-
1
-
-
67651159365
-
Transcriptional control of mitochondrial biogenesis and function
-
Hock M.B., Kralli A. Transcriptional control of mitochondrial biogenesis and function. Annu. Rev. Physiol. 2009, 71:177-203.
-
(2009)
Annu. Rev. Physiol.
, vol.71
, pp. 177-203
-
-
Hock, M.B.1
Kralli, A.2
-
2
-
-
78149408058
-
Empowering self-renewal and differentiation: the role of mitochondria in stem cells
-
Rehman J. Empowering self-renewal and differentiation: the role of mitochondria in stem cells. J. Mol. Med. (Berl.) 2010, 88:981-986.
-
(2010)
J. Mol. Med. (Berl.)
, vol.88
, pp. 981-986
-
-
Rehman, J.1
-
3
-
-
79960230433
-
Mitochondria in apoptosis: Bcl-2 family members and mitochondrial dynamics
-
Martinou J.C., Youle R.J. Mitochondria in apoptosis: Bcl-2 family members and mitochondrial dynamics. Dev. Cell 2011, 21:92-101.
-
(2011)
Dev. Cell
, vol.21
, pp. 92-101
-
-
Martinou, J.C.1
Youle, R.J.2
-
4
-
-
79959505900
-
Molecules and roles of mitochondrial calcium signaling
-
Mammucari C., Patron M., Granatiero V., Rizzuto R. Molecules and roles of mitochondrial calcium signaling. Biofactors 2011, 37:219-227.
-
(2011)
Biofactors
, vol.37
, pp. 219-227
-
-
Mammucari, C.1
Patron, M.2
Granatiero, V.3
Rizzuto, R.4
-
6
-
-
77953507107
-
Mitochondrial DNA mutations in disease and aging
-
Wallace D.C. Mitochondrial DNA mutations in disease and aging. Environ. Mol. Mutagen. 2010, 51:440-450.
-
(2010)
Environ. Mol. Mutagen.
, vol.51
, pp. 440-450
-
-
Wallace, D.C.1
-
7
-
-
77953360335
-
Animal models of mitochondrial DNA transactions in disease and ageing
-
Oliveira M.T., Garesse R., Kaguni L.S. Animal models of mitochondrial DNA transactions in disease and ageing. Exp. Gerontol. 2010, 45:489-502.
-
(2010)
Exp. Gerontol.
, vol.45
, pp. 489-502
-
-
Oliveira, M.T.1
Garesse, R.2
Kaguni, L.S.3
-
8
-
-
77953529585
-
A compendium of human mitochondrial gene expression machinery with links to disease
-
Shutt T.E., Shadel G.S. A compendium of human mitochondrial gene expression machinery with links to disease. Environ. Mol. Mutagen. 2010, 51:360-379.
-
(2010)
Environ. Mol. Mutagen.
, vol.51
, pp. 360-379
-
-
Shutt, T.E.1
Shadel, G.S.2
-
9
-
-
44849128599
-
Expression and maintenance of mitochondrial DNA: new insights into human disease pathology
-
Shadel G.S. Expression and maintenance of mitochondrial DNA: new insights into human disease pathology. Am. J. Pathol. 2008, 172:1445-1456.
-
(2008)
Am. J. Pathol.
, vol.172
, pp. 1445-1456
-
-
Shadel, G.S.1
-
10
-
-
79959450877
-
Mitochondrial DNA mutations in disease and aging
-
Park C.B., Larsson N.G. Mitochondrial DNA mutations in disease and aging. J. Cell Biol. 2011, 193:809-818.
-
(2011)
J. Cell Biol.
, vol.193
, pp. 809-818
-
-
Park, C.B.1
Larsson, N.G.2
-
11
-
-
79960555933
-
Human diseases with impaired mitochondrial protein synthesis
-
Rotig A. Human diseases with impaired mitochondrial protein synthesis. Biochim. Biophys. Acta 2011, 1807:1198-1205.
-
(2011)
Biochim. Biophys. Acta
, vol.1807
, pp. 1198-1205
-
-
Rotig, A.1
-
12
-
-
36849091403
-
Mitochondrial disease: a practical approach for primary care physicians
-
Haas R.H., Parikh S., Falk M.J., Saneto R.P., Wolf N.I., Darin N., Cohen B.H. Mitochondrial disease: a practical approach for primary care physicians. Pediatrics 2007, 120:1326-1333.
-
(2007)
Pediatrics
, vol.120
, pp. 1326-1333
-
-
Haas, R.H.1
Parikh, S.2
Falk, M.J.3
Saneto, R.P.4
Wolf, N.I.5
Darin, N.6
Cohen, B.H.7
-
13
-
-
0033367329
-
Mitochondrial genome evolution and the origin of eukaryotes
-
Lang B.F., Gray M.W., Burger G. Mitochondrial genome evolution and the origin of eukaryotes. Annu. Rev. Genet. 1999, 33:351-397.
-
(1999)
Annu. Rev. Genet.
, vol.33
, pp. 351-397
-
-
Lang, B.F.1
Gray, M.W.2
Burger, G.3
-
15
-
-
1842429937
-
Ancient invasions: from endosymbionts to organelles
-
Dyall S.D., Brown M.T., Johnson P.J. Ancient invasions: from endosymbionts to organelles. Science 2004, 304:253-257.
-
(2004)
Science
, vol.304
, pp. 253-257
-
-
Dyall, S.D.1
Brown, M.T.2
Johnson, P.J.3
-
16
-
-
0023649273
-
Yeast mitochondrial RNA polymerase is homologous to those encoded by bacteriophages T3 and T7
-
Masters B.S., Stohl L.L., Clayton D.A. Yeast mitochondrial RNA polymerase is homologous to those encoded by bacteriophages T3 and T7. Cell 1987, 51:89-99.
