메뉴 건너뛰기




Volumn 13, Issue 1, 2012, Pages

Pleiotropic functions of catabolite control protein CcpA in Butanol-producing Clostridium acetobutylicum

Author keywords

Acidogenesis and solventogenesis; CcpA; Pleiotropic regulator; Sporulation

Indexed keywords

ARABINOSE; BUTANOL; CARBON; CATABOLITE CONTROL PROTEIN A; DNA; GLUCOSE; PHOSPHOTRANSFERASE; SOLVENT; XYLOSE;

EID: 84864347429     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-13-349     Document Type: Article
Times cited : (55)

References (111)
  • 1
    • 0348109341 scopus 로고    scopus 로고
    • CcpA-dependent carbon catabolite repression in bacteria
    • Warner JB, Lolkema JS. CcpA-dependent carbon catabolite repression in bacteria. Mol Microbiol Biol Rev 2003, 67:475-490.
    • (2003) Mol Microbiol Biol Rev , vol.67 , pp. 475-490
    • Warner, J.B.1    Lolkema, J.S.2
  • 2
    • 0026033650 scopus 로고
    • Catabolite repression of alpha-amylase gene expression in Bacillus subtilis involves a trans-acting gene product homologous to the Escherichia coli lacl and galR repressors
    • 10.1111/j.1365-2958.1991.tb00728.x, 1904524
    • Henkin TM, Grundy FJ, Nicholson WL, Chambliss GH. Catabolite repression of alpha-amylase gene expression in Bacillus subtilis involves a trans-acting gene product homologous to the Escherichia coli lacl and galR repressors. Mol Microbiol 1991, 5:575-584. 10.1111/j.1365-2958.1991.tb00728.x, 1904524.
    • (1991) Mol Microbiol , vol.5 , pp. 575-584
    • Henkin, T.M.1    Grundy, F.J.2    Nicholson, W.L.3    Chambliss, G.H.4
  • 3
    • 0034159917 scopus 로고    scopus 로고
    • Evaluation and characterization of catabolite-responsive elements (cre) of Bacillus subtilis
    • 10.1093/nar/28.5.1206, 102602, 10666464
    • Miwa Y, Nakata A, Ogiwara A, Yamamoto M, Fujita Y. Evaluation and characterization of catabolite-responsive elements (cre) of Bacillus subtilis. Nucleic Acids Res 2000, 28:1206-1210. 10.1093/nar/28.5.1206, 102602, 10666464.
    • (2000) Nucleic Acids Res , vol.28 , pp. 1206-1210
    • Miwa, Y.1    Nakata, A.2    Ogiwara, A.3    Yamamoto, M.4    Fujita, Y.5
  • 4
    • 0033968158 scopus 로고    scopus 로고
    • Regulation of the transport system for C4-dicarboxylic acids in Bacillus subtilis
    • Asai K, Baik SH, Kasahara Y, Moriya S, Ogasawara N. Regulation of the transport system for C4-dicarboxylic acids in Bacillus subtilis. Microbiology 2000, 146(Pt 2):263-271.
    • (2000) Microbiology , vol.146 , Issue.PART 2 , pp. 263-271
    • Asai, K.1    Baik, S.H.2    Kasahara, Y.3    Moriya, S.4    Ogasawara, N.5
  • 5
    • 0345633540 scopus 로고    scopus 로고
    • Role of CcpA in regulation of the central pathways of carbon catabolism in Bacillus subtilis
    • 94174, 10559165
    • Tobisch S, Zuhlke D, Bernhardt J, Stulke J, Hecker M. Role of CcpA in regulation of the central pathways of carbon catabolism in Bacillus subtilis. J Bacteriol 1999, 181:6996-7004. 94174, 10559165.
    • (1999) J Bacteriol , vol.181 , pp. 6996-7004
    • Tobisch, S.1    Zuhlke, D.2    Bernhardt, J.3    Stulke, J.4    Hecker, M.5
  • 6
    • 0036065304 scopus 로고    scopus 로고
    • Control of the glycolytic gapA operon by the catabolite control protein A in Bacillus subtilis: a novel mechanism of CcpA-mediated regulation
    • 10.1046/j.1365-2958.2002.03034.x, 12123463
    • Ludwig H, Rebhan N, Blencke HM, Merzbacher M, Stulke J. Control of the glycolytic gapA operon by the catabolite control protein A in Bacillus subtilis: a novel mechanism of CcpA-mediated regulation. Mol Microbiol 2002, 45:543-553. 10.1046/j.1365-2958.2002.03034.x, 12123463.
    • (2002) Mol Microbiol , vol.45 , pp. 543-553
    • Ludwig, H.1    Rebhan, N.2    Blencke, H.M.3    Merzbacher, M.4    Stulke, J.5
  • 7
    • 0142106372 scopus 로고    scopus 로고
    • The regulatory link between carbon and nitrogen metabolism in Bacillus subtilis: regulation of the gltAB operon by the catabolite control protein CcpA
    • 10.1099/mic.0.26479-0, 14523131
    • Wacker I, Ludwig H, Reif I, Blencke HM, Detsch C, Stulke J. The regulatory link between carbon and nitrogen metabolism in Bacillus subtilis: regulation of the gltAB operon by the catabolite control protein CcpA. Microbiology 2003, 149:3001-3009. 10.1099/mic.0.26479-0, 14523131.
    • (2003) Microbiology , vol.149 , pp. 3001-3009
    • Wacker, I.1    Ludwig, H.2    Reif, I.3    Blencke, H.M.4    Detsch, C.5    Stulke, J.6
  • 8
    • 2442669092 scopus 로고    scopus 로고
    • CcpA-dependent regulation of Bacillus subtilis glutamate dehydrogenase gene expression
    • 10.1128/JB.186.11.3392-3398.2004, 415767, 15150224
    • Belitsky BR, Kim HJ, Sonenshein AL. CcpA-dependent regulation of Bacillus subtilis glutamate dehydrogenase gene expression. J Bacteriol 2004, 186:3392-3398. 10.1128/JB.186.11.3392-3398.2004, 415767, 15150224.
    • (2004) J Bacteriol , vol.186 , pp. 3392-3398
    • Belitsky, B.R.1    Kim, H.J.2    Sonenshein, A.L.3
  • 9
    • 0025953332 scopus 로고
    • Catabolite repression of the operon for xylose utilization from Bacillus subtilis W23 is mediated at the level of transcription and depends on a cis site in the xylA reading frame
    • 10.1007/BF00272155, 1921970
    • Jacob S, Allmansberger R, Gärtner D, Hillen W. Catabolite repression of the operon for xylose utilization from Bacillus subtilis W23 is mediated at the level of transcription and depends on a cis site in the xylA reading frame. Mol Gen Genet 1991, 229:189-196. 10.1007/BF00272155, 1921970.
    • (1991) Mol Gen Genet , vol.229 , pp. 189-196
    • Jacob, S.1    Allmansberger, R.2    Gärtner, D.3    Hillen, W.4
  • 10
    • 0141480274 scopus 로고    scopus 로고
    • Distinct molecular mechanisms involved in carbon catabolite repression of the arabinose regulon in Bacillus subtilis
    • 10.1099/mic.0.26326-0, 12949161
    • Inacio JM, Costa C, de Sa-Nogueira I. Distinct molecular mechanisms involved in carbon catabolite repression of the arabinose regulon in Bacillus subtilis. Microbiology 2003, 149:2345-2355. 10.1099/mic.0.26326-0, 12949161.
    • (2003) Microbiology , vol.149 , pp. 2345-2355
    • Inacio, J.M.1    Costa, C.2    de Sa-Nogueira, I.3
  • 11
    • 77955660471 scopus 로고    scopus 로고
    • Identification and inactivation of pleiotropic regulator CcpA to eliminate glucose repression of xylose utilization in Clostridium acetobutylicum
    • 10.1016/j.ymben.2010.05.002, 20478391
    • Ren C, Gu Y, Hu S, Wu Y, Wang P, Yang Y, Yang C, Yang S, Jiang W. Identification and inactivation of pleiotropic regulator CcpA to eliminate glucose repression of xylose utilization in Clostridium acetobutylicum. Metab Eng 2010, 12:446-454. 10.1016/j.ymben.2010.05.002, 20478391.
