scopus 로고
    • Quantitative structure-based design: Formalism and application of receptor-dependent RD-4D-QSAR analysis to a set of glucose analogue inhibitors of glycogen phosphorylase
    • Pan, D.; Tseng, Y.; Hopfinger, A.J. Quantitative structure-based design: formalism and application of receptor-dependent RD-4D-QSAR analysis to a set of glucose analogue inhibitors of glycogen phosphorylase. J. Chem. Inf. Comp. Sci. 2003, 43, 1591-1607.
    • (2003) J. Chem. Inf. Comp. Sci , vol.43 , pp. 1591-1607
    • Pan, D.1    Tseng, Y.2    Hopfinger, A.J.3
  • 44
    • 0023751431 scopus 로고    scopus 로고
    • Comparative molecular field analysis (CoMFA) 1. Effect of shape on binding of steroids to carrier proteins
    • Cramer III, R.D.; Patterson, D.E.; Bunce, J.D. Comparative molecular field analysis (CoMFA) 1. Effect of shape on binding of steroids to carrier proteins. J. Am. Chem. Soc. 1998, 110, 5959-5967.
    • (1998) J. Am. Chem. Soc , vol.110 , pp. 5959-5967
    • Cramer Iii, R.D.1    Patterson, D.E.2    Bunce, J.D.3
  • 45
    • 0037168045 scopus 로고    scopus 로고
    • Comparative Binding Energy (COMBINE) analysis of OppA-peptide complexes to relate structure to binding thermodynamics
    • DOI 10.1021/jm020900l
    • Wang, T.; Wade, R.C. Comparative binding energy (COMBINE) analysis of OppA-peptide complexes to relate structure to binding thermodynamics. J. Med. Chem. 2002, 45, 4828-4837. (Pubitemid 35192772)
    • (2002) Journal of Medicinal Chemistry , vol.45 , Issue.22 , pp. 4828-4837
    • Wang, T.1    Wade, R.C.2
  • 46
    • 0029000922 scopus 로고
    • Prediction of drug binding affinities by comparative binding energy analysis
    • Ortiz, A.R.; Pisabarro, M.T.; Gago, F.; Wade, R.C. Prediction of drug binding affinities by comparative binding energy analysis. J. Med. Chem. 1995, 38, 2681-2691.
    • (1995) J. Med. Chem , vol.38 , pp. 2681-2691
    • Ortiz, A.R.1    Pisabarro, M.T.2    Gago, F.3    Wade, R.C.4
  • 47
    • 79955155503 scopus 로고    scopus 로고
    • 2nd ed.; Brasport: Rio de Janeiro, Brazil
    • Linden, R. Algoritmos Genéticos, 2nd ed.; Brasport: Rio de Janeiro, Brazil, 2008; p. 428.
    • (2008) Algoritmos Genéticos , pp. 428
    • Linden, R.1
  • 48
    • 33749234418 scopus 로고    scopus 로고
    • Free-energy force-field three-dimensional quantitative structure-activity relationship analysis of a set of p38-mitogen activated protein kinase inhibitors
    • DOI 10.1007/s00894-006-0106-2
    • Romeiro, N.C.; Albuquerque, M.G.; Alencastro, R.B.; Ravi, M.; Hopfinger, A.J. Free-energy force-field three-dimensional quantitative structure-activity relationship analysis of a set of p38-mitogen activated protein kinase inhibitors. J. Mol. Model. 2006, 12, 855-868. (Pubitemid 44480316)
    • (2006) Journal of Molecular Modeling , vol.12 , Issue.6 , pp. 855-868
    • Romeiro, N.C.1    Albuquerque, M.G.2    De Alencastro, R.B.3    Ravi, M.4    Hopfinger, A.J.5
  • 49
    • 0037424611 scopus 로고    scopus 로고
    • Artificial neural networks and genetic algorithms in QSAR
    • Niculescu, S.P. Artificial neural networks and genetic algorithms in QSAR. J. Mol. Struct.-THEOCHEM 2003, 622, 71-83.
    • (2003) J. Mol. Struct.-THEOCHEM , vol.622 , pp. 71-83
    • Niculescu, S.P.1
  • 50
    • 84864629240 scopus 로고    scopus 로고
    • Métodos de docking receptor-ligante para o desenho racional de compostos bioativos
    • Morgon, N.H., Coutinho, K., Eds.; Livraria da Física: São Paulo, Brazil
    • Magalhães, C.S.; Barbosa, H.J.C.; Dardenne, L.E. Métodos de docking receptor-ligante para o desenho racional de compostos bioativos. In Métodos de Química Teórica e Modelagem Molecular; Morgon, N.H., Coutinho, K., Eds.; Livraria da Física: São Paulo, Brazil, 2007; p. 654.