-
(1987)
Cell
, vol.51
, pp. 89-99
-
-
Masters, B.S.1
Stohl, L.L.2
Clayton, D.A.3
-
17
-
-
0029866234
-
Sequences homologous to yeast mitochondrial and bacteriophage T3 and T7 RNA polymerases are widespread throughout the eukaryotic lineage
-
Cermakian N., Ikeda T.M., Cedergren R., Gray M.W. Sequences homologous to yeast mitochondrial and bacteriophage T3 and T7 RNA polymerases are widespread throughout the eukaryotic lineage. Nucleic Acids Res. 1996, 24:648-654.
-
(1996)
Nucleic Acids Res.
, vol.24
, pp. 648-654
-
-
Cermakian, N.1
Ikeda, T.M.2
Cedergren, R.3
Gray, M.W.4
-
18
-
-
0000696532
-
Cloning and expression of the gene for bacteriophage T7 RNA polymerase
-
Davanloo P., Rosenberg A.H., Dunn J.J., Studier F.W. Cloning and expression of the gene for bacteriophage T7 RNA polymerase. Proc. Natl. Acad. Sci. U. S. A. 1984, 81:2035-2039.
-
(1984)
Proc. Natl. Acad. Sci. U. S. A.
, vol.81
, pp. 2035-2039
-
-
Davanloo, P.1
Rosenberg, A.H.2
Dunn, J.J.3
Studier, F.W.4
-
19
-
-
33845744837
-
Initiation and beyond: multiple functions of the human mitochondrial transcription machinery
-
Bonawitz N.D., Clayton D.A., Shadel G.S. Initiation and beyond: multiple functions of the human mitochondrial transcription machinery. Mol. Cell 2006, 24:813-825.
-
(2006)
Mol. Cell
, vol.24
, pp. 813-825
-
-
Bonawitz, N.D.1
Clayton, D.A.2
Shadel, G.S.3
-
20
-
-
0024094284
-
Mitochondrial RNA polymerase of Saccharomyces cerevisiae: composition and mechanism of promoter recognition
-
Schinkel A.H., Groot Koerkamp M.J., Tabak H.F. Mitochondrial RNA polymerase of Saccharomyces cerevisiae: composition and mechanism of promoter recognition. EMBO J. 1988, 7:3255-3262.
-
(1988)
EMBO J.
, vol.7
, pp. 3255-3262
-
-
Schinkel, A.H.1
Groot Koerkamp, M.J.2
Tabak, H.F.3
-
21
-
-
79960251405
-
Identification and characterization of the mitochondrial RNA polymerase and transcription factor in the fission yeast Schizosaccharomyces pombe
-
Jiang H., Sun W., Wang Z., Zhang J., Chen D., Murchie A.I. Identification and characterization of the mitochondrial RNA polymerase and transcription factor in the fission yeast Schizosaccharomyces pombe. Nucleic Acids Res. 2011, 39:5119-5130.
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. 5119-5130
-
-
Jiang, H.1
Sun, W.2
Wang, Z.3
Zhang, J.4
Chen, D.5
Murchie, A.I.6
-
22
-
-
0036909437
-
Multi-protein complexes in eukaryotic gene transcription
-
Martinez E. Multi-protein complexes in eukaryotic gene transcription. Plant Mol. Biol. 2002, 50:925-947.
-
(2002)
Plant Mol. Biol.
, vol.50
, pp. 925-947
-
-
Martinez, E.1
-
23
-
-
0035394633
-
Comparison of the RNA polymerase III transcription machinery in Schizosaccharomyces pombe, Saccharomyces cerevisiae and human
-
Huang Y., Maraia R.J. Comparison of the RNA polymerase III transcription machinery in Schizosaccharomyces pombe, Saccharomyces cerevisiae and human. Nucleic Acids Res. 2001, 29:2675-2690.
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 2675-2690
-
-
Huang, Y.1
Maraia, R.J.2
-
25
-
-
0036840677
-
Role of the RNA polymerase sigma subunit in transcription initiation
-
Borukhov S., Severinov K. Role of the RNA polymerase sigma subunit in transcription initiation. Res. Microbiol. 2002, 153:557-562.
-
(2002)
Res. Microbiol.
, vol.153
, pp. 557-562
-
-
Borukhov, S.1
Severinov, K.2
-
26
-
-
7244233311
-
Expression and purification of wild type and mutant forms of the yeast mitochondrial core RNA polymerase, Rpo41
-
Matsunaga M., Jang S.H., Jaehning J.A. Expression and purification of wild type and mutant forms of the yeast mitochondrial core RNA polymerase, Rpo41. Protein Expr. Purif. 2004, 35:126-130.
-
(2004)
Protein Expr. Purif.
, vol.35
, pp. 126-130
-
-
Matsunaga, M.1
Jang, S.H.2
Jaehning, J.A.3
-
27
-
-
0019512473
-
Mitochondrial transcription complex from Saccharomyces cerevisiae
-
Levens D., Morimoto R., Rabinowitz M. Mitochondrial transcription complex from Saccharomyces cerevisiae. J. Biol. Chem. 1981, 256:1466-1472.
-
(1981)
J. Biol. Chem.
, vol.256
, pp. 1466-1472
-
-
Levens, D.1
Morimoto, R.2
Rabinowitz, M.3
-
28
-
-
0036648997
-
Mitochondrial transcription factors B1 and B2 activate transcription of human mtDNA
-
Falkenberg M., Gaspari M., Rantanen A., Trifunovic A., Larsson N.G., Gustafsson C.M. Mitochondrial transcription factors B1 and B2 activate transcription of human mtDNA. Nat. Genet. 2002, 31:289-294.
-
(2002)
Nat. Genet.