    • (2010) Metab Eng , vol.12 , pp. 446-454
    • Ren, C.1    Gu, Y.2    Hu, S.3    Wu, Y.4    Wang, P.5    Yang, Y.6    Yang, C.7    Yang, S.8    Jiang, W.9
  • 12
    • 3843055670 scopus 로고    scopus 로고
    • The CcpA protein is necessary for efficient sporulation and enterotoxin gene (cpe) regulation in Clostridium perfringens
    • 10.1128/JB.186.16.5221-5229.2004, 490932, 15292123
    • Varga J, Stirewalt VL, Melville SB. The CcpA protein is necessary for efficient sporulation and enterotoxin gene (cpe) regulation in Clostridium perfringens. J Bacteriol 2004, 186:5221-5229. 10.1128/JB.186.16.5221-5229.2004, 490932, 15292123.
    • (2004) J Bacteriol , vol.186 , pp. 5221-5229
    • Varga, J.1    Stirewalt, V.L.2    Melville, S.B.3
  • 13
    • 55849149011 scopus 로고    scopus 로고
    • Type IV pili and the CcpA protein are needed for maximal biofilm formation by the gram-positive anaerobic pathogen Clostridium perfringens
    • 10.1128/IAI.00692-08, 2573335, 18765726
    • Varga JJ, Therit B, Melville SB. Type IV pili and the CcpA protein are needed for maximal biofilm formation by the gram-positive anaerobic pathogen Clostridium perfringens. Infect Immun 2008, 76:4944-4951. 10.1128/IAI.00692-08, 2573335, 18765726.
    • (2008) Infect Immun , vol.76 , pp. 4944-4951
    • Varga, J.J.1    Therit, B.2    Melville, S.B.3
  • 14
    • 37549016760 scopus 로고    scopus 로고
    • Carbon catabolite repression of type IV pilus-dependent gliding motility in the anaerobic pathogen Clostridium perfringens
    • 10.1128/JB.01407-07, 2223757, 17981974
    • Mendez M, Huang IH, Ohtani K, Grau R, Shimizu T, Sarker MR. Carbon catabolite repression of type IV pilus-dependent gliding motility in the anaerobic pathogen Clostridium perfringens. J Bacteriol 2008, 190:48-60. 10.1128/JB.01407-07, 2223757, 17981974.
    • (2008) J Bacteriol , vol.190 , pp. 48-60
    • Mendez, M.1    Huang, I.H.2    Ohtani, K.3    Grau, R.4    Shimizu, T.5    Sarker, M.R.6
  • 15
    • 79551662947 scopus 로고    scopus 로고
    • CcpA-mediated repression of Clostridium difficile toxin gene expression
    • 10.1111/j.1365-2958.2010.07495.x, 21299645
    • Antunes A, Martin-Verstraete I, Dupuy B. CcpA-mediated repression of Clostridium difficile toxin gene expression. Mol Microbiol 2011, 79:882-899. 10.1111/j.1365-2958.2010.07495.x, 21299645.
    • (2011) Mol Microbiol , vol.79 , pp. 882-899
    • Antunes, A.1    Martin-Verstraete, I.2    Dupuy, B.3
  • 16
    • 41349120749 scopus 로고    scopus 로고
    • Fermentative butanol production: bulk chemical and biofuel
    • 10.1196/annals.1419.009, 18378605
    • Durre P. Fermentative butanol production: bulk chemical and biofuel. Ann N Y Acad Sci 2008, 1125:353-362. 10.1196/annals.1419.009, 18378605.
    • (2008) Ann N Y Acad Sci , vol.1125 , pp. 353-362
    • Durre, P.1
  • 17
    • 0022970603 scopus 로고
    • Acetone-butanol fermentation revisited
    • 373084, 3540574
    • Jones DT, Woods DR. Acetone-butanol fermentation revisited. Microbiol Rev 1986, 50:484-524. 373084, 3540574.
    • (1986) Microbiol Rev , vol.50 , pp. 484-524
    • Jones, D.T.1    Woods, D.R.2
  • 18
    • 80052625837 scopus 로고    scopus 로고
    • Metabolic engineering of Clostridium acetobutylicum: recent advances to improve butanol production
    • 10.1016/j.copbio.2011.01.011, 21377350
    • Lutke-Eversloh T, Bahl H. Metabolic engineering of Clostridium acetobutylicum: recent advances to improve butanol production. Curr Opin Biotechnol 2011, 22:634-647. 10.1016/j.copbio.2011.01.011, 21377350.
    • (2011) Curr Opin Biotechnol , vol.22 , pp. 634-647
    • Lutke-Eversloh, T.1    Bahl, H.2
  • 19
    • 53049086510 scopus 로고    scopus 로고
    • Engineering solventogenic clostridia
    • 10.1016/j.copbio.2008.08.003, 18760360
    • Papoutsakis ET. Engineering solventogenic clostridia. Curr Opin Biotechnol 2008, 19:420-429. 10.1016/j.copbio.2008.08.003, 18760360.
    • (2008) Curr Opin Biotechnol , vol.19 , pp. 420-429
    • Papoutsakis, E.T.1
  • 20
    • 38149030843 scopus 로고    scopus 로고
    • Biobutanol: an attractive biofuel
    • 10.1002/biot.200700168, 17924389
    • Durre P. Biobutanol: an attractive biofuel. Biotechnol J 2007, 2:1525-1534. 10.1002/biot.200700168, 17924389.
    • (2007) Biotechnol J , vol.2 , pp. 1525-1534
    • Durre, P.1
  • 21
    • 0034902930 scopus 로고    scopus 로고
    • Genome sequence and comparative analysis of the solvent-producing bacterium Clostridium acetobutylicum
    • 10.1128/JB.183.16.4823-4838.2001, 99537, 11466286
    • Nolling J, Breton G, Omelchenko MV, Makarova KS, Zeng Q, Gibson R, Lee HM, Dubois J, Qiu D, Hitti J, et al. Genome sequence and comparative analysis of the solvent-producing bacterium Clostridium acetobutylicum. J Bacteriol 2001, 183:4823-4838. 10.1128/JB.183.16.4823-4838.2001, 99537, 11466286.
    • (2001) J Bacteriol , vol.183 , pp. 4823-4838
    • Nolling, J.1    Breton, G.2    Omelchenko, M.V.3    Makarova, K.S.4    Zeng, Q.5    Gibson, R.6    Lee, H.M.7    Dubois, J.8    Qiu, D.9    Hitti, J.10
  • 22
    • 0344197722 scopus 로고    scopus 로고
    • Analysis of the elements of catabolite repression in Clostridium acetobutylicum ATCC 824
    • 10.1159/000073403, 14593248
    • Tangney M, Galinier A, Deutscher J, Mitchell WJ. Analysis of the elements of catabolite repression in Clostridium acetobutylicum ATCC 824. J Mol Microbiol Biotechnol 2003, 6:6-11. 10.1159/000073403, 14593248.
    • (2003) J Mol Microbiol Biotechnol , vol.6 , pp. 6-11
    • Tangney, M.1    Galinier, A.2    Deutscher, J.3    Mitchell, W.J.4
  • 23
    • 68049142960 scopus 로고    scopus 로고
    • Disruption of the acetoacetate decarboxylase gene in solvent-producing Clostridium acetobutylicum increases the butanol ratio
    • 10.1016/j.ymben.2009.06.002, 19560551
    • Jiang Y, Xu C, Dong F, Yang Y, Jiang W, Yang S. Disruption of the acetoacetate decarboxylase gene in solvent-producing Clostridium acetobutylicum increases the butanol ratio. Metab Eng 2009, 11:284-291. 10.1016/j.ymben.2009.06.002, 19560551.
    • (2009) Metab Eng , vol.11 , pp. 284-291
    • Jiang, Y.1    Xu, C.2    Dong, F.3    Yang, Y.4    Jiang, W.5    Yang, S.6
  • 24
    • 70449575862 scopus 로고    scopus 로고
    • Metabolic engineering of Clostridium acetobutylicum M5 for highly selective butanol production
    • 10.1002/biot.200900142, 19830716
    • Lee JY, Jang YS, Lee J, Papoutsakis ET, Lee SY. Metabolic engineering of Clostridium acetobutylicum M5 for highly selective butanol production. Biotechnol J 2009, 4:1432-1440. 10.1002/biot.200900142, 19830716.
    • (2009) Biotechnol J , vol.4 , pp. 1432-1440
    • Lee, J.Y.1    Jang, Y.S.2    Lee, J.3    Papoutsakis, E.T.4    Lee, S.Y.5
  • 25
    • 34249981232 scopus 로고    scopus 로고
    • Bioproduction of butanol from biomass: from genes to bioreactors
    • 10.1016/j.copbio.2007.04.002, 17462877
    • Ezeji TC, Qureshi N, Blaschek HP. Bioproduction of butanol from biomass: from genes to bioreactors. Curr Opin Biotechnol 2007, 18:220-227. 10.1016/j.copbio.2007.04.002, 17462877.