    • (2007) Métodos de Química Teórica e Modelagem Molecular , pp. 654
    • Magalhães, C.S.1    Barbosa, H.J.C.2    Dardenne, L.E.3
  • 51
    • 84864587111 scopus 로고    scopus 로고
    • Busca com informação e exploração
    • Elsevier: Rio de Janeiro, Brazil
    • Russell S; Norvig P. Busca com informação e exploração. In Inteligência Artificial; Elsevier: Rio de Janeiro, Brazil, 2001; p. 1034.
    • (2001) Inteligência Artificial , pp. 1034
    • Russell, S.1    Norvig, P.2
  • 52
    • 0037191112 scopus 로고    scopus 로고
    • QSAR study of the calcium channel antagonist activity of some recently synthesized dihydropyridine derivatives. An application of genetic algorithm for variable selection in MLR and PLS methods
    • DOI 10.1016/S0169-7439(02)00068-0, PII S0169743902000680
    • Hemmateenejad, B.; Miri, R.; Akhond, M.; Shamsipur, M. QSAR study of the calcium channel antagonist activity of some recently synthesized dihydropyridine derivatives: an application of genetic algorithm for variable selection in MLR and PLS methods. Chem. Intell. Lab. Syst. 2002, 64, 91-99. (Pubitemid 35304562)
    • (2002) Chemometrics and Intelligent Laboratory Systems , vol.64 , Issue.1 , pp. 91-99
    • Hemmateenejad, B.1    Miri, R.2    Akhond, M.3    Shamsipur, M.4
  • 53
    • 0028467707 scopus 로고
    • Applications of genetic function approximation to quantitative structure-activity relationships and quantitative structure-property relationships
    • Rogers, D.; Hopfinger, A.J. Applications of genetic function approximation to quantitative structure-activity relationships and quantitative structure-property relationships. J. Chem. Inf. Comput. Sci. 1994, 34, 854-866.
    • (1994) J. Chem. Inf. Comput. Sci , vol.34 , pp. 854-866
    • Rogers, D.1    Hopfinger, A.J.2
  • 54
    • 0002321387 scopus 로고    scopus 로고
    • Some theory and examples of genetic function approximation with comparison to evolutionary techniques
    • Devillers, J., Ed.; Academic Press: San Diego, CA, USA
    • Rogers, D. Some theory and examples of genetic function approximation with comparison to evolutionary techniques. In Genetic Algorithms in Molecular Modeling; Devillers, J., Ed.; Academic Press: San Diego, CA, USA, 1996.
    • (1996) Genetic Algorithms in Molecular Modeling
    • Rogers, D.1
  • 58
    • 0037191111 scopus 로고    scopus 로고
    • Combining PLS with GA-GP for QSAR
    • DOI 10.1016/S0169-7439(02)00050-3, PII S0169743902000503
    • Tang, K.; Li, T. Combining PLS with GA-GP for QSAR. Chemom. Intel. Lab. Syst. 2002, 64, 55-64. (Pubitemid 35304559)
    • (2002) Chemometrics and Intelligent Laboratory Systems , vol.64 , Issue.1 , pp. 55-64
    • Tang, K.1    Li, T.2
  • 63
    • 10744230514 scopus 로고    scopus 로고
    • Computer-Aided Design, Synthesis, and Anti-HIV-1 Activity in Vitro of 2-Alkylamino-6-[1-(2,6-difluorophenyl)alkyl]-3,4-dihydro-5-alkylpyrimidin-4(3H) -ones as Novel Potent Non-Nucleoside Reverse Transcriptase Inhibitors, Also Active Against the Y181C Variant
    • DOI 10.1021/jm0309856
    • Ragno, R.; Mai, A.; Sbardella, G.; Artico, M.; Massa, S.; Musiu, C.; Mura, M.; Marturana, F.; Cadeddu, A.; La Colla, P. Computer-aided design, synthesis, and anti-HIV-1 activity in vitro of 2-alkylamino-6-[1-(2,6- difluorophenyl)alkyl]-3,4-dihydro-5-alkylpyrimidin-4(3H)-ones as a novel potent non-nucleoside reverse transcriptase inhibitors, also active against the Y181C variant. J. Med. Chem. 2004, 47, 928-934. (Pubitemid 38176795)
    • (2004) Journal of Medicinal Chemistry , vol.47 , Issue.4 , pp. 928-934
    • Ragno, R.1    Mai, A.2    Sbardella, G.3    Artico, M.4    Massa, S.5    Musiu, C.6    Mura, M.7    Marturana, F.8    Cadeddu, A.9    La Colla, P.10
  • 64
    • 0033602141 scopus 로고    scopus 로고
