-
1
-
-
0030905238
-
Structure-based thermodynamic analysis of HIV-1 protease inhibitors
-
Bardi JS, Luque I, Freire E. Structure-based thermodynamic analysis of HIV-1 protease inhibitors. Biochemistry 1997;36:6588-6596.
-
(1997)
Biochemistry
, vol.36
, pp. 6588-6596
-
-
Bardi, J.S.1
Luque, I.2
Freire, E.3
-
2
-
-
0032574705
-
The molecular basis of resistance to HIV-1 protease inhibition: A plausible hypothesis
-
Luque I, Todd MJ, Gomez J, Semo N, Freire E. The molecular basis of resistance to HIV-1 protease inhibition: a plausible hypothesis. Biochemistry 1998;37:5791-5797.
-
(1998)
Biochemistry
, vol.37
, pp. 5791-5797
-
-
Luque, I.1
Todd, M.J.2
Gomez, J.3
Semo, N.4
Freire, E.5
-
3
-
-
0032561137
-
The structural stability of the HIV-1 protease
-
Todd M, Semo N, Freire E. The structural stability of the HIV-1 protease. J Mol Biol 1998;283:475-488.
-
(1998)
J Mol Biol
, vol.283
, pp. 475-488
-
-
Todd, M.1
Semo, N.2
Freire, E.3
-
4
-
-
0026344399
-
The three-dimensional structure of the aspartyl protease from the HIV-1 isolate BRU
-
Spinelli S, Liu QZ, Alzari PM, Hirel PH, Poljak RJ. The three-dimensional structure of the aspartyl protease from the HIV-1 isolate BRU. Biochimie 1991;73:1391-1396.
-
(1991)
Biochimie
, vol.73
, pp. 1391-1396
-
-
Spinelli, S.1
Liu, Q.Z.2
Alzari, P.M.3
Hirel, P.H.4
Poljak, R.J.5
-
5
-
-
0026009213
-
Stable submolecular folding units in a non-compact form of cytochrome c
-
Jeng M-F, Englander SW. Stable submolecular folding units in a non-compact form of cytochrome c. J Mol Biol 1991;221:1045-1061.
-
(1991)
J Mol Biol
, vol.221
, pp. 1045-1061
-
-
Jeng, M.-F.1
Englander, S.W.2
-
6
-
-
0026731991
-
Hydrogen exchange in native and denatured states of hen egg-white lysozyme
-
Radford SE, Buck M, Topping KD, Dobson CM, Evans PA. Hydrogen exchange in native and denatured states of hen egg-white lysozyme. Proteins 1992;14:237-248.
-
(1992)
Proteins
, vol.14
, pp. 237-248
-
-
Radford, S.E.1
Buck, M.2
Topping, K.D.3
Dobson, C.M.4
Evans, P.A.5
-
7
-
-
0027384196
-
Hydrogen exchange in unligated and ligated staphylococcal nuclease
-
Loh SN, Prehoda KE, Wang J, Markley JL. Hydrogen exchange in unligated and ligated staphylococcal nuclease. Biochemistry 1993; 32:11022-11028.
-
(1993)
Biochemistry
, vol.32
, pp. 11022-11028
-
-
Loh, S.N.1
Prehoda, K.E.2
Wang, J.3
Markley, J.L.4
-
8
-
-
0027375522
-
Protein internal flexibility and global stability: Effect of urea on hydrogen exchange rates of bovine pancreatic trypsin inhibitor
-
Kim K-S, Woodward C. Protein internal flexibility and global stability: Effect of urea on hydrogen exchange rates of bovine pancreatic trypsin inhibitor. Biochemistry 1993;32:9609-9613.
-
(1993)
Biochemistry
, vol.32
, pp. 9609-9613
-
-
Kim, K.-S.1
Woodward, C.2
-
9
-
-
0027361710
-
Is the slow-exchange core the protein folding core?
-
Woodward C. Is the slow-exchange core the protein folding core? TIBS. 1993;18:359-360.
-
(1993)
TIBS
, vol.18
, pp. 359-360
-
-
Woodward, C.1
-
10
-
-
0030334648
-
An evaluation of the use of hydrogen exchange at equilibrium to probe intermediates on the folding pathway
-
Clarke J, Fersht AR. An evaluation of the use of hydrogen exchange at equilibrium to probe intermediates on the folding pathway. Folding Design 1996;1:243-254.
