Transcriptional regulation of pentose utilisation systems in the Bacillus/Clostridium group of bacteria

FEMS Microbiology Letters

Volumn 205, Issue 2, 2001, Pages 305-314

  Rodionov, Dmitry A ^a   Mironov, Andrey A ^b   Gelfand, Mikhail S ^b  

^a State Scientific Center   (Russian Federation)

^b Integrated Genomics   (Russian Federation)

Author keywords

AraR; CcpA; Computer analysis; RbsR; Ribulokinase; Transcriptional regulation; XylR

Indexed keywords

ARABINOSE; PENTOSE; PHOSPHOTRANSFERASE; RIBOSE; TRANSCRIPTION FACTOR; XYLOSE;

ARTICLE; BACILLUS SUBTILIS; CATABOLITE REPRESSION; CLOSTRIDIUM ACETOBUTYLICUM; CONTROLLED STUDY; DNA RESPONSIVE ELEMENT; ENTEROCOCCUS FAECIUM; GENE CLUSTER; GENE SEQUENCE; GENOME; MOLECULAR EVOLUTION; NONHUMAN; OPERATOR GENE; OPERON; PRIORITY JOURNAL; REGULON; TRANSCRIPTION REGULATION;

ARAC TRANSCRIPTION FACTOR; BACILLUS; BACTERIAL PROTEINS; BINDING SITES; CLOSTRIDIUM; DNA-BINDING PROTEINS; GENES, BACTERIAL; GENES, REGULATOR; OPERON; PENTOSES; PHYLOGENY; REPRESSOR PROTEINS; TRANSCRIPTION FACTORS; TRANSCRIPTION, GENETIC;

BACILLUS SUBTILIS; CLOSTRIDIUM; CLOSTRIDIUM ACETOBUTYLICUM; ENTEROCOCCUS; ENTEROCOCCUS FAECIUM; FIRMICUTES;

EID: 0035910178     PISSN: 03781097     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0378-1097(01)00494-3     Document Type: Article

References (41)

1. Transcriptional regulation of transport and utilization systems for hexuronides, hexuronates and hexonates in gamma purple bacteria
2. Computer analysis of transcription regulatory patterns in completely sequenced bacterial genomes
3. Comparative approach to analysis of regulation in complete genomes: Multidrug resistance systems in gamma-proteobacteria
4. Prediction of transcription regulatory sites in Archaea by a comparative genomic approach
5. Recognition of regulatory sites by genomic comparison
6. Comparative analysis of regulatory patterns in bacterial genomes
7. Phylogenetic footprinting of transcription factor binding sites in proteobacterial genomes
8. A comprehensive library of DNA-binding site matrices for 55 proteins applied to the complete Escherichia coli K-12 genome
9. Comparison of five methods for finding conserved sequences in multiple alignments of gene regulatory regions
10. Web-based visualization tools for bacterial genome alignments
11. Regulation of carbon catabolism in Bacillus species
12. Mode of action of AraR, the key regulator of L-arabinose metabolism in Bacillus subtilis
13. The Bacillus subtilis AraE protein displays a broad substrate specificity for several different sugars
14. The Bacillus subtilis L-arabinose (ara) operon: Nucleotide sequence, genetic organization and expression
15. Analysis of a ribose transport operon from Bacillus subtilis
16. Regulation of expression, genetic organization and substrate specificity of xylose uptake in Bacillus megaterium
17. Transcription of the xyl operon is controlled in Bacillus subtilis by tandem overlapping operators spaced by four base-pairs
18. Regulation of xylose utilization in Bacillus licheniformis: Xyl repressor-xyl-operator interaction studied by DNA modification protection and interference
19. Regulation of xylanolytic enzymes in Bacillus subtilis
20. Cloning and DNA sequence of the gene coding for Bacillus stearothermophilus T-6 xylanase
21. Catabolite repression of the Bacillus subtilis xyl operon involves a cis element functional in the context of an unrelated sequence and glucose exerts additional XylR-dependent repression
22. Phosphorylation of either Crh or HPr mediates binding of CcpA to the Bacillus subtilis xyn cre and catabolite repression of the xyn operon
23. Catabolite repression of the xyl operon in Bacillus megaterium
24. Information content of binding sites on nucleotide sequences
25. GenomeExplorer: Software for analysis of complete bacterial genomes
26. The COG database: A tool for genome-scale analysis of protein functions and evolution
27. Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
28. The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
29. Evolutionary trees from DNA sequences: A maximum likelihood approach
30. TreeView: An application to display phylogenetic trees on personal computers
31. Microbial genome analyses: Global comparisons of transport capabilities based on phylogenies, bioenergetics and substrate specificities
32. Cloning, functional analysis, and transcriptional regulation of the Bacillus subtilis araE gene involved in L-arabinose utilization
33. The glucuronic acid utilization gene cluster from Bacillus stearothermophilus T-6
34. Ribose utilization in Lactobacillus sakei: Analysis of the regulation of the rbs operon and putative involvement of a new transporter
35. Regulation of Staphylococcus xylosus xylose utilization genes at the molecular level
36. Cloning and characterization of transcription of the xylAB operon in Thermoanaerobacter ethanolicus
37. Cloning, sequence analysis and characterization of the genes involved in isoprimeverose metabolism in Lactobacillus pentosus
38. + symporter of Lactobacillus brevis
39. DNA binding sites for the Mlc and NagC proteins: Regulation of nagE, encoding the N-acetylglucosamine-specific transporter in Escherichia coli
40. Transcriptional regulation of pentose utilization systems in the gamma subdivision of Proteobacteria