    • (2007) Curr Opin Biotechnol , vol.18 , pp. 220-227
    • Ezeji, T.C.1    Qureshi, N.2    Blaschek, H.P.3
  • 26
    • 0033997765 scopus 로고    scopus 로고
    • The economics of acetone-butanol fermentation: theoretical and market considerations
    • Gapes JR. The economics of acetone-butanol fermentation: theoretical and market considerations. J Mol Microbiol Biotechnol 2000, 2:27-32.
    • (2000) J Mol Microbiol Biotechnol , vol.2 , pp. 27-32
    • Gapes, J.R.1
  • 27
    • 47549110972 scopus 로고    scopus 로고
    • Carbon catabolite repression in bacteria: many ways to make the most out of nutrients
    • 10.1038/nrmicro1932, 18628769
    • Goerke B, Stulke J. Carbon catabolite repression in bacteria: many ways to make the most out of nutrients. Nat Rev Microbiol 2008, 6:613-624. 10.1038/nrmicro1932, 18628769.
    • (2008) Nat Rev Microbiol , vol.6 , pp. 613-624
    • Goerke, B.1    Stulke, J.2
  • 28
    • 65249173472 scopus 로고    scopus 로고
    • Carbon Catabolite Control of the Metabolic Network in Bacillus subtilis
    • 10.1271/bbb.80479, 19202299
    • Fujita Y. Carbon Catabolite Control of the Metabolic Network in Bacillus subtilis. Biosci Biotechnol Biochem 2009, 73:245-259. 10.1271/bbb.80479, 19202299.
    • (2009) Biosci Biotechnol Biochem , vol.73 , pp. 245-259
    • Fujita, Y.1
  • 29
    • 0036306051 scopus 로고    scopus 로고
    • Quantification of the influence of HPrSer46P on CcpA-cre interaction
    • 10.1016/S0022-2836(02)00245-0, 12051938
    • Aung-Hilbrich LM, Seidel G, Wagner A, Hillen W. Quantification of the influence of HPrSer46P on CcpA-cre interaction. J Mol Biol 2002, 319:77-85. 10.1016/S0022-2836(02)00245-0, 12051938.
    • (2002) J Mol Biol , vol.319 , pp. 77-85
    • Aung-Hilbrich, L.M.1    Seidel, G.2    Wagner, A.3    Hillen, W.4
  • 30
    • 34547876110 scopus 로고    scopus 로고
    • A phylogenetic Gibbs sampler that yields centroid solutions for cis-regulatory site prediction
    • 10.1093/bioinformatics/btm241, 2268014, 17488758
    • Newberg LA, Thompson WA, Conlan S, Smith TM, McCue LA, Lawrence CE. A phylogenetic Gibbs sampler that yields centroid solutions for cis-regulatory site prediction. Bioinformatics 2007, 23:1718-1727. 10.1093/bioinformatics/btm241, 2268014, 17488758.
    • (2007) Bioinformatics , vol.23 , pp. 1718-1727
    • Newberg, L.A.1    Thompson, W.A.2    Conlan, S.3    Smith, T.M.4    McCue, L.A.5    Lawrence, C.E.6
  • 31
    • 0029937428 scopus 로고    scopus 로고
    • Hidden Markov models
    • 10.1016/S0959-440X(96)80056-X, 8804822
    • Eddy SR. Hidden Markov models. Curr Opin Struct Biol 1996, 6:361-365. 10.1016/S0959-440X(96)80056-X, 8804822.
    • (1996) Curr Opin Struct Biol , vol.6 , pp. 361-365
    • Eddy, S.R.1
  • 33
    • 0035404452 scopus 로고    scopus 로고
    • The functional ccpA gene is required for carbon catabolite repression in Lactobacillus plantarum
    • 10.1128/AEM.67.7.2903-2907.2001, 92959, 11425700
    • Muscariello L, Marasco R, De Felice M, Sacco M. The functional ccpA gene is required for carbon catabolite repression in Lactobacillus plantarum. Appl Environ Microbiol 2001, 67:2903-2907. 10.1128/AEM.67.7.2903-2907.2001, 92959, 11425700.
    • (2001) Appl Environ Microbiol , vol.67 , pp. 2903-2907
    • Muscariello, L.1    Marasco, R.2    De Felice, M.3    Sacco, M.4
  • 34
    • 0033986506 scopus 로고    scopus 로고
    • Carbon catabolite repression in Lactobacillus pentosus: analysis of the ccpA region
    • 10.1128/AEM.66.1.277-283.2000, 91818, 10618236
    • Mahr K, Hillen W, Titgemeyer F. Carbon catabolite repression in Lactobacillus pentosus: analysis of the ccpA region. Appl Environ Microbiol 2000, 66:277-283. 10.1128/AEM.66.1.277-283.2000, 91818, 10618236.
    • (2000) Appl Environ Microbiol , vol.66 , pp. 277-283
    • Mahr, K.1    Hillen, W.2    Titgemeyer, F.3
  • 35
    • 33947425225 scopus 로고    scopus 로고
    • Analysis of the Mechanism and Regulation of Lactose Transport and Metabolism in Clostridium acetobutylicum ATCC 824
    • 10.1128/AEM.02082-06, 1828815, 17209069
    • Yu Y, Tangney M, Aass HC, Mitchell WJ. Analysis of the Mechanism and Regulation of Lactose Transport and Metabolism in Clostridium acetobutylicum ATCC 824. Appl Environ Microbiol 2007, 73:1842-1850. 10.1128/AEM.02082-06, 1828815, 17209069.
    • (2007) Appl Environ Microbiol , vol.73 , pp. 1842-1850
    • Yu, Y.1    Tangney, M.2    Aass, H.C.3    Mitchell, W.J.4
  • 36
    • 0034003163 scopus 로고    scopus 로고
    • Analysis of a catabolic operon for sucrose transport and metabolism in Clostridium acetobutylicum ATCC 824
    • Tangney M, Mitchell WJ. Analysis of a catabolic operon for sucrose transport and metabolism in Clostridium acetobutylicum ATCC 824. J Mol Microbiol Biotechnol 2000, 2:71-80.
    • (2000) J Mol Microbiol Biotechnol , vol.2 , pp. 71-80
    • Tangney, M.1    Mitchell, W.J.2
  • 37
    • 78049506965 scopus 로고    scopus 로고
    • Transcriptional analysis of differential carbohydrate utilization by Clostridium acetobutylicum
    • 10.1099/mic.0.037085-0, 20656779
    • Servinsky MD, Kiel JT, Dupuy NF, Sund CJ. Transcriptional analysis of differential carbohydrate utilization by Clostridium acetobutylicum. Microbiology 2010, 156:3478-3491. 10.1099/mic.0.037085-0, 20656779.
    • (2010) Microbiology , vol.156 , pp. 3478-3491
    • Servinsky, M.D.1    Kiel, J.T.2    Dupuy, N.F.3    Sund, C.J.4
  • 38
    • 79952145912 scopus 로고    scopus 로고
    • Resolving the TCA cycle and pentose-phosphate pathway of Clostridium acetobutylicum ATCC 824: Isotopomer analysis, in vitro activities and expression analysis
    • 10.1002/biot.201000282, 21370473
    • Crown SB, Indurthi DC, Ahn WS, Choi J, Papoutsakis ET, Antoniewicz MR. Resolving the TCA cycle and pentose-phosphate pathway of Clostridium acetobutylicum ATCC 824: Isotopomer analysis, in vitro activities and expression analysis. Biotechnol J 2011, 6:300-305. 10.1002/biot.201000282, 21370473.
    • (2011) Biotechnol J , vol.6 , pp. 300-305
    • Crown, S.B.1    Indurthi, D.C.2    Ahn, W.S.3    Choi, J.4    Papoutsakis, E.T.5    Antoniewicz, M.R.6
  • 39
    • 83055188821 scopus 로고    scopus 로고
    • Metabolome remodeling during the acidogenic-solventogenic transition in Clostridium acetobutylicum
    • 10.1128/AEM.05374-11, 3209008, 21948824
    • Amador-Noguez D, Brasg IA, Feng XJ, Roquet N, Rabinowitz JD. Metabolome remodeling during the acidogenic-solventogenic transition in Clostridium acetobutylicum. Appl Environ Microbiol 2011, 77:7984-7997. 10.1128/AEM.05374-11, 3209008, 21948824.