    • 5-alkyl-2-(alkylthio)-6-(2,6-dihalophenylmethyl)-3,4-dihydropyrimidin- 4(3H)-ones: Novel potent and selective dihydro-alkoxy-benzyl-oxopyrimidine derivatives
    • DOI 10.1021/jm980260f
    • Mai, A.; Artico, M.; Sbardella, G.; Massa, S.; Novellino, E.; Greco, G.; Loi, A.G.; Tramontano, E.; Marongiu, M.E.; La Colla, P. 5-Alkyl-2-(alkylthio)-6- (2,6-dihalophenylmethyl)-3,4- dihydropyrimidin-4(3H)-ones: Novel potent and selective dihydro-alkoxy-benzyl-oxopyrimidine derivatives. J. Med. Chem. 1999, 42, 619-627. (Pubitemid 29110778)
    • (1999) Journal of Medicinal Chemistry , vol.42 , Issue.4 , pp. 619-627
    • Mai, A.1    Artico, M.2    Sbardella, G.3    Massa, S.4    Novellino, E.5    Greco, G.6    Loi, A.G.7    Tramontane, E.8    Marongiu, M.E.9    La Colla, P.10
  • 68
    • 0029976422 scopus 로고    scopus 로고
    • Complexes of HIV-1 reverse transcriptase with inhibitors of the HEPT series reveal conformational changes relevant to the design of potent non-nucleoside inhibitors
    • Hopkins, A.L.; Ren, J.; Esnouf, R.M.; Willcox, B.E.; Jones, E.Y.; Ross, C.; Miyasaka, T.; Walker, R.T.; Tanaka, H.; Stammers, D.K.; et al. Complexes of HIV-1 reverse transcriptase with inhibitors of the HEPT series reveal conformational changes relevant to the design of potent non-nucleoside inhibitors. J. Med. Chem. 1996, 39, 1589-1600.
    • (1996) J. Med. Chem , vol.39 , pp. 1589-1600
    • Hopkins, A.L.1    Ren, J.2    Esnouf, R.M.3    Willcox, B.E.4    Jones, E.Y.5    Ross, C.6    Miyasaka, T.7    Walker, R.T.8    Tanaka, H.9    Stammers, D.K.10
  • 69
    • 84864598961 scopus 로고    scopus 로고
    • Wavefunction, Inc.: Irvine, CA, USA
    • Wavefunction, Inc. SPARTAN, version 06; Wavefunction, Inc.: Irvine, CA, USA, 2006.
    • (2006) SPARTAN, Version 06
    • Inc, W.1
  • 70
    • 34249021392 scopus 로고    scopus 로고
    • Linear Interaction Energy (LIE) Models for ligand binding in implicit solvent: Theory and application to the binding of NNRTIs to HIV-1 reverse transcriptase
    • Su, Y.; Gallicchio, E.; Das, K.; Arnold, E.; Levy, R.M. Linear Interaction Energy (LIE) Models for ligand binding in implicit solvent: theory and application to the binding of NNRTIs to HIV-1 reverse transcriptase. J. Chem. Theory Comput. 2007, 3, 256-277.
    • (2007) J. Chem. Theory Comput , vol.3 , pp. 256-277
    • Su, Y.1    Gallicchio, E.2    Das, K.3    Arnold, E.4    Levy, R.M.5
  • 71
    • 12144278681 scopus 로고    scopus 로고
    • HIV-reverse transcriptase inhibition: Inclusion of ligand-induced fit by cross-docking studies
    • DOI 10.1021/jm0493921
    • Ragno, R.; Frasca, S.; Manetti, F.; Brizzi, A.; Massa, S. HIV-reverse transcriptase inhibition: Inclusion of ligand-induced fit by cross-docking studies. J. Med. Chem. 2005, 48, 200-212. (Pubitemid 40109511)
    • (2005) Journal of Medicinal Chemistry , vol.48 , Issue.1 , pp. 200-212
    • Ragno, R.1    Frasca, S.2    Manetti, F.3    Brizzi, A.4    Massa, S.5
  • 72
    • 0036554692 scopus 로고    scopus 로고
    • HEPT derivatives as non-nucleoside inhibitors of HIV-1 reverse trancriptase: QSAR studies agree with the crystal structures
    • DOI 10.1023/A:1020280627193
    • Gáudio, A.C.; Montanari, C.A. HEPT derivatives as non-nucleoside inhibitors of HIV-1 reverse transcriptase: QSAR studies agree with the crystal structures. J. Comput.-Aided Mol. Des. 2002, 16, 287-295. (Pubitemid 35174569)
    • (2002) Journal of Computer-Aided Molecular Design , vol.16 , Issue.4 , pp. 287-295
    • Gaudio, A.C.1    Montanari, C.A.2
  • 74
    • 0034333415 scopus 로고    scopus 로고
    • Structure-based drug design of nonnucleoside inhibitors for wild-type and drug-resistant HIV reverse transcriptase
    • Mao, C.; Sudbeck, E.A.; Venkatachalam, T.K.; Uckun, F.M. Structure-based drug design of nonnucleoside inhibitors for wild-type and drug-resistant HIV reverse transcriptase. Biochem. Pharmacol. 2000, 60, 1251-1265.