-
(1996)
Folding Design
, vol.1
, pp. 243-254
-
-
Clarke, J.1
Fersht, A.R.2
-
11
-
-
0030047378
-
Temperature and pH dependences of hydrogen exchange and global stability for ovomucoid third domain
-
Swint-Kruse L, Robertson AD. Temperature and pH dependences of hydrogen exchange and global stability for ovomucoid third domain. Biochemistry. 1996;35:171-180.
-
(1996)
Biochemistry
, vol.35
, pp. 171-180
-
-
Swint-Kruse, L.1
Robertson, A.D.2
-
12
-
-
0029643523
-
Protein folding intermediates: Native-state hydrogen exchange
-
Bai Y, Sosnick TR, Mayne L, Englander SW. Protein folding intermediates: native-state hydrogen exchange. Science. 1995;269: 192-197.
-
(1995)
Science
, vol.269
, pp. 192-197
-
-
Bai, Y.1
Sosnick, T.R.2
Mayne, L.3
Englander, S.W.4
-
13
-
-
0028008617
-
Staphylococcal nuclease folding intermediate charaterized by hydrogen exchange and NMR spectroscopy
-
Jacobs MD, Fox RO. Staphylococcal nuclease folding intermediate charaterized by hydrogen exchange and NMR spectroscopy. Proc Natl Acad Sci USA 1994;91:449-453.
-
(1994)
Proc Natl Acad Sci USA
, vol.91
, pp. 449-453
-
-
Jacobs, M.D.1
Fox, R.O.2
-
14
-
-
0029099221
-
Structural basis of the stability of a lysozyme molten globule
-
Morozova LA, Haynie DT, Arico-Muendel C, Van Dael H, Dobson CM. Structural basis of the stability of a lysozyme molten globule. Nat Struct Biol 1995;2: 871-875.
-
(1995)
Nat Struct Biol
, vol.2
, pp. 871-875
-
-
Morozova, L.A.1
Haynie, D.T.2
Arico-Muendel, C.3
Van Dael, H.4
Dobson, C.M.5
-
15
-
-
0028866620
-
Different subdomains are most protected from hydrogen exchange in the molten globule and native states of human α-lactalbumin
-
Schulman BA, Redfield C, Peng Z, Dobson CM, Kim PS. Different subdomains are most protected from hydrogen exchange in the molten globule and native states of human α-lactalbumin. J Mol Biol 1995;253:651-657.
-
(1995)
J Mol Biol
, vol.253
, pp. 651-657
-
-
Schulman, B.A.1
Redfield, C.2
Peng, Z.3
Dobson, C.M.4
Kim, P.S.5
-
16
-
-
0032544060
-
The structural distribution of cooperative interactions in proteins: Analysis of the native state ensemble
-
Hilser VJ, Dowdy D, Oas TG, Freire E. The structural distribution of cooperative interactions in proteins: analysis of the native state ensemble. Proc Natl Acad Sci USA 1998;95:9903-9908.
-
(1998)
Proc Natl Acad Sci USA
, vol.95
, pp. 9903-9908
-
-
Hilser, V.J.1
Dowdy, D.2
Oas, T.G.3
Freire, E.4
-
17
-
-
0027245801
-
Thermodynamic characterization of the structural stability of the coiled-coil region of the bZIP transcription factor GCN4
-
Thompson K, Vinson C, Freire E. Thermodynamic characterization of the structural stability of the coiled-coil region of the bZIP transcription factor GCN4. Biochemistry 1993;32:5491-5496.
-
(1993)
Biochemistry
, vol.32
, pp. 5491-5496
-
-
Thompson, K.1
Vinson, C.2
Freire, E.3
-
18
-
-
0000465244
-
Structural stability of oligomeric proteins
-
Johnson CR, Freire E. Structural stability of oligomeric proteins. Techniques Protein Chem 1996;VII:459-467.