    • (2011) Appl Environ Microbiol , vol.77 , pp. 7984-7997
    • Amador-Noguez, D.1    Brasg, I.A.2    Feng, X.J.3    Roquet, N.4    Rabinowitz, J.D.5
  • 40
    • 58149200939 scopus 로고    scopus 로고
    • DOOR: a database for prokaryotic operons
    • 10.1093/nar/gkn757, 2686520, 18988623
    • Mao F, Dam P, Chou J, Olman V, Xu Y. DOOR: a database for prokaryotic operons. Nucleic Acids Res 2009, 37:D459-463. 10.1093/nar/gkn757, 2686520, 18988623.
    • (2009) Nucleic Acids Res , vol.37
    • Mao, F.1    Dam, P.2    Chou, J.3    Olman, V.4    Xu, Y.5
  • 41
    • 33846668510 scopus 로고    scopus 로고
    • Operon prediction using both genome-specific and general genomic information
    • 1802555, 17170009
    • Dam P, Olman V, Harris K, Su ZC, Xu Y. Operon prediction using both genome-specific and general genomic information. Nucleic Acids Res 2007, 35:288-298. 1802555, 17170009.
    • (2007) Nucleic Acids Res , vol.35 , pp. 288-298
    • Dam, P.1    Olman, V.2    Harris, K.3    Su, Z.C.4    Xu, Y.5
  • 42
    • 0346462988 scopus 로고    scopus 로고
    • Genes malh and pagl of Clostridium acetobutylicum ATCC 824 encode NAD + - and Mn2 + -dependent phospho-alpha-glucosidase(s)
    • Thompson J, Hess S, Pikis A. Genes malh and pagl of Clostridium acetobutylicum ATCC 824 encode NAD + - and Mn2 + -dependent phospho-alpha-glucosidase(s). J Biol Chem 2004, 279:1553-1561.
    • (2004) J Biol Chem , vol.279 , pp. 1553-1561
    • Thompson, J.1    Hess, S.2    Pikis, A.3
  • 43
    • 77951026835 scopus 로고    scopus 로고
    • Reconstruction of xylose utilization pathway and regulons in Firmicutes
    • 10.1186/1471-2164-11-255, 2873477, 20406496
    • Gu Y, Ding Y, Ren C, Sun Z, Rodionov DA, Zhang W, Yang S, Yang C, Jiang W. Reconstruction of xylose utilization pathway and regulons in Firmicutes. BMC Genomics 2010, 11:255. 10.1186/1471-2164-11-255, 2873477, 20406496.
    • (2010) BMC Genomics , vol.11 , pp. 255
    • Gu, Y.1    Ding, Y.2    Ren, C.3    Sun, Z.4    Rodionov, D.A.5    Zhang, W.6    Yang, S.7    Yang, C.8    Jiang, W.9
  • 44
    • 84863265097 scopus 로고    scopus 로고
    • Ribulokinase and transcriptional regulation of arabinose metabolism in Clostridium acetobutylicum
    • 10.1128/JB.06241-11, 3294803, 22194461
    • Zhang L, Leyn SA, Gu Y, Jiang W, Rodionov DA, Yang C. Ribulokinase and transcriptional regulation of arabinose metabolism in Clostridium acetobutylicum. J Bacteriol 2012, 194:1055-1064. 10.1128/JB.06241-11, 3294803, 22194461.
    • (2012) J Bacteriol , vol.194 , pp. 1055-1064
    • Zhang, L.1    Leyn, S.A.2    Gu, Y.3    Jiang, W.4    Rodionov, D.A.5    Yang, C.6
  • 47
    • 33846817518 scopus 로고    scopus 로고
    • Characterisation of a glucose phosphotransferase system in Clostridium acetobutylicum ATCC 824
    • 10.1007/s00253-006-0679-9, 17096120
    • Tangney M, Mitchell WJ. Characterisation of a glucose phosphotransferase system in Clostridium acetobutylicum ATCC 824. Appl Microbiol Biotechnol 2007, 74:398-405. 10.1007/s00253-006-0679-9, 17096120.
    • (2007) Appl Microbiol Biotechnol , vol.74 , pp. 398-405
    • Tangney, M.1    Mitchell, W.J.2
  • 48
    • 83055184898 scopus 로고    scopus 로고
    • Confirmation and elimination of xylose-metabolic bottlenecks in glucose-PTS-deficient Clostridium acetobutylicum to realize simultaneous utilization of glucose, xylose and arabinose
    • 10.1128/AEM.00644-11, 3208996, 21926197
    • Xiao H, Gu Y, Ning Y, Yang Y, Mitchell WJ, Jiang W, Yang S. Confirmation and elimination of xylose-metabolic bottlenecks in glucose-PTS-deficient Clostridium acetobutylicum to realize simultaneous utilization of glucose, xylose and arabinose. Appl Environ Microbiol 2011, 77:7886-7895. 10.1128/AEM.00644-11, 3208996, 21926197.
    • (2011) Appl Environ Microbiol , vol.77 , pp. 7886-7895
    • Xiao, H.1    Gu, Y.2    Ning, Y.3    Yang, Y.4    Mitchell, W.J.5    Jiang, W.6    Yang, S.7
  • 49
    • 0034911540 scopus 로고    scopus 로고
    • Use of catabolite repression mutants for fermentation of sugar mixtures to ethanol
    • 10.1007/s002530100628, 11499918
    • Nichols NN, Dien BS, Bothast RJ. Use of catabolite repression mutants for fermentation of sugar mixtures to ethanol. Appl Microbiol Biotechnol 2001, 56:120-125. 10.1007/s002530100628, 11499918.
    • (2001) Appl Microbiol Biotechnol , vol.56 , pp. 120-125
    • Nichols, N.N.1    Dien, B.S.2    Bothast, R.J.3
  • 50
    • 0038267065 scopus 로고    scopus 로고
    • Transcriptional profiling of gene expression in response to glucose in Bacillus subtilis: regulation of the central metabolic pathways
    • 10.1016/S1096-7176(03)00009-0, 12850135
    • Blencke HM, Homuth G, Ludwig H, Mader U, Hecker M, Stulke J. Transcriptional profiling of gene expression in response to glucose in Bacillus subtilis: regulation of the central metabolic pathways. Metab Eng 2003, 5:133-149. 10.1016/S1096-7176(03)00009-0, 12850135.
    • (2003) Metab Eng , vol.5 , pp. 133-149
    • Blencke, H.M.1    Homuth, G.2    Ludwig, H.3    Mader, U.4    Hecker, M.5    Stulke, J.6
  • 51
    • 3042565140 scopus 로고    scopus 로고
    • Transcriptional organization of the Clostridium acetobutylicum genome
    • 10.1093/nar/gkh509, 390361, 15060177
    • Paredes CJ, Rigoutsos I, Papoutsakis ET. Transcriptional organization of the Clostridium acetobutylicum genome. Nucleic Acids Res 2004, 32:1973-1981. 10.1093/nar/gkh509, 390361, 15060177.
    • (2004) Nucleic Acids Res , vol.32 , pp. 1973-1981
    • Paredes, C.J.1    Rigoutsos, I.2    Papoutsakis, E.T.3
  • 52
    • 0026089203 scopus 로고
    • Purification and characterization of the extracellular alpha-amylase from Clostridium acetobutylicum ATCC 824
    • 182687, 8967771
    • Paquet V, Croux C, Goma G, Soucaille P. Purification and characterization of the extracellular alpha-amylase from Clostridium acetobutylicum ATCC 824. Appl Environ Microbiol 1991, 57:212-218. 182687, 8967771.
    • (1991) Appl Environ Microbiol , vol.57 , pp. 212-218
    • Paquet, V.1    Croux, C.2    Goma, G.3    Soucaille, P.4
  • 53
    • 0037161217 scopus 로고    scopus 로고
    • AmyP, a reporter gene to study strain degeneration in Clostridium acetobutylicum ATCC 824
    • Sabathe F, Croux C, Cornillot E, Soucaille P. amyP, a reporter gene to study strain degeneration in Clostridium acetobutylicum ATCC 824. FEMS Microbiol Lett 2002, 210:93-98.
    • (2002) FEMS Microbiol Lett , vol.210 , pp. 93-98
    • Sabathe, F.1    Croux, C.2    Cornillot, E.3    Soucaille, P.4
  • 54
    • 0033167973 scopus 로고    scopus 로고
    • The cellulosome concept as an efficient microbial strategy for the degradation of insoluble polysaccharides
    • 10.1016/S0966-842X(99)01533-4, 10390637
    • Shoham Y, Lamed R, Bayer EA. The cellulosome concept as an efficient microbial strategy for the degradation of insoluble polysaccharides. Trends Microbiol 1999, 7:275-281. 10.1016/S0966-842X(99)01533-4, 10390637.
