메뉴 건너뛰기




Volumn 1819, Issue 9-10, 2012, Pages 930-938

Mechanism of transcription initiation by the yeast mitochondrial RNA polymerase

Author keywords

Mitochondrial DNA transcription; Mitochondrial RNA polymerase; Mtf1; Rpo41

Indexed keywords

ADENOSINE TRIPHOSPHATE; MITOCHONDRIAL RNA; MITOCHONDRIAL TRANSCRIPTION FACTOR 1; MITOCHONDRIAL TRANSCRIPTION FACTOR A; MITOCHONDRIAL TRANSCRIPTION FACTOR B; RNA POLYMERASE; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR RPO41; UNCLASSIFIED DRUG;

EID: 84864322378     PISSN: 18749399     EISSN: 18764320     Source Type: Journal    
DOI: 10.1016/j.bbagrm.2012.02.003     Document Type: Review
Times cited : (32)

References (98)
  • 1
    • 67651159365 scopus 로고    scopus 로고
    • Transcriptional control of mitochondrial biogenesis and function
    • Hock M.B., Kralli A. Transcriptional control of mitochondrial biogenesis and function. Annu. Rev. Physiol. 2009, 71:177-203.
    • (2009) Annu. Rev. Physiol. , vol.71 , pp. 177-203
    • Hock, M.B.1    Kralli, A.2
  • 2
    • 78149408058 scopus 로고    scopus 로고
    • Empowering self-renewal and differentiation: the role of mitochondria in stem cells
    • Rehman J. Empowering self-renewal and differentiation: the role of mitochondria in stem cells. J. Mol. Med. (Berl.) 2010, 88:981-986.
    • (2010) J. Mol. Med. (Berl.) , vol.88 , pp. 981-986
    • Rehman, J.1
  • 3
    • 79960230433 scopus 로고    scopus 로고
    • Mitochondria in apoptosis: Bcl-2 family members and mitochondrial dynamics
    • Martinou J.C., Youle R.J. Mitochondria in apoptosis: Bcl-2 family members and mitochondrial dynamics. Dev. Cell 2011, 21:92-101.
    • (2011) Dev. Cell , vol.21 , pp. 