-
(1996)
Techniques Protein Chem
, vol.7
, pp. 459-467
-
-
Johnson, C.R.1
Freire, E.2
-
20
-
-
0026734102
-
Two-dimensional differential scanning calorimetry: Simultaneous resolution of intrinsic protein structural energetics and ligan binding interactions by global linkage analysis
-
Straume M, Freire E. Two-dimensional differential scanning calorimetry: simultaneous resolution of intrinsic protein structural energetics and ligan binding interactions by global linkage analysis. Anal Biochem 1992;203:259-268.
-
(1992)
Anal Biochem
, vol.203
, pp. 259-268
-
-
Straume, M.1
Freire, E.2
-
21
-
-
0000103534
-
Statistical thermodynamic analysis of the heat capacity function associated with protein folding-unfolding transitions
-
Freire E. Statistical thermodynamic analysis of the heat capacity function associated with protein folding-unfolding transitions. Comments Mol Cell Biophys 1989;6:123-140.
-
(1989)
Comments Mol Cell Biophys
, vol.6
, pp. 123-140
-
-
Freire, E.1
-
22
-
-
0029080864
-
Thermodynamic mapping of the inhibitor site of the aspartic protease endothiapepsin
-
Gomez J, Freire E. Thermodynamic mapping of the inhibitor site of the aspartic protease endothiapepsin. J Mol Biol 1995;252:337-350.
-
(1995)
J Mol Biol
, vol.252
, pp. 337-350
-
-
Gomez, J.1
Freire, E.2
-
23
-
-
0025281866
-
Study of strong to ultralight protein interactions using differential scanning calorimetry
-
Brandts JF, Lin LN. Study of strong to ultralight protein interactions using differential scanning calorimetry. Biochemistry 1990; 29:6927-6940.
-
(1990)
Biochemistry
, vol.29
, pp. 6927-6940
-
-
Brandts, J.F.1
Lin, L.N.2
-
24
-
-
0026756702
-
Thermodynamics of structural stability and cooperative folding behavior in proteins
-
Murphy KP, Freire E. Thermodynamics of structural stability and cooperative folding behavior in proteins. Adv Protein Chem 1992; 43:313-361.
-
(1992)
Adv Protein Chem
, vol.43
, pp. 313-361
-
-
Murphy, Kp.1
Freire, E.2
-
26
-
-
0029957505
-
The enthalpy change in protein folding and binding, refinement of parameters for structure based calculations
-
Hilser VJ, Gomez J, Freire E. The enthalpy change in protein folding and binding, refinement of parameters for structure based calculations. Proteins 1996;26:123-133.
-
(1996)
Proteins
, vol.26
, pp. 123-133
-
-
Hilser, V.J.1
Gomez, J.2
Freire, E.3
-
27
-
-
0027991081
-
Estimation of changes in side chain configurational entropy in binding and folding: General methods and application to helix formation
-
Lee KH, Xie D, Freire E, Amzel LM. Estimation of changes in side chain configurational entropy in binding and folding: general methods and application to helix formation. Proteins 1994;20: 68-84.
-
(1994)
Proteins
, vol.20
, pp. 68-84
-
-
Lee, K.H.1
Xie, D.2
Freire, E.3
Amzel, L.M.4
-
28
-
-
0029900846
-
The magnitude of the backbone conformational entropy change in protein folding
-
DAquino JA et al. The magnitude of the backbone conformational entropy change in protein folding. Proteins. 1996;25:143-156.
-
(1996)
Proteins
, vol.25
, pp. 143-156
-
-
DAquino, J.A.1
-
29
-
-
0029958659
-
Structure based thermodynamic scale of α-helix propensities in amino acids
-
Luque I, Mayorga O, Freire E. Structure based thermodynamic scale of α-helix propensities in amino acids. Biochemistry 1996;35: 13681-13688.
-
(1996)
Biochemistry
, vol.35
, pp. 13681-13688
-
-
Luque, I.1
Mayorga, O.2
Freire, E.3
-
30
-
-
0026787837
-
Use of protein unfolding studies to determine the conformational and dimeric stabilities of HIV-1 and SIV proteases
-
Grant SK et al. Use of protein unfolding studies to determine the conformational and dimeric stabilities of HIV-1 and SIV proteases. Biochemistry 1992;31:9491-9501.