    • (1999) Trends Microbiol , vol.7 , pp. 275-281
    • Shoham, Y.1    Lamed, R.2    Bayer, E.A.3
  • 55
    • 0037137211 scopus 로고    scopus 로고
    • Characterization of the cellulolytic complex (cellulosome) of Clostridium acetobutylicum
    • 10.1111/j.1574-6968.2002.tb11450.x, 12445640
    • Sabathe F, Belaich A, Soucaille P. Characterization of the cellulolytic complex (cellulosome) of Clostridium acetobutylicum. FEMS Microbiol Lett 2002, 217:15-22. 10.1111/j.1574-6968.2002.tb11450.x, 12445640.
    • (2002) FEMS Microbiol Lett , vol.217 , pp. 15-22
    • Sabathe, F.1    Belaich, A.2    Soucaille, P.3
  • 56
    • 0022409935 scopus 로고
    • Xylanolytic Activity of Clostridium acetobutylicum
    • 291795, 16346904
    • Lee SF, Forsberg CW, Gibbins LN. Xylanolytic Activity of Clostridium acetobutylicum. Appl Environ Microbiol 1985, 50:1068-1076. 291795, 16346904.
    • (1985) Appl Environ Microbiol , vol.50 , pp. 1068-1076
    • Lee, S.F.1    Forsberg, C.W.2    Gibbins, L.N.3
  • 57
    • 0035910178 scopus 로고    scopus 로고
    • Transcriptional regulation of pentose utilisation systems in the Bacillus/Clostridium group of bacteria
    • 10.1111/j.1574-6968.2001.tb10965.x, 11750820
    • Rodionov DA, Mironov AA, Gelfand MS. Transcriptional regulation of pentose utilisation systems in the Bacillus/Clostridium group of bacteria. FEMS Microbiol Lett 2001, 205:305-314. 10.1111/j.1574-6968.2001.tb10965.x, 11750820.
    • (2001) FEMS Microbiol Lett , vol.205 , pp. 305-314
    • Rodionov, D.A.1    Mironov, A.A.2    Gelfand, M.S.3
  • 58
    • 0032810168 scopus 로고    scopus 로고
    • Mode of action of AraR, the key regulator of L-arabinose metabolism in Bacillus subtilis
    • 10.1046/j.1365-2958.1999.01484.x, 10417639
    • Mota LJ, Tavares P, Sa-Nogueira I. Mode of action of AraR, the key regulator of L-arabinose metabolism in Bacillus subtilis. Mol Microbiol 1999, 33:476-489. 10.1046/j.1365-2958.1999.01484.x, 10417639.
    • (1999) Mol Microbiol , vol.33 , pp. 476-489
    • Mota, L.J.1    Tavares, P.2    Sa-Nogueira, I.3
  • 59
    • 26444483354 scopus 로고    scopus 로고
    • Transcriptional program of early sporulation and stationary-phase events in Clostridium acetobutylicum
    • 10.1128/JB.187.20.7103-7118.2005, 1251621, 16199581
    • Alsaker KV, Papoutsakis ET. Transcriptional program of early sporulation and stationary-phase events in Clostridium acetobutylicum. J Bacteriol 2005, 187:7103-7118. 10.1128/JB.187.20.7103-7118.2005, 1251621, 16199581.
    • (2005) J Bacteriol , vol.187 , pp. 7103-7118
    • Alsaker, K.V.1    Papoutsakis, E.T.2
  • 60
    • 78650924319 scopus 로고    scopus 로고
    • Genome-Wide Gene Expression Analysis of the Switch between Acidogenesis and Solventogenesis in Continuous Cultures of Clostridium acetobutylicum
    • 10.1159/000320973, 21212688
    • Grimmler C, Janssen H, Kraubetae D, Fischer RJ, Bahl H, Durre P, Liebl W, Ehrenreich A. Genome-Wide Gene Expression Analysis of the Switch between Acidogenesis and Solventogenesis in Continuous Cultures of Clostridium acetobutylicum. J Mol Microbiol Biotechnol 2011, 20:1-15. 10.1159/000320973, 21212688.
    • (2011) J Mol Microbiol Biotechnol , vol.20 , pp. 1-15
    • Grimmler, C.1    Janssen, H.2    Kraubetae, D.3    Fischer, R.J.4    Bahl, H.5    Durre, P.6    Liebl, W.7    Ehrenreich, A.8
  • 61
    • 0036208358 scopus 로고    scopus 로고
    • Control of butanol formation in Clostridium acetobutylicum by transcriptional activation
    • 10.1128/JB.184.7.1966-1973.2002, 134926, 11889105
    • Thormann K, Feustel L, Lorenz K, Nakotte S, Durre P. Control of butanol formation in Clostridium acetobutylicum by transcriptional activation. J Bacteriol 2002, 184:1966-1973. 10.1128/JB.184.7.1966-1973.2002, 134926, 11889105.
    • (2002) J Bacteriol , vol.184 , pp. 1966-1973
    • Thormann, K.1    Feustel, L.2    Lorenz, K.3    Nakotte, S.4    Durre, P.5
  • 62
    • 77955559194 scopus 로고    scopus 로고
    • A proteomic and transcriptional view of acidogenic and solventogenic steady-state cells of Clostridium acetobutylicum in a chemostat culture
    • 10.1007/s00253-010-2741-x, 3227527, 20617312
    • Janssen H, Doring C, Ehrenreich A, Voigt B, Hecker M, Bahl H, Fischer RJ. A proteomic and transcriptional view of acidogenic and solventogenic steady-state cells of Clostridium acetobutylicum in a chemostat culture. Appl Microbiol Biotechnol 2010, 87:2209-2226. 10.1007/s00253-010-2741-x, 3227527, 20617312.
    • (2010) Appl Microbiol Biotechnol , vol.87 , pp. 2209-2226
    • Janssen, H.1    Doring, C.2    Ehrenreich, A.3    Voigt, B.4    Hecker, M.5    Bahl, H.6    Fischer, R.J.7
  • 63
    • 17444404231 scopus 로고    scopus 로고
    • Expression of abrB310 and SinR, and effects of decreased abrB310 expression on the transition from acidogenesis to solventogenesis, in Clostridium acetobutylicum ATCC 824
    • 10.1128/AEM.71.4.1987-1995.2005, 1082569, 15812030
    • Scotcher MC, Rudolph FB, Bennett GN. Expression of abrB310 and SinR, and effects of decreased abrB310 expression on the transition from acidogenesis to solventogenesis, in Clostridium acetobutylicum ATCC 824. Appl Environ Microbiol 2005, 71:1987-1995. 10.1128/AEM.71.4.1987-1995.2005, 1082569, 15812030.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 1987-1995
    • Scotcher, M.C.1    Rudolph, F.B.2    Bennett, G.N.3
  • 65
    • 0027383357 scopus 로고
    • Cloning, sequencing, and molecular analysis of the sol operon of Clostridium acetobutylicum, a chromosomal locus involved in solventogenesis
    • 206823, 8226639
    • Fischer RJ, Helms J, Durre P. Cloning, sequencing, and molecular analysis of the sol operon of Clostridium acetobutylicum, a chromosomal locus involved in solventogenesis. J Bacteriol 1993, 175:6959-6969. 206823, 8226639.
    • (1993) J Bacteriol , vol.175 , pp. 6959-6969
    • Fischer, R.J.1    Helms, J.2    Durre, P.3
  • 66
    • 0034002409 scopus 로고    scopus 로고
    • Identification and characterization of a second butyrate kinase from Clostridium acetobutylicum ATCC 824
    • Huang KX, Huang S, Rudolph FB, Bennett GN. Identification and characterization of a second butyrate kinase from Clostridium acetobutylicum ATCC 824. J Mol Microbiol Biotechnol 2000, 2:33-38.
    • (2000) J Mol Microbiol Biotechnol , vol.2 , pp. 33-38
    • Huang, K.X.1    Huang, S.2    Rudolph, F.B.3    Bennett, G.N.4
  • 67
    • 71249149226 scopus 로고    scopus 로고
    • Structural correlations of activity of Clostridium acetobutylicum ATCC 824 butyrate kinase isozymes
    • Sullivan L, Cates MS, Bennett GN. Structural correlations of activity of Clostridium acetobutylicum ATCC 824 butyrate kinase isozymes. Enzyme Microb Technol 2010, 46:118-124.
    • (2010) Enzyme Microb Technol , vol.46 , pp. 118-124
    • Sullivan, L.1    Cates, M.S.2    Bennett, G.N.3
  • 69
    • 0038782128 scopus 로고    scopus 로고
    • DNA array-based transcriptional analysis of asporogenous, nonsolventogenic Clostridium acetobutylicum strains SKO1 and M5
    • 10.1128/JB.185.15.4539-4547.2003, 165787, 12867463
    • Tomas CA, Alsaker KV, Bonarius HP, Hendriksen WT, Yang H, Beamish JA, Paredes CJ, Papoutsakis ET. DNA array-based transcriptional analysis of asporogenous, nonsolventogenic Clostridium acetobutylicum strains SKO1 and M5. J Bacteriol 2003, 185:4539-4547. 10.1128/JB.185.15.4539-4547.2003, 165787, 12867463.