, vol.31
, pp. 289-294
-
-
Falkenberg, M.1
Gaspari, M.2
Rantanen, A.3
Trifunovic, A.4
Larsson, N.G.5
Gustafsson, C.M.6
-
29
-
-
0036148610
-
A human mitochondrial transcription factor is related to RNA adenine methyltransferases and binds S-adenosylmethionine
-
McCulloch V., Seidel-Rogol B.L., Shadel G.S. A human mitochondrial transcription factor is related to RNA adenine methyltransferases and binds S-adenosylmethionine. Mol. Cell. Biol. 2002, 22:1116-1125.
-
(2002)
Mol. Cell. Biol.
, vol.22
, pp. 1116-1125
-
-
McCulloch, V.1
Seidel-Rogol, B.L.2
Shadel, G.S.3
-
30
-
-
77955456575
-
Core human mitochondrial transcription apparatus is a regulated two-component system in vitro
-
Shutt T.E., Lodeiro M.F., Cotney J., Cameron C.E., Shadel G.S. Core human mitochondrial transcription apparatus is a regulated two-component system in vitro. Proc. Natl. Acad. Sci. U. S. A. 2010, 107:12133-12138.
-
(2010)
Proc. Natl. Acad. Sci. U. S. A.
, vol.107
, pp. 12133-12138
-
-
Shutt, T.E.1
Lodeiro, M.F.2
Cotney, J.3
Cameron, C.E.4
Shadel, G.S.5
-
31
-
-
0025912955
-
A close relative of the nuclear, chromosomal high-mobility group protein HMG1 in yeast mitochondria
-
Diffley J.F., Stillman B. A close relative of the nuclear, chromosomal high-mobility group protein HMG1 in yeast mitochondria. Proc. Natl. Acad. Sci. U. S. A. 1991, 88:7864-7868.
-
(1991)
Proc. Natl. Acad. Sci. U. S. A.
, vol.88
, pp. 7864-7868
-
-
Diffley, J.F.1
Stillman, B.2
-
32
-
-
79952461851
-
The core human mitochondrial transcription initiation complex: It only takes two to tango
-
Shutt T.E., Bestwick M., Shadel G.S. The core human mitochondrial transcription initiation complex: It only takes two to tango. Transcription 2011, 2:55-59.
-
(2011)
Transcription
, vol.2
, pp. 55-59
-
-
Shutt, T.E.1
Bestwick, M.2
Shadel, G.S.3
-
33
-
-
0033646639
-
Transcription and replication of mitochondrial DNA
-
Clayton D.A. Transcription and replication of mitochondrial DNA. Hum. Reprod. 2000, 15(Suppl. 2):11-17.
-
(2000)
Hum. Reprod.
, vol.15
, Issue.SUPPL. 2
, pp. 11-17
-
-
Clayton, D.A.1
-
34
-
-
0027462374
-
Mitochondrial transcription: is a pattern emerging?
-
Jaehning J.A. Mitochondrial transcription: is a pattern emerging?. Mol. Microbiol. 1993, 8:1-4.
-
(1993)
Mol. Microbiol.
, vol.8
, pp. 1-4
-
-
Jaehning, J.A.1
-
35
-
-
33847792061
-
Mitochondrial transcription and its regulation in mammalian cells
-
Asin-Cayuela J., Gustafsson C.M. Mitochondrial transcription and its regulation in mammalian cells. Trends Biochem. Sci. 2007, 32:111-117.
-
(2007)
Trends Biochem. Sci.
, vol.32
, pp. 111-117
-
-
Asin-Cayuela, J.1
Gustafsson, C.M.2
-
36
-
-
77950491013
-
Mitochondrial transcription factor Mtf1 traps the unwound non-template strand to facilitate open complex formation
-
Paratkar S., Patel S.S. Mitochondrial transcription factor Mtf1 traps the unwound non-template strand to facilitate open complex formation. J. Biol. Chem. 2010, 285:3949-3956.
-
(2010)
J. Biol. Chem.
, vol.285
, pp. 3949-3956
-
-
Paratkar, S.1
Patel, S.S.2
-
37
-
-
67649412013
-
A promoter recognition mechanism common to yeast mitochondrial and phage t7 RNA polymerases
-
Nayak D., Guo Q., Sousa R. A promoter recognition mechanism common to yeast mitochondrial and phage t7 RNA polymerases. J. Biol. Chem. 2009, 284:13641-13647.
-
(2009)
J. Biol. Chem.
, vol.284
, pp. 13641-13647
-
-
Nayak, D.1
Guo, Q.2
Sousa, R.3
-
38
-
-
80054015954
-
Structure of human mitochondrial RNA polymerase
-
Ringel R., Sologub M., Morozov Y.I., Litonin D., Cramer P., Temiakov D. Structure of human mitochondrial RNA polymerase. Nature 2011, 478:269-273.
-
(2011)
Nature
, vol.478
, pp. 269-273
-
-
Ringel, R.1
Sologub, M.2
Morozov, Y.I.3
Litonin, D.4
Cramer, P.5
Temiakov, D.6
-
39
-
-
79955542547
-
The N-terminal domain of the yeast mitochondrial RNA polymerase regulates multiple steps of transcription
-
Paratkar S., Deshpande A.P., Tang G.Q., Patel S.S. The N-terminal domain of the yeast mitochondrial RNA polymerase regulates multiple steps of transcription. J. Biol. Chem. 2011, 286:16109-16120.
-
(2011)
J. Biol. Chem.
, vol.286
, pp. 16109-16120
-
-
Paratkar, S.1
Deshpande, A.P.2
Tang, G.Q.3
Patel, S.S.4
-
40
-
-
0033529089
-
Structural basis for initiation of transcription from an RNA polymerase-promoter complex
-
Cheetham G.M., Jeruzalmi D., Steitz T.A. Structural basis for initiation of transcription from an RNA polymerase-promoter complex. Nature 1999, 399:80-83.
-
(1999)
Nature
, vol.399
, pp. 80-83
-
-
Cheetham, G.M.1
Jeruzalmi, D.2
Steitz, T.A.3
-
41
-
-
0033579380
-
Structure of a transcribing T7 RNA polymerase initiation complex
-
Cheetham G.M., Steitz T.A. Structure of a transcribing T7 RNA polymerase initiation complex. Science 1999, 286:2305-2309.