    • (2000) Biochem. Pharmacol , vol.60 , pp. 1251-1265
    • Mao, C.1    Sudbeck, E.A.2    Venkatachalam, T.K.3    Uckun, F.M.4
  • 76
    • 84864586359 scopus 로고    scopus 로고
    • Hypercube, Inc.: Gainesville, FL, USA
    • Hypercube, Inc. HyperChem 7.5; Hypercube, Inc.: Gainesville, FL, USA, 2003.
    • (2003) HyperChem 7 , vol.5
    • Inc, H.1
  • 77
    • 34548202874 scopus 로고    scopus 로고
    • Tripos, Inc.: St Louis, MO, USA
    • Tripos, Inc. SYBYL, version 7.2; Tripos, Inc.: St Louis, MO, USA, 2006.
    • (2006) SYBYL, Version 7.2
    • Inc, T.1
  • 79
    • 0035789518 scopus 로고    scopus 로고
    • GROMACS 3.0: A package for molecular simulation and trajectory analysis
    • DOI 10.1007/S008940100045
    • Lindahl, E.; Hess, B.; Spoel, D. GROMACS 30: A package for molecular simulation and trajectory analysis. J. Mol. Mod. 2001, 7, 306-317. (Pubitemid 36153547)
    • (2001) Journal of Molecular Modeling , vol.7 , Issue.8 , pp. 306-317
    • Lindahl, E.1    Hess, B.2    Van Der Spoel, D.3
  • 81
    • 0030158429 scopus 로고    scopus 로고
    • PRODRG, a program for generating molecular topologies and unique molecular descriptors from coordinates of small molecules
    • Aalten, D.M.; Bywater, R.; Findlay, J.B.; Hendlich, M.; Hooft, R.W.; Vriend, G. PRODRG, a program for generating molecular topologies and unique molecular descriptors from coordinates of small molecules. J. Computer.-Aided Mol. Des. 1996, 10, 255-262. (Pubitemid 126712820)
    • (1996) Journal of Computer-Aided Molecular Design , vol.10 , Issue.3 , pp. 255-262
    • Van Aalten, D.M.F.1
  • 82
    • 33846823909 scopus 로고
    • Particle mesh Ewald: An Nlog(N) method for Ewald sums in large systems
    • Darden, T.; York, D.; Pedersen, L. Particle mesh Ewald: An Nlog(N) method for Ewald sums in large systems. J. Chem. Phys. 1993, 98, 10089-10092.
    • (1993) J. Chem. Phys , vol.98 , pp. 10089-10092
    • Darden, T.1    York, D.2    Pedersen, L.3
  • 83
    • 33646940952 scopus 로고    scopus 로고
    • Numerical integration of the Cartesian equations of motion of a system with constraints; Molecular dynamics of n-alkanes
    • Ryckaert, J.P.; Ciccotti, G.; Berendsen, H.J.C. Numerical integration of the Cartesian equations of motion of a system with constraints; molecular dynamics of n-alkanes. J. Comp. Phys. 1997, 23, 327-341.
    • (1997) J. Comp. Phys , vol.23 , pp. 327-341
    • Ryckaert, J.P.1    Ciccotti, G.2    Berendsen, H.J.C.3
  • 84
    • 0029633168 scopus 로고
    • GROMACS: A message passing parallel molecular dynamics implementations
    • Berendsen, H.J.C.; Spoel, D.; Drunen, R. GROMACS: A message passing parallel molecular dynamics implementation. Comp. Phys. Comm. 1995, 91, 43-56.