    • (2003) J Bacteriol , vol.185 , pp. 4539-4547
    • Tomas, C.A.1    Alsaker, K.V.2    Bonarius, H.P.3    Hendriksen, W.T.4    Yang, H.5    Beamish, J.A.6    Paredes, C.J.7    Papoutsakis, E.T.8
  • 70
    • 79955011057 scopus 로고    scopus 로고
    • Multiple orphan histidine kinases interact directly with Spo0A to control the initiation of endospore formation in Clostridium acetobutylicum
    • 10.1111/j.1365-2958.2011.07608.x, 3097173, 21401736
    • Steiner E, Dago AE, Young DI, Heap JT, Minton NP, Hoch JA, Young M. Multiple orphan histidine kinases interact directly with Spo0A to control the initiation of endospore formation in Clostridium acetobutylicum. Mol Microbiol 2011, 80:641-654. 10.1111/j.1365-2958.2011.07608.x, 3097173, 21401736.
    • (2011) Mol Microbiol , vol.80 , pp. 641-654
    • Steiner, E.1    Dago, A.E.2    Young, D.I.3    Heap, J.T.4    Minton, N.P.5    Hoch, J.A.6    Young, M.7
  • 71
    • 0036282456 scopus 로고    scopus 로고
    • Northern, morphological, and fermentation analysis of spo0A inactivation and overexpression in Clostridium acetobutylicum ATCC 824
    • 10.1128/JB.184.13.3586-3597.2002, 135115, 12057953
    • Harris LM, Welker NE, Papoutsakis ET. Northern, morphological, and fermentation analysis of spo0A inactivation and overexpression in Clostridium acetobutylicum ATCC 824. J Bacteriol 2002, 184:3586-3597. 10.1128/JB.184.13.3586-3597.2002, 135115, 12057953.
    • (2002) J Bacteriol , vol.184 , pp. 3586-3597
    • Harris, L.M.1    Welker, N.E.2    Papoutsakis, E.T.3
  • 72
    • 46949101196 scopus 로고    scopus 로고
    • Activity of abrB310 promoter in wild type and spo0A-deficient strains of Clostridium acetobutylicum
    • 10.1007/s10295-008-0341-x, 18347825
    • Scotcher MC, Bennett GN. Activity of abrB310 promoter in wild type and spo0A-deficient strains of Clostridium acetobutylicum. J Ind Microbiol Biotechnol 2008, 35:743-750. 10.1007/s10295-008-0341-x, 18347825.
    • (2008) J Ind Microbiol Biotechnol , vol.35 , pp. 743-750
    • Scotcher, M.C.1    Bennett, G.N.2
  • 73
    • 0027382981 scopus 로고
    • Sequence and arrangement of two genes of the butyrate-synthesis pathway of Clostridium acetobutylicum ATCC 824
    • 10.1016/0378-1119(93)90182-3, 8244020
    • Walter KA, Nair RV, Cary JW, Bennett GN, Papoutsakis ET. Sequence and arrangement of two genes of the butyrate-synthesis pathway of Clostridium acetobutylicum ATCC 824. Gene 1993, 134:107-111. 10.1016/0378-1119(93)90182-3, 8244020.
    • (1993) Gene , vol.134 , pp. 107-111
    • Walter, K.A.1    Nair, R.V.2    Cary, J.W.3    Bennett, G.N.4    Papoutsakis, E.T.5
  • 75
    • 79551477738 scopus 로고    scopus 로고
    • Genome-wide binding profiles of the Bacillus subtilis transition state regulator AbrB and its homolog Abh reveals their interactive role in transcriptional regulation
    • 10.1093/nar/gkq780, 3025583, 20817675
    • Chumsakul O, Takahashi H, Oshima T, Hishimoto T, Kanaya S, Ogasawara N, Ishikawa S. Genome-wide binding profiles of the Bacillus subtilis transition state regulator AbrB and its homolog Abh reveals their interactive role in transcriptional regulation. Nucleic Acids Res 2011, 39:414-428. 10.1093/nar/gkq780, 3025583, 20817675.
    • (2011) Nucleic Acids Res , vol.39 , pp. 414-428
    • Chumsakul, O.1    Takahashi, H.2    Oshima, T.3    Hishimoto, T.4    Kanaya, S.5    Ogasawara, N.6    Ishikawa, S.7
  • 76
    • 0024118243 scopus 로고
    • Structure of the gene for the transition state regulator, abrB: regulator synthesis is controlled by the spo0A sporulation gene in Bacillus subtilis
    • 10.1111/j.1365-2958.1988.tb00079.x, 3145384
    • Perego M, Spiegelman GB, Hoch JA. Structure of the gene for the transition state regulator, abrB: regulator synthesis is controlled by the spo0A sporulation gene in Bacillus subtilis. Mol Microbiol 1988, 2:689-699. 10.1111/j.1365-2958.1988.tb00079.x, 3145384.
    • (1988) Mol Microbiol , vol.2 , pp. 689-699
    • Perego, M.1    Spiegelman, G.B.2    Hoch, J.A.3
  • 77
    • 30544443489 scopus 로고    scopus 로고
    • A comparative genomic view of clostridial sporulation and physiology
    • 10.1038/nrmicro1288, 16261177
    • Paredes CJ, Alsaker KV, Papoutsakis ET. A comparative genomic view of clostridial sporulation and physiology. Nat Rev Microbiol 2005, 3:969-978. 10.1038/nrmicro1288, 16261177.
    • (2005) Nat Rev Microbiol , vol.3 , pp. 969-978
    • Paredes, C.J.1    Alsaker, K.V.2    Papoutsakis, E.T.3
  • 78
    • 1942454236 scopus 로고    scopus 로고
    • Initiation of endospore formation in Clostridium acetobutylicum
    • 10.1016/j.anaerobe.2003.11.001, 16701502
    • Durre P, Hollergschwandner C. Initiation of endospore formation in Clostridium acetobutylicum. Anaerobe 2004, 10:69-74. 10.1016/j.anaerobe.2003.11.001, 16701502.
    • (2004) Anaerobe , vol.10 , pp. 69-74
    • Durre, P.1    Hollergschwandner, C.2
  • 79
    • 0024401302 scopus 로고
    • The transition state transcription regulator abrB of Bacillus subtilis is a DNA binding protein
    • 400994, 2504584
    • Strauch MA, Spiegelman GB, Perego M, Johnson WC, Burbulys D, Hoch JA. The transition state transcription regulator abrB of Bacillus subtilis is a DNA binding protein. EMBO J 1989, 8:1615-1621. 400994, 2504584.
    • (1989) EMBO J , vol.8 , pp. 1615-1621
    • Strauch, M.A.1    Spiegelman, G.B.2    Perego, M.3    Johnson, W.C.4    Burbulys, D.5    Hoch, J.A.6
  • 80
    • 1642263410 scopus 로고    scopus 로고
    • AbrB and Spo0E control the proper timing of sporulation in Bacillus subtilis
    • 10.1007/s00284-003-4186-2, 15057450
    • Shafikhani SH, Leighton T. AbrB and Spo0E control the proper timing of sporulation in Bacillus subtilis. Curr Microbiol 2004, 48:262-269. 10.1007/s00284-003-4186-2, 15057450.
    • (2004) Curr Microbiol , vol.48 , pp. 262-269
    • Shafikhani, S.H.1    Leighton, T.2
  • 81
    • 79956108383 scopus 로고    scopus 로고
    • Inactivation of sigmaF in Clostridium acetobutylicum ATCC 824 blocks sporulation prior to asymmetric division and abolishes sigmaE and sigmaG protein expression but does not block solvent formation
    • 10.1128/JB.00088-11, 3133174, 21421765
    • Jones SW, Tracy BP, Gaida SM, Papoutsakis ET. Inactivation of sigmaF in Clostridium acetobutylicum ATCC 824 blocks sporulation prior to asymmetric division and abolishes sigmaE and sigmaG protein expression but does not block solvent formation. J Bacteriol 2011, 193:2429-2440. 10.1128/JB.00088-11, 3133174, 21421765.