-
(1999)
Science
, vol.286
, pp. 2305-2309
-
-
Cheetham, G.M.1
Steitz, T.A.2
-
42
-
-
0347717870
-
A mutation in the yeast mitochondrial core RNA polymerase, Rpo41, confers defects in both specificity factor interaction and promoter utilization
-
Matsunaga M., Jaehning J.A. A mutation in the yeast mitochondrial core RNA polymerase, Rpo41, confers defects in both specificity factor interaction and promoter utilization. J. Biol. Chem. 2004, 279:2012-2019.
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 2012-2019
-
-
Matsunaga, M.1
Jaehning, J.A.2
-
43
-
-
0037038361
-
Structure of a T7 RNA polymerase elongation complex at 2.9A resolution
-
Tahirov T.H., Temiakov D., Anikin M., Patlan V., McAllister W.T., Vassylyev D.G., Yokoyama S. Structure of a T7 RNA polymerase elongation complex at 2.9A resolution. Nature 2002, 420:43-50.
-
(2002)
Nature
, vol.420
, pp. 43-50
-
-
Tahirov, T.H.1
Temiakov, D.2
Anikin, M.3
Patlan, V.4
McAllister, W.T.5
Vassylyev, D.G.6
Yokoyama, S.7
-
44
-
-
0037112082
-
Structural basis for the transition from initiation to elongation transcription in T7 RNA polymerase
-
Yin Y.W., Steitz T.A. Structural basis for the transition from initiation to elongation transcription in T7 RNA polymerase. Science 2002, 298:1387-1395.
-
(2002)
Science
, vol.298
, pp. 1387-1395
-
-
Yin, Y.W.1
Steitz, T.A.2
-
45
-
-
25144515314
-
Major conformational changes during T7RNAP transcription initiation coincide with, and are required for, promoter release
-
Guo Q., Nayak D., Brieba L.G., Sousa R. Major conformational changes during T7RNAP transcription initiation coincide with, and are required for, promoter release. J. Mol. Biol. 2005, 353:256-270.
-
(2005)
J. Mol. Biol.
, vol.353
, pp. 256-270
-
-
Guo, Q.1
Nayak, D.2
Brieba, L.G.3
Sousa, R.4
-
46
-
-
33645097171
-
Translocation by T7 RNA polymerase: a sensitively poised Brownian ratchet
-
Guo Q., Sousa R. Translocation by T7 RNA polymerase: a sensitively poised Brownian ratchet. J. Mol. Biol. 2006, 358:241-254.
-
(2006)
J. Mol. Biol.
, vol.358
, pp. 241-254
-
-
Guo, Q.1
Sousa, R.2
-
47
-
-
70549112913
-
The structural changes of T7 RNA polymerase from transcription initiation to elongation
-
Steitz T.A. The structural changes of T7 RNA polymerase from transcription initiation to elongation. Curr. Opin. Struct. Biol. 2009, 19:683-690.
-
(2009)
Curr. Opin. Struct. Biol.
, vol.19
, pp. 683-690
-
-
Steitz, T.A.1
-
48
-
-
0036308760
-
The intercalating beta-hairpin of T7 RNA polymerase plays a role in promoter DNA melting and in stabilizing the melted DNA for efficient RNA synthesis
-
Stano N.M., Patel S.S. The intercalating beta-hairpin of T7 RNA polymerase plays a role in promoter DNA melting and in stabilizing the melted DNA for efficient RNA synthesis. J. Mol. Biol. 2002, 315:1009-1025.
-
(2002)
J. Mol. Biol.
, vol.315
, pp. 1009-1025
-
-
Stano, N.M.1
Patel, S.S.2
-
49
-
-
0033529190
-
Stability of the mitochondrial genome requires an amino-terminal domain of yeast mitochondrial RNA polymerase
-
Wang Y., Shadel G.S. Stability of the mitochondrial genome requires an amino-terminal domain of yeast mitochondrial RNA polymerase. Proc. Natl. Acad. Sci. U. S. A. 1999, 96:8046-8051.
-
(1999)
Proc. Natl. Acad. Sci. U. S. A.
, vol.96
, pp. 8046-8051
-
-
Wang, Y.1
Shadel, G.S.2
-
50
-
-
0030813608
-
Identification of three regions essential for interaction between a sigma-like factor and core RNA polymerase
-
Cliften P.F., Park J.Y., Davis B.P., Jang S.H., Jaehning J.A. Identification of three regions essential for interaction between a sigma-like factor and core RNA polymerase. Genes Dev. 1997, 11:2897-2909.
-
(1997)
Genes Dev.
, vol.11
, pp. 2897-2909
-
-
Cliften, P.F.1
Park, J.Y.2
Davis, B.P.3
Jang, S.H.4
Jaehning, J.A.5
-
51
-
-
0038043207
-
Multiple interactions involving the amino-terminal domain of yeast mtRNA polymerase determine the efficiency of mitochondrial protein synthesis
-
Rodeheffer M.S., Shadel G.S. Multiple interactions involving the amino-terminal domain of yeast mtRNA polymerase determine the efficiency of mitochondrial protein synthesis. J. Biol. Chem. 2003, 278:18695-18701.
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 18695-18701
-
-
Rodeheffer, M.S.1
Shadel, G.S.2
-
52
-
-
0035896652
-
Nam1p, a protein involved in RNA processing and translation, is coupled to transcription through an interaction with yeast mitochondrial RNA polymerase
-
Rodeheffer M.S., Boone B.E., Bryan A.C., Shadel G.S. Nam1p, a protein involved in RNA processing and translation, is coupled to transcription through an interaction with yeast mitochondrial RNA polymerase. J. Biol. Chem. 2001, 276:8616-8622.