    • (1995) Comp. Phys. Comm , vol.91 , pp. 43-43
    • Berendsen, H.J.C.1    Spoel, D.2    Drunen, R.3
  • 85
    • 0033219497 scopus 로고    scopus 로고
    • Structure based prediction of binding affinity of human immunodeficiency virus-1 protease inhibitors
    • Kulkarni, S.S.; Kulkarni, V.M. Structure based prediction of binding affinity of human immunodeficiency virus-1 protease inhibitors. J. Chem. Inf. Comput. Sci. 1999, 39, 1128-1140.
    • J. Chem. Inf. Comput. Sci , vol.1999 , Issue.39 , pp. 1128-1140
    • Kulkarni, S.S.1    Kulkarni, V.M.2
  • 86
    • 0033181015 scopus 로고    scopus 로고
    • The effect of inhibitor binding on the structural stability and cooperativity of the HIV-1 protease
    • DOI 10.1002/(SICI)1097-0134(19990801)36:2<147::AID-PROT2>3.0.CO;2-3
    • Todd, M.J.; Freire, E. The effect of inhibitor binding on the structural stability and cooperativity of the HIV-1 protease. Proteins 1999, 36, 147-156. (Pubitemid 29305085)
    • (1999) Proteins: Structure, Function and Genetics , vol.36 , Issue.2 , pp. 147-156
    • Todd, M.J.1    Freire, E.2
  • 87
    • 0031180937 scopus 로고    scopus 로고
    • Prediction of ligand-receptor binding thermodynamics by free energy force field (FEFF) 3D-QSAR analysis: Application to a set of peptidometic renin inhibitors
    • Tokarski, J.S.; Hopfinger, A.J. Prediction of ligand-receptor binding thermodynamics by free energy force field (FEFF) 3D-QSAR analysis: Application to a set of peptidometic renin inhibitors. J. Chem. Inf. Comput. Sci. 1997, 37, 792-811. (Pubitemid 127603594)
    • (1997) Journal of Chemical Information and Computer Sciences , vol.37 , Issue.4 , pp. 792-811
    • Tokarski, J.S.1    Hopfinger, A.J.2
  • 90
    • 0030828787 scopus 로고    scopus 로고
    • QSAR and 3D QSAR in drug design part 2: Applications and problems
    • DOI 10.1016/S1359-6446(97)01084-2, PII S1359644697010842
    • Kubinyi, H. QSAR and 3D-QSAR in Drug Design. Part II: Applications and Problems. Drug Discov. Today 1997, 2, 538-546. (Pubitemid 27512944)
    • (1997) Drug Discovery Today , vol.2 , Issue.12 , pp. 538-546
    • Kubinyi, H.1
  • 91
    • 0028919933 scopus 로고
    • The inhibition of human immunodeficiency virus type 1 in vitro by a non-nucleoside reverse transcriptase inhibitor MKC- 442, alone and in combination with other anti-HIV compounds
    • Brennan, T.M.; Taylor, D.L.; Bridges, C.G.; Leyda, J.P.; Tyms, A.S. The inhibition of human immunodeficiency virus type 1 in vitro by a non-nucleoside reverse transcriptase inhibitor MKC- 442, alone and in combination with other anti-HIV compounds. Antiviral Res. 1995, 26, 173-187.
    • (1995) Antiviral Res , vol.26 , pp. 173-187
    • Brennan, T.M.1    Taylor, D.L.2    Bridges, C.G.3    Leyda, J.P.4    Tyms, A.S.5
  • 92
    • 33646849612 scopus 로고
    • ONIOM-BSSE scheme for H system and applications on HIV-1 reverse transcriptase
    • Kuno, M.; Hongkrengkai, R.; Hannongbua, S. ONIOM-BSSE scheme for H system and applications on HIV-1 reverse transcriptase. Chem. Phys. Lett. 1995, 424, 172-177.
    • (1995) Chem. Phys. Lett , vol.424 , pp. 172-177
    • Kuno, M.1    Hongkrengkai, R.2    Hannongbua, S.3
  • 93
    • 0035897124 scopus 로고    scopus 로고
    • Conformational preferences of non-nucleoside HIV-1 reverse transcriptase inhibitors
    • DOI 10.1016/S0040-4020(01)00193-4, PII S0040402001001934
    • Parreira, R.L.T.; Abrahão-Jr., O.; Galembeck, S.E. Conformational preferences of non-nucleoside HIV-1 reverse transcriptase inhibitors. Tetrahedron 2001, 57, 3243-3253. (Pubitemid 32322576)
    • (2001) Tetrahedron , vol.57 , Issue.16 , pp. 3243-3253
    • Parreira, R.L.T.1    Abrahao Jr., O.2    Galembeck, S.E.3


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