    • (2011) J Bacteriol , vol.193 , pp. 2429-2440
    • Jones, S.W.1    Tracy, B.P.2    Gaida, S.M.3    Papoutsakis, E.T.4
  • 82
    • 79952399941 scopus 로고    scopus 로고
    • Inactivation of sigmaE and sigmaG in Clostridium acetobutylicum illuminates their roles in clostridial-cell-form biogenesis, granulose synthesis, solventogenesis, and spore morphogenesis
    • 10.1128/JB.01380-10, 3067626, 21217008
    • Tracy BP, Jones SW, Papoutsakis ET. Inactivation of sigmaE and sigmaG in Clostridium acetobutylicum illuminates their roles in clostridial-cell-form biogenesis, granulose synthesis, solventogenesis, and spore morphogenesis. J Bacteriol 2011, 193:1414-1426. 10.1128/JB.01380-10, 3067626, 21217008.
    • (2011) J Bacteriol , vol.193 , pp. 1414-1426
    • Tracy, B.P.1    Jones, S.W.2    Papoutsakis, E.T.3
  • 83
    • 38549162091 scopus 로고    scopus 로고
    • DBTBS: a database of transcriptional regulation in Bacillus subtilis containing upstream intergenic conservation information
    • 10.1093/nar/gkn421, 2247474, 17962296
    • Sierro N, Makita Y, de Hoon M, Nakai K. DBTBS: a database of transcriptional regulation in Bacillus subtilis containing upstream intergenic conservation information. Nucleic Acids Res 2008, 36:D93-D96. 10.1093/nar/gkn421, 2247474, 17962296.
    • (2008) Nucleic Acids Res , vol.36
    • Sierro, N.1    Makita, Y.2    de Hoon, M.3    Nakai, K.4
  • 84
    • 0142106366 scopus 로고    scopus 로고
    • Identification of sporulation genes by genome-wide analysis of the sigmaE regulon of Bacillus subtilis
    • 10.1099/mic.0.26413-0, 14523133
    • Feucht A, Evans L, Errington J. Identification of sporulation genes by genome-wide analysis of the sigmaE regulon of Bacillus subtilis. Microbiology 2003, 149:3023-3034. 10.1099/mic.0.26413-0, 14523133.
    • (2003) Microbiology , vol.149 , pp. 3023-3034
    • Feucht, A.1    Evans, L.2    Errington, J.3
  • 85
    • 4344593961 scopus 로고    scopus 로고
    • Genetic analysis of the Bacillus subtilis sigG promoter, which controls the sporulation-specific transcription factor sigma G
    • 10.1099/mic.0.26914-0, 15256570
    • Evans L, Feucht A, Errington J. Genetic analysis of the Bacillus subtilis sigG promoter, which controls the sporulation-specific transcription factor sigma G. Microbiology 2004, 150:2277-2287. 10.1099/mic.0.26914-0, 15256570.
    • (2004) Microbiology , vol.150 , pp. 2277-2287
    • Evans, L.1    Feucht, A.2    Errington, J.3
  • 86
    • 0032460998 scopus 로고    scopus 로고
    • A spore coat protein, CotS, of Bacillus subtilis is synthesized under the regulation of sigmaK and GerE during development and is located in the inner coat layer of spores
    • 107266, 9603889
    • Takamatsu H, Chikahiro Y, Kodama T, Koide H, Kozuka S, Tochikubo K, Watabe K. A spore coat protein, CotS, of Bacillus subtilis is synthesized under the regulation of sigmaK and GerE during development and is located in the inner coat layer of spores. J Bacteriol 1998, 180:2968-2974. 107266, 9603889.
    • (1998) J Bacteriol , vol.180 , pp. 2968-2974
    • Takamatsu, H.1    Chikahiro, Y.2    Kodama, T.3    Koide, H.4    Kozuka, S.5    Tochikubo, K.6    Watabe, K.7
  • 87
    • 0027369106 scopus 로고
    • Multilevel regulation of the sporulation transcription factor sigma K in Bacillus subtilis
    • 206878, 8226681
    • Oke V, Losick R. Multilevel regulation of the sporulation transcription factor sigma K in Bacillus subtilis. J Bacteriol 1993, 175:7341-7347. 206878, 8226681.
    • (1993) J Bacteriol , vol.175 , pp. 7341-7347
    • Oke, V.1    Losick, R.2
  • 88
    • 0033023331 scopus 로고    scopus 로고
    • Control of sigma factor activity during Bacillus subtilis sporulation
    • 10.1046/j.1365-2958.1999.01214.x, 10200951
    • Kroos L, Zhang B, Ichikawa H, Yu YT. Control of sigma factor activity during Bacillus subtilis sporulation. Mol Microbiol 1999, 31:1285-1294. 10.1046/j.1365-2958.1999.01214.x, 10200951.
    • (1999) Mol Microbiol , vol.31 , pp. 1285-1294
    • Kroos, L.1    Zhang, B.2    Ichikawa, H.3    Yu, Y.T.4
  • 89
    • 25144523072 scopus 로고    scopus 로고
    • Control of the expression and compartmentalization of (sigma)G activity during sporulation of Bacillus subtilis by regulators of (sigma)F and (sigma)E
    • 10.1128/JB.187.19.6832-6840.2005, 1251595, 16166546
    • Chary VK, Meloni M, Hilbert DW, Piggot PJ. Control of the expression and compartmentalization of (sigma)G activity during sporulation of Bacillus subtilis by regulators of (sigma)F and (sigma)E. J Bacteriol 2005, 187:6832-6840. 10.1128/JB.187.19.6832-6840.2005, 1251595, 16166546.
    • (2005) J Bacteriol , vol.187 , pp. 6832-6840
    • Chary, V.K.1    Meloni, M.2    Hilbert, D.W.3    Piggot, P.J.4
  • 90
    • 0000158375 scopus 로고
    • Thiolase from Clostridium-Acetobutylicum Atcc-824 and Its Role in the Synthesis of Acids and Solvents
    • 204361, 16347774
    • Wiesenborn DP, Rudolph FB, Papoutsakis ET. Thiolase from Clostridium-Acetobutylicum Atcc-824 and Its Role in the Synthesis of Acids and Solvents. Appl Environ Microbiol 1988, 54:2717-2722. 204361, 16347774.
    • (1988) Appl Environ Microbiol , vol.54 , pp. 2717-2722
    • Wiesenborn, D.P.1    Rudolph, F.B.2    Papoutsakis, E.T.3
  • 91
    • 0001441208 scopus 로고
    • Effect of Butanol Challenge and Temperature on Lipid Composition and Membrane Fluidity of Butanol-Tolerant Clostridium acetobutylicum
    • 204212, 16347502
    • Baer SH, Blaschek HP, Smith TL. Effect of Butanol Challenge and Temperature on Lipid Composition and Membrane Fluidity of Butanol-Tolerant Clostridium acetobutylicum. Appl Environ Microbiol 1987, 53:2854-2861. 204212, 16347502.
    • (1987) Appl Environ Microbiol , vol.53 , pp. 2854-2861
    • Baer, S.H.1    Blaschek, H.P.2    Smith, T.L.3
  • 92
    • 0015155688 scopus 로고
    • Oxygen and the growth and metabolism of Clostridium acetobutylicum
    • 10.1099/00221287-68-3-307, 4332793
    • O'Brien RW, Morris JG. Oxygen and the growth and metabolism of Clostridium acetobutylicum. J Gen Microbiol 1971, 68:307-318. 10.1099/00221287-68-3-307, 4332793.
    • (1971) J Gen Microbiol , vol.68 , pp. 307-318
    • O'Brien, R.W.1    Morris, J.G.2
  • 93
    • 65449142038 scopus 로고    scopus 로고
    • Analysis of whole genomic expression profiles of Helicobacter pylori related chronic atrophic gastritis with IL-1B-31CC/-511TT genotypes
    • 10.1111/j.1751-2980.2009.00367.x, 19426391
    • Wang SY, Shen XY, Wu CY, Pan F, Shen YY, Sheng HH, Chen XM, Gao HJ. Analysis of whole genomic expression profiles of Helicobacter pylori related chronic atrophic gastritis with IL-1B-31CC/-511TT genotypes. J Dig Dis 2009, 10:99-106. 10.1111/j.1751-2980.2009.00367.x, 19426391.
    • (2009) J Dig Dis , vol.10 , pp. 99-106
    • Wang, S.Y.1    Shen, X.Y.2    Wu, C.Y.3    Pan, F.4    Shen, Y.Y.5    Sheng, H.H.6    Chen, X.M.7    Gao, H.J.8
  • 94
    • 0037316303 scopus 로고    scopus 로고
    • A comparison of normalization methods for high density oligonucleotide array data based on variance and bias
    • 10.1093/bioinformatics/19.2.185, 12538238
    • Bolstad BM, Irizarry RA, Astrand M, Speed TP. A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics 2003, 19:185-193. 10.1093/bioinformatics/19.2.185, 12538238.