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 8616-8622
-
-
Rodeheffer, M.S.1
Boone, B.E.2
Bryan, A.C.3
Shadel, G.S.4
-
53
-
-
70349237510
-
Identification of proteins associated with the yeast mitochondrial RNA polymerase by tandem affinity purification
-
Markov D.A., Savkina M., Anikin M., Del Campo M., Ecker K., Lambowitz A.M., De Gnore J.P., McAllister W.T. Identification of proteins associated with the yeast mitochondrial RNA polymerase by tandem affinity purification. Yeast 2009, 26:423-440.
-
(2009)
Yeast
, vol.26
, pp. 423-440
-
-
Markov, D.A.1
Savkina, M.2
Anikin, M.3
Del Campo, M.4
Ecker, K.5
Lambowitz, A.M.6
De Gnore, J.P.7
McAllister, W.T.8
-
54
-
-
0023656064
-
Specificity factor of yeast mitochondrial RNA polymerase. Purification and interaction with core RNA polymerase
-
Schinkel A.H., Koerkamp M.J., Touw E.P., Tabak H.F. Specificity factor of yeast mitochondrial RNA polymerase. Purification and interaction with core RNA polymerase. J. Biol. Chem. 1987, 262:12785-12791.
-
(1987)
J. Biol. Chem.
, vol.262
, pp. 12785-12791
-
-
Schinkel, A.H.1
Koerkamp, M.J.2
Touw, E.P.3
Tabak, H.F.4
-
55
-
-
0026598146
-
Assignment of a yeast protein necessary for mitochondrial transcription initiation
-
Xu B., Clayton D.A. Assignment of a yeast protein necessary for mitochondrial transcription initiation. Nucleic Acids Res. 1992, 20:1053-1059.
-
(1992)
Nucleic Acids Res.
, vol.20
, pp. 1053-1059
-
-
Xu, B.1
Clayton, D.A.2
-
56
-
-
0025876118
-
The yeast mitochondrial RNA polymerase specificity factor, MTF1, is similar to bacterial sigma factors
-
Jang S.H., Jaehning J.A. The yeast mitochondrial RNA polymerase specificity factor, MTF1, is similar to bacterial sigma factors. J. Biol. Chem. 1991, 266:22671-22677.
-
(1991)
J. Biol. Chem.
, vol.266
, pp. 22671-22677
-
-
Jang, S.H.1
Jaehning, J.A.2
-
57
-
-
70449807055
-
TFB2 is a transient component of the catalytic site of the human mitochondrial RNA polymerase
-
Sologub M., Litonin D., Anikin M., Mustaev A., Temiakov D. TFB2 is a transient component of the catalytic site of the human mitochondrial RNA polymerase. Cell 2009, 139:934-944.
-
(2009)
Cell
, vol.139
, pp. 934-944
-
-
Sologub, M.1
Litonin, D.2
Anikin, M.3
Mustaev, A.4
Temiakov, D.5
-
58
-
-
0037071844
-
Crystal structure of a bacterial RNA polymerase holoenzyme at 2.6A resolution
-
Vassylyev D.G., Sekine S., Laptenko O., Lee J., Vassylyeva M.N., Borukhov S., Yokoyama S. Crystal structure of a bacterial RNA polymerase holoenzyme at 2.6A resolution. Nature 2002, 417:712-719.
-
(2002)
Nature
, vol.417
, pp. 712-719
-
-
Vassylyev, D.G.1
Sekine, S.2
Laptenko, O.3
Lee, J.4
Vassylyeva, M.N.5
Borukhov, S.6
Yokoyama, S.7
-
59
-
-
0034808120
-
Crystal structure of the transcription factor sc-mtTFB offers insights into mitochondrial transcription
-
Schubot F.D., Chen C.J., Rose J.P., Dailey T.A., Dailey H.A., Wang B.C. Crystal structure of the transcription factor sc-mtTFB offers insights into mitochondrial transcription. Protein Sci. 2001, 10:1980-1988.
-
(2001)
Protein Sci.
, vol.10
, pp. 1980-1988
-
-
Schubot, F.D.1
Chen, C.J.2
Rose, J.P.3
Dailey, T.A.4
Dailey, H.A.5
Wang, B.C.6
-
60
-
-
77950506170
-
Multiple functions of yeast mitochondrial transcription factor Mtf1p during initiation
-
Savkina M., Temiakov D., McAllister W.T., Anikin M. Multiple functions of yeast mitochondrial transcription factor Mtf1p during initiation. J. Biol. Chem. 2010, 285:3957-3964.
-
(2010)
J. Biol. Chem.
, vol.285
, pp. 3957-3964
-
-
Savkina, M.1
Temiakov, D.2
McAllister, W.T.3
Anikin, M.4
-
61
-
-
33751521683
-
Evidence for an early gene duplication event in the evolution of the mitochondrial transcription factor B family and maintenance of rRNA methyltransferase activity in human mtTFB1 and mtTFB2
-
Cotney J., Shadel G.S. Evidence for an early gene duplication event in the evolution of the mitochondrial transcription factor B family and maintenance of rRNA methyltransferase activity in human mtTFB1 and mtTFB2. J. Mol. Evol. 2006, 63:707-717.
-
(2006)
J. Mol. Evol.
, vol.63
, pp. 707-717
-
-
Cotney, J.1
Shadel, G.S.2
-
62
-
-
0028898897
-
A Saccharomyces cerevisiae mitochondrial transcription factor, sc-mtTFB, shares features with sigma factors but is functionally distinct
-
Shadel G.S., Clayton D.A. A Saccharomyces cerevisiae mitochondrial transcription factor, sc-mtTFB, shares features with sigma factors but is functionally distinct. Mol. Cell. Biol. 1995, 15:2101-2108.
-
(1995)
Mol. Cell. Biol.