-
(1992)
Biochemistry
, vol.31
, pp. 9491-9501
-
-
Grant, S.K.1
-
31
-
-
0030580089
-
Structure based calculation of the equilibrium folding pathway of proteins. Correlation with hydrogen exchange protection factors
-
Hilser VJ, Freire E. Structure based calculation of the equilibrium folding pathway of proteins. Correlation with hydrogen exchange protection factors. J Mol Biol 1996;262:756-772.
-
(1996)
J Mol Biol
, vol.262
, pp. 756-772
-
-
Hilser, V.J.1
Freire, E.2
-
32
-
-
0029968247
-
Global changes in amide hydrogen exchange rates for a protein antigen in complex with three different antibodies
-
Williams DC, Benjamin DC, Poljak RJ, Rule GS. Global changes in amide hydrogen exchange rates for a protein antigen in complex with three different antibodies. J Mol Biol 1996;257:866-876.
-
(1996)
J Mol Biol
, vol.257
, pp. 866-876
-
-
Williams, D.C.1
Benjamin, D.C.2
Poljak, R.J.3
Rule, G.S.4
-
33
-
-
0031746754
-
The statistical thermodynamic linkage between conformational and binding equilibrium
-
Freire E. The statistical thermodynamic linkage between conformational and binding equilibrium. Adv Protein Chem 1998;51:255-279.
-
(1998)
Adv Protein Chem
, vol.51
, pp. 255-279
-
-
Freire, E.1
-
34
-
-
0030993784
-
Structure-based statistical thermodynamic analysis of t4 lysozyme mutants: Structural mapping of cooperative interactions
-
Hilser VJ, Townsend BD, Freire E. Structure-based statistical thermodynamic analysis of t4 lysozyme mutants: structural mapping of cooperative interactions. Biophysical Chem. 1997;64: 69-79.
-
(1997)
Biophysical Chem.
, vol.64
, pp. 69-79
-
-
Hilser, V.J.1
Townsend, B.D.2
Freire, E.3
-
35
-
-
0031042186
-
Predicting the equilibrium protein folding pathway: Structure-based analysis of staphylococcal nuclease
-
Hilser VJ, Freire E. Predicting the equilibrium protein folding pathway: structure-based analysis of staphylococcal nuclease. Proteins. 1997;27:171-183.
-
(1997)
Proteins
, vol.27
, pp. 171-183
-
-
Hilser, V.J.1
Freire, E.2
-
36
-
-
0028921302
-
Flexibility and function in HIV-1 protease
-
Nicholson LK et al. Flexibility and function in HIV-1 protease. Nat Struct Biol 1995;2:274-280.
-
(1995)
Nat Struct Biol
, vol.2
, pp. 274-280
-
-
Nicholson, L.K.1
-
37
-
-
0028845120
-
Precise scanning calorimeter for studying thermal properties of biological macromolecules in dilute solution
-
Privalov G, Kavina V, Freire E, Privalov PL. Precise scanning calorimeter for studying thermal properties of biological macromolecules in dilute solution. Anal Biochem 1995;232:79-85.
-
(1995)
Anal Biochem
, vol.232
, pp. 79-85
-
-
Privalov, G.1
Kavina, V.2
Freire, E.3
Privalov, P.L.4
-
39
-
-
0000732609
-
GRASP: Graphical representation and analysis of surface properties
-
Nicholls A, Bharadwaj R, Honig B. GRASP: graphical representation and analysis of surface properties. Biophys J 1993;64:166-170.
-
(1993)
Biophys J
, vol.64
, pp. 166-170
-
-
Nicholls, A.1
Bharadwaj, R.2
Honig, B.3
-
40
-
-
0028105957
-
The HIV-1 protease as enzyme and substrate: Mutagenesis of autolysis sites and generation of a stable mutant with retained kinetic properties
-
Mildner AM, Rothrock DJ, Leone JW et al. The HIV-1 protease as enzyme and substrate: mutagenesis of autolysis sites and generation of a stable mutant with retained kinetic properties. Biochemistry 1994;33:9405-9413.
-
(1994)
Biochemistry
, vol.33
, pp. 9405-9413
-
-
Mildner, A.M.1
Rothrock, D.J.2
Leone, J.W.3
|