    • (2003) Bioinformatics , vol.19 , pp. 185-193
    • Bolstad, B.M.1    Irizarry, R.A.2    Astrand, M.3    Speed, T.P.4
  • 95
    • 0032441150 scopus 로고    scopus 로고
    • Cluster analysis and display of genome-wide expression patterns
    • 10.1073/pnas.95.25.14863, 24541, 9843981
    • Eisen MB, Spellman PT, Brown PO, Botstein D. Cluster analysis and display of genome-wide expression patterns. Proc Natl Acad Sci U S A 1998, 95:14863-14868. 10.1073/pnas.95.25.14863, 24541, 9843981.
    • (1998) Proc Natl Acad Sci U S A , vol.95 , pp. 14863-14868
    • Eisen, M.B.1    Spellman, P.T.2    Brown, P.O.3    Botstein, D.4
  • 96
    • 9444225935 scopus 로고    scopus 로고
    • Java Treeview-extensible visualization of microarray data
    • 10.1093/bioinformatics/bth349, 15180930
    • Saldanha AJ. Java Treeview-extensible visualization of microarray data. Bioinformatics 2004, 20:3246-3248. 10.1093/bioinformatics/bth349, 15180930.
    • (2004) Bioinformatics , vol.20 , pp. 3246-3248
    • Saldanha, A.J.1
  • 97
    • 0030203863 scopus 로고    scopus 로고
    • TreeView: an application to display phylogenetic trees on personal computers
    • Page RD. TreeView: an application to display phylogenetic trees on personal computers. Comput Appl Biosci 1996, 12:357-358.
    • (1996) Comput Appl Biosci , vol.12 , pp. 357-358
    • Page, R.D.1
  • 98
    • 0041620271 scopus 로고    scopus 로고
    • Regulatory sequence analysis tools
    • 10.1093/nar/gkg567, 168973, 12824373
    • van Helden J. Regulatory sequence analysis tools. Nucleic Acids Res 2003, 31:3593-3596. 10.1093/nar/gkg567, 168973, 12824373.
    • (2003) Nucleic Acids Res , vol.31 , pp. 3593-3596
    • van Helden, J.1
  • 99
    • 0025071837 scopus 로고
    • Site-directed mutagenesis of a catabolite repression operator sequence in Bacillus subtilis
    • 10.1073/pnas.87.16.6238, 54508, 2117276
    • Weickert MJ, Chambliss GH. Site-directed mutagenesis of a catabolite repression operator sequence in Bacillus subtilis. Proc Natl Acad Sci U S A 1990, 87:6238-6242. 10.1073/pnas.87.16.6238, 54508, 2117276.
    • (1990) Proc Natl Acad Sci U S A , vol.87 , pp. 6238-6242
    • Weickert, M.J.1    Chambliss, G.H.2
  • 100
    • 0030057004 scopus 로고    scopus 로고
    • The role of CcpA transcriptional regulator in carbon metabolism in Bacillus subtilis
    • 10.1111/j.1574-6968.1996.tb07959.x, 8598282
    • Henkin TM. The role of CcpA transcriptional regulator in carbon metabolism in Bacillus subtilis. FEMS Microbiol Lett 1996, 135:9-15. 10.1111/j.1574-6968.1996.tb07959.x, 8598282.
    • (1996) FEMS Microbiol Lett , vol.135 , pp. 9-15
    • Henkin, T.M.1
  • 101
    • 34447506667 scopus 로고    scopus 로고
    • Quantifying similarity between motifs
    • 10.1186/gb-2007-8-2-r24, 1852410, 17324271
    • Gupta S, Stamatoyannopoulos JA, Bailey TL, Noble WS. Quantifying similarity between motifs. Genome Biol 2007, 8:R24. 10.1186/gb-2007-8-2-r24, 1852410, 17324271.
    • (2007) Genome Biol , vol.8
    • Gupta, S.1    Stamatoyannopoulos, J.A.2    Bailey, T.L.3    Noble, W.S.4
  • 105
    • 0031733741 scopus 로고    scopus 로고
    • Transcriptional activation of the Bacillus subtilis ackA gene requires sequences upstream of the promoter
    • 107671, 9811655
    • Turinsky AJ, Grundy FJ, Kim JH, Chambliss GH, Henkin TM. Transcriptional activation of the Bacillus subtilis ackA gene requires sequences upstream of the promoter. J Bacteriol 1998, 180:5961-5967. 107671, 9811655.
    • (1998) J Bacteriol , vol.180 , pp. 5961-5967
    • Turinsky, A.J.1    Grundy, F.J.2    Kim, J.H.3    Chambliss, G.H.4    Henkin, T.M.5
  • 106
    • 0035087351 scopus 로고    scopus 로고
    • Transcriptional activation of the Bacillus subtilis ackA promoter requires sequences upstream of the CcpA binding site
    • 10.1128/JB.183.7.2389-2393.2001, 95151, 11244084
    • Moir-Blais TR, Grundy FJ, Henkin TM. Transcriptional activation of the Bacillus subtilis ackA promoter requires sequences upstream of the CcpA binding site. J Bacteriol 2001, 183:2389-2393. 10.1128/JB.183.7.2389-2393.2001, 95151, 11244084.
    • (2001) J Bacteriol , vol.183 , pp. 2389-2393
    • Moir-Blais, T.R.1    Grundy, F.J.2    Henkin, T.M.3
  • 107
    • 20344400380 scopus 로고    scopus 로고
    • Elaborate transcription regulation of the Bacillus subtilis ilv-leu operon involved in the biosynthesis of branched-chain amino acids through global regulators of CcpA, CodY and TnrA
    • 10.1111/j.1365-2958.2005.04635.x, 15916606
    • Tojo S, Satomura T, Morisaki K, Deutscher J, Hirooka K, Fujita Y. Elaborate transcription regulation of the Bacillus subtilis ilv-leu operon involved in the biosynthesis of branched-chain amino acids through global regulators of CcpA, CodY and TnrA. Mol Microbiol 2005, 56:1560-1573. 10.1111/j.1365-2958.2005.04635.x, 15916606.
    • (2005) Mol Microbiol , vol.56 , pp. 1560-1573
    • Tojo, S.1    Satomura, T.2    Morisaki, K.3    Deutscher, J.4    Hirooka, K.5    Fujita, Y.6
  • 108
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: multiple sequence alignment with high accuracy and high throughput
    • 10.1093/nar/gkh340, 390337, 15034147
    • Edgar RC. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 2004, 32:1792-1797. 10.1093/nar/gkh340, 390337, 15034147.
    • (2004) Nucleic Acids Res , vol.32 , pp. 1792-1797
    • Edgar, R.C.1
  • 109
    • 2142738304 scopus 로고    scopus 로고
    • WebLogo: a sequence logo generator
    • 10.1101/gr.849004, 419797, 15173120
    • Crooks GE, Hon G, Chandonia JM, Brenner SE. WebLogo: a sequence logo generator. Genome Res 2004, 14:1188-1190. 10.1101/gr.849004, 419797, 15173120.
    • (2004) Genome Res , vol.14 , pp. 1188-1190
    • Crooks, G.E.1    Hon, G.2    Chandonia, J.M.3    Brenner, S.E.4
  • 110
    • 27744599573 scopus 로고    scopus 로고
    • Design, optimization and validation of genomic DNA microarrays for examining the Clostridium acetobutylicum transcriptome
    • Alsaker KV, Paredes CJ, Papoutsakis ET. Design, optimization and validation of genomic DNA microarrays for examining the Clostridium acetobutylicum transcriptome. Biotechnol Bioprocess Eng 2005, 10:432-443.
    • (2005) Biotechnol Bioprocess Eng , vol.10 , pp. 432-443
    • Alsaker, K.V.1    Paredes, C.J.2    Papoutsakis, E.T.3
  • 111
    • 14644424556 scopus 로고    scopus 로고
    • SpoIIE regulates sporulation but does not directly affect solventogenesis in Clostridium acetobutylicum ATCC 824
    • 10.1128/JB.187.6.1930-1936.2005, 1064033, 15743939
    • Scotcher MC, Bennett GN. SpoIIE regulates sporulation but does not directly affect solventogenesis in Clostridium acetobutylicum ATCC 824. J Bacteriol 2005, 187:1930-1936. 10.1128/JB.187.6.1930-1936.2005, 1064033, 15743939.
    • (2005) J Bacteriol , vol.187 , pp. 1930-1936
    • Scotcher, M.C.1    Bennett, G.N.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.