, vol.15
, pp. 2101-2108
-
-
Shadel, G.S.1
Clayton, D.A.2
-
63
-
-
0027945504
-
Release of the yeast mitochondrial RNA polymerase specificity factor from transcription complexes
-
Mangus D.A., Jang S.H., Jaehning J.A. Release of the yeast mitochondrial RNA polymerase specificity factor from transcription complexes. J. Biol. Chem. 1994, 269:26568-26574.
-
(1994)
J. Biol. Chem.
, vol.269
, pp. 26568-26574
-
-
Mangus, D.A.1
Jang, S.H.2
Jaehning, J.A.3
-
64
-
-
0033811564
-
Identifying a core RNA polymerase surface critical for interactions with a sigma-like specificity factor
-
Cliften P.F., Jang S.H., Jaehning J.A. Identifying a core RNA polymerase surface critical for interactions with a sigma-like specificity factor. Mol. Cell. Biol. 2000, 20:7013-7023.
-
(2000)
Mol. Cell. Biol.
, vol.20
, pp. 7013-7023
-
-
Cliften, P.F.1
Jang, S.H.2
Jaehning, J.A.3
-
65
-
-
0021792319
-
Characterization of a yeast mitochondrial promoter by deletion mutagenesis
-
Biswas T.K., Edwards J.C., Rabinowitz M., Getz G.S. Characterization of a yeast mitochondrial promoter by deletion mutagenesis. Proc. Natl. Acad. Sci. U. S. A. 1985, 82:1954-1958.
-
(1985)
Proc. Natl. Acad. Sci. U. S. A.
, vol.82
, pp. 1954-1958
-
-
Biswas, T.K.1
Edwards, J.C.2
Rabinowitz, M.3
Getz, G.S.4
-
66
-
-
0022722226
-
Characterization of the promoter of the large ribosomal RNA gene in yeast mitochondria and separation of mitochondrial RNA polymerase into two different functional components
-
Schinkel A.H., Groot Koerkamp M.J., Van der Horst G.T., Touw E.P., Osinga K.A., Van der Bliek A.M., Veeneman G.H., Van Boom J.H., Tabak H.F. Characterization of the promoter of the large ribosomal RNA gene in yeast mitochondria and separation of mitochondrial RNA polymerase into two different functional components. EMBO J. 1986, 5:1041-1047.
-
(1986)
EMBO J.
, vol.5
, pp. 1041-1047
-
-
Schinkel, A.H.1
Groot Koerkamp, M.J.2
Van der Horst, G.T.3
Touw, E.P.4
Osinga, K.A.5
Van der Bliek, A.M.6
Veeneman, G.H.7
Van Boom, J.H.8
Tabak, H.F.9
-
67
-
-
0033609502
-
Nucleotide sequences surrounding the nonanucleotide promoter motif influence the activity of yeast mitochondrial promoter
-
Biswas T.K. Nucleotide sequences surrounding the nonanucleotide promoter motif influence the activity of yeast mitochondrial promoter. Biochemistry 1999, 38:9693-9703.
-
(1999)
Biochemistry
, vol.38
, pp. 9693-9703
-
-
Biswas, T.K.1
-
68
-
-
0023001709
-
In vitro transcription and promoter strength analysis of five mitochondrial tRNA promoters in yeast
-
Wettstein-Edwards J., Ticho B.S., Martin N.C., Najarian D., Getz G.S. In vitro transcription and promoter strength analysis of five mitochondrial tRNA promoters in yeast. J. Biol. Chem. 1986, 261:2905-2911.
-
(1986)
J. Biol. Chem.
, vol.261
, pp. 2905-2911
-
-
Wettstein-Edwards, J.1
Ticho, B.S.2
Martin, N.C.3
Najarian, D.4
Getz, G.S.5
-
69
-
-
0022541796
-
Nucleotides flanking the promoter sequence influence the transcription of the yeast mitochondrial gene coding for ATPase subunit 9
-
Biswas T.K., Getz G.S. Nucleotides flanking the promoter sequence influence the transcription of the yeast mitochondrial gene coding for ATPase subunit 9. Proc. Natl. Acad. Sci. U. S. A. 1986, 83:270-274.
-
(1986)
Proc. Natl. Acad. Sci. U. S. A.
, vol.83
, pp. 270-274
-
-
Biswas, T.K.1
Getz, G.S.2
-
70
-
-
0025027687
-
Regulation of transcriptional initiation in yeast mitochondria
-
Biswas T.K., Getz G.S. Regulation of transcriptional initiation in yeast mitochondria. J. Biol. Chem. 1990, 265:19053-19059.
-
(1990)
J. Biol. Chem.
, vol.265
, pp. 19053-19059
-
-
Biswas, T.K.1
Getz, G.S.2
-
71
-
-
0032496669
-
Usage of non-canonical promoter sequence by the yeast mitochondrial RNA polymerase
-
Biswas T.K. Usage of non-canonical promoter sequence by the yeast mitochondrial RNA polymerase. Gene 1998, 212:305-314.
-
(1998)
Gene
, vol.212
, pp. 305-314
-
-
Biswas, T.K.1
-
72
-
-
0022979289
-
A critical base in the yeast mitochondrial nonanucleotide promoter. Abolition of promoter activity by mutation at the -2 position
-
Biswas T.K., Getz G.S. A critical base in the yeast mitochondrial nonanucleotide promoter. Abolition of promoter activity by mutation at the -2 position. J. Biol. Chem. 1986, 261:3927-3930.
-
(1986)
J. Biol. Chem.
, vol.261
, pp. 3927-3930
-
-
Biswas, T.K.1
Getz, G.S.2
-
73
-
-
0023645707
-
In vitro characterization of the yeast mitochondrial promoter using single-base substitution mutants
-
Biswas T.K., Ticho B., Getz G.S. In vitro characterization of the yeast mitochondrial promoter using single-base substitution mutants. J. Biol. Chem. 1987, 262:13690-13696.
-
(1987)
J. Biol. Chem.
, vol.262
, pp. 13690-13696
-
-
Biswas, T.K.1
Ticho, B.2
Getz, G.S.3
-
74
-
-
0036435803
-
The energetics of consensus promoter opening by T7 RNA polymerase
-
Bandwar R.P., Patel S.S. The energetics of consensus promoter opening by T7 RNA polymerase. J. Mol. Biol. 2002, 324:63-72.
-
(2002)
J. Mol. Biol.
, vol.324
, pp. 63-72
-
-
Bandwar, R.P.1
Patel, S.S.2
-
75
-
-
80055070163
-
Transcription factor-dependent DNA bending governs promoter recognition by the mitochondrial RNA polymerase
-
Tang G.Q., Deshpande A.P., Patel S.S. Transcription factor-dependent DNA bending governs promoter recognition by the mitochondrial RNA polymerase. J. Biol. Chem. 2011, 286:38805-38813.
-
(2011)
J. Biol. Chem.
, vol.286
, pp. 38805-38813
-
-
Tang, G.Q.1
Deshpande, A.P.2
Patel, S.S.3
-
76
-
-
33645910849
-
T7 RNA polymerase-induced bending of promoter DNA is coupled to DNA opening
-
Tang G.Q., Patel S.S. T7 RNA polymerase-induced bending of promoter DNA is coupled to DNA opening. Biochemistry 2006, 45:4936-4946.
-
(2006)
Biochemistry
, vol.45
, pp. 4936-4946
-
-
Tang, G.Q.1
Patel, S.S.2
-
77
-
-
0347752416
-
Peculiar 2-aminopurine fluorescence monitors the dynamics of open complex formation by bacteriophage T7 RNA polymerase
-
Bandwar R.P., Patel S.S. Peculiar 2-aminopurine fluorescence monitors the dynamics of open complex formation by bacteriophage T7 RNA polymerase. J. Biol. Chem. 2001, 276:14075-14082.
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 14075-14082
-
-
Bandwar, R.P.1
Patel, S.S.2
-
78
-
-
65549097265
-
Fluorescence mapping of the open complex of yeast mitochondrial RNA polymerase
-
Tang G.Q., Paratkar S., Patel S.S. Fluorescence mapping of the open complex of yeast mitochondrial RNA polymerase. J. Biol. Chem. 2009, 284:5514-5522.
-
(2009)
J. Biol. Chem.
, vol.284
, pp. 5514-5522
-
-
Tang, G.Q.1
Paratkar, S.2
Patel, S.S.3
-
79
-
-
0035793105
-
2-Aminopurine fluorescence quenching and lifetimes: role of base stacking
-
Jean J.M., Hall K.B. 2-Aminopurine fluorescence quenching and lifetimes: role of base stacking. Proc. Natl. Acad. Sci. U. S. A. 2001, 98:37-41.
-
(2001)
Proc. Natl. Acad. Sci. U. S. A.
, vol.98
, pp. 37-41
-
-
Jean, J.M.1
Hall, K.B.2
-
80
-
-
0032529485
-
2-Aminopurine fluorescence studies of base stacking interactions at abasic sites in DNA: metal-ion and base sequence effects
-
Stivers J.T. 2-Aminopurine fluorescence studies of base stacking interactions at abasic sites in DNA: metal-ion and base sequence effects. Nucleic Acids Res. 1998, 26:3837-3844.
-
(1998)
Nucleic Acids Res.
, vol.26
, pp. 3837-3844
-
-
Stivers, J.T.1
-
81
-
-
84855273566
-
Opening-closing dynamics of the mitochondrial transcription pre-initiation complex
-
Kim H., Tang G.Q., Patel S.S., Ha T. Opening-closing dynamics of the mitochondrial transcription pre-initiation complex. Nucleic Acids Res. 2011, 40:371-380.
-
(2011)
Nucleic Acids Res.
, vol.40
, pp. 371-380
-
-
Kim, H.1
Tang, G.Q.2
Patel, S.S.3
Ha, T.4
-
82
-
-
7244232840
-
Intrinsic promoter recognition by a "core" RNA polymerase
-
Matsunaga M., Jaehning J.A. Intrinsic promoter recognition by a "core" RNA polymerase. J. Biol. Chem. 2004, 279:44239-44242.
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 44239-44242
-
-
Matsunaga, M.1
Jaehning, J.A.2
-
83
-
-
0037008697
-
Mutations in the yeast mitochondrial RNA polymerase specificity factor, Mtf1, verify an essential role in promoter utilization
-
Karlok M.A., Jang S.H., Jaehning J.A. Mutations in the yeast mitochondrial RNA polymerase specificity factor, Mtf1, verify an essential role in promoter utilization. J. Biol. Chem. 2002, 277:28143-28149.
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 28143-28149
-
-
Karlok, M.A.1
Jang, S.H.2
Jaehning, J.A.3
-
84
-
-
0037020232
-
The +2 NTP binding drives open complex formation in T7 RNA polymerase
-
Stano N.M., Levin M.K., Patel S.S. The +2 NTP binding drives open complex formation in T7 RNA polymerase. J. Biol. Chem. 2002, 277:37292-37300.
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 37292-37300
-
-
Stano, N.M.1
Levin, M.K.2
Patel, S.S.3
-
85
-
-
2442609748
-
Mechanism of stimulation of ribosomal promoters by binding of the +1 and +2 nucleotides
-
Lew C.M., Gralla J.D. Mechanism of stimulation of ribosomal promoters by binding of the +1 and +2 nucleotides. J. Biol. Chem. 2004, 279:19481-19485.
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 19481-19485
-
-
Lew, C.M.1
Gralla, J.D.2
-
86
-
-
33845963664
-
Sensitivity of the yeast mitochondrial RNA polymerase to +1 and +2 initiating nucleotides
-
Amiott E.A., Jaehning J.A. Sensitivity of the yeast mitochondrial RNA polymerase to +1 and +2 initiating nucleotides. J. Biol. Chem. 2006, 281:34982-34988.
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 34982-34988
-
-
Amiott, E.A.1
Jaehning, J.A.2
-
87
-
-
0022978145
-
Transcriptional regulation of the mitochondrial genome of yeast Saccharomyces cerevisiae
-
Mueller D.M., Getz G.S. Transcriptional regulation of the mitochondrial genome of yeast Saccharomyces cerevisiae. J. Biol. Chem. 1986, 261:11756-11764.
-
(1986)
J. Biol. Chem.
, vol.261
, pp. 11756-11764
-
-
Mueller, D.M.1
Getz, G.S.2
-
88
-
-
0025634027
-
Control of mitochondrial gene expression in the yeast Saccharomyces cerevisiae
-
Biswas T.K. Control of mitochondrial gene expression in the yeast Saccharomyces cerevisiae. Proc. Natl. Acad. Sci. U. S. A. 1990, 87:9338-9342.
-
(1990)
Proc. Natl. Acad. Sci. U. S. A.
, vol.87
, pp. 9338-9342
-
-
Biswas, T.K.1
-
89
-
-
0028287665
-
MTF1, encoding the yeast mitochondrial RNA polymerase specificity factor, is located on chromosome XIII
-
Ulery T.L., Jaehning J.A. MTF1, encoding the yeast mitochondrial RNA polymerase specificity factor, is located on chromosome XIII. Yeast 1994, 10:839-841.
-
(1994)
Yeast
, vol.10
, pp. 839-841
-
-
Ulery, T.L.1
Jaehning, J.A.2
-
90
-
-
33646163885
-
Mitochondrial transcription is regulated via an ATP "sensing" mechanism that couples RNA abundance to respiration
-
Amiott E.A., Jaehning J.A. Mitochondrial transcription is regulated via an ATP "sensing" mechanism that couples RNA abundance to respiration. Mol. Cell 2006, 22:329-338.
-
(2006)
Mol. Cell
, vol.22
, pp. 329-338
-
-
Amiott, E.A.1
Jaehning, J.A.2
-
91
-
-
0029116754
-
Mitochondrial transcription initiation: promoter structures and RNA polymerases
-
Tracy R.L., Stern D.B. Mitochondrial transcription initiation: promoter structures and RNA polymerases. Curr. Genet. 1995, 28:205-216.
-
(1995)
Curr. Genet.
, vol.28
, pp. 205-216
-
-
Tracy, R.L.1
Stern, D.B.2
-
92
-
-
33644693613
-
Structure and function in promoter escape by T7 RNA polymerase
-
Martin C.T., Esposito E.A., Theis K., Gong P. Structure and function in promoter escape by T7 RNA polymerase. Prog. Nucleic Acid Res. Mol. Biol. 2005, 80:323-347.
-
(2005)
Prog. Nucleic Acid Res. Mol. Biol.
, vol.80
, pp. 323-347
-
-
Martin, C.T.1
Esposito, E.A.2
Theis, K.3
Gong, P.4
-
93
-
-
0037133504
-
Kinetic and thermodynamic basis of promoter strength: multiple steps of transcription initiation by T7 RNA polymerase are modulated by the promoter sequence
-
Bandwar R.P., Jia Y., Stano N.M., Patel S.S. Kinetic and thermodynamic basis of promoter strength: multiple steps of transcription initiation by T7 RNA polymerase are modulated by the promoter sequence. Biochemistry 2002, 41:3586-3595.
-
(2002)
Biochemistry
, vol.41
, pp. 3586-3595
-
-
Bandwar, R.P.1
Jia, Y.2
Stano, N.M.3
Patel, S.S.4
-
94
-
-
33745232330
-
Sequential release of promoter contacts during transcription initiation to elongation transition
-
Bandwar R.P., Tang G.Q., Patel S.S. Sequential release of promoter contacts during transcription initiation to elongation transition. J. Mol. Biol. 2006, 360:466-483.
-
(2006)
J. Mol. Biol.
, vol.360
, pp. 466-483
-
-
Bandwar, R.P.1
Tang, G.Q.2
Patel, S.S.3
-
95
-
-
0026720389
-
Transcriptional commitment of mitochondrial RNA polymerase from Saccharomyces cerevisiae
-
Biswas T.K. Transcriptional commitment of mitochondrial RNA polymerase from Saccharomyces cerevisiae. J. Mol. Biol. 1992, 226:335-347.
-
(1992)
J. Mol. Biol.
, vol.226
, pp. 335-347
-
-
Biswas, T.K.1
-
96
-
-
4944262080
-
Initial bubble collapse plays a key role in the transition to elongation in T7 RNA polymerase
-
Gong P., Esposito E.A., Martin C.T. Initial bubble collapse plays a key role in the transition to elongation in T7 RNA polymerase. J. Biol. Chem. 2004, 279:44277-44285.
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 44277-44285
-
-
Gong, P.1
Esposito, E.A.2
Martin, C.T.3
-
97
-
-
33747621427
-
Visualizing polynucleotide polymerase machines at work
-
Steitz T.A. Visualizing polynucleotide polymerase machines at work. EMBO J. 2006, 25:3458-3468.
-
(2006)
EMBO J.
, vol.25
, pp. 3458-3468
-
-
Steitz, T.A.1
-
98
-
-
34249681855
-
Twisted or shifted? Fluorescence measurements of late intermediates in transcription initiation by T7 RNA polymerase
-
Turingan R.S., Theis K., Martin C.T. Twisted or shifted? Fluorescence measurements of late intermediates in transcription initiation by T7 RNA polymerase. Biochemistry 2007, 46:6165-6168.
-
(2007)
Biochemistry
, vol.46
, pp. 6165-6168
-
-
Turingan, R.S.1
Theis, K.2
Martin, C.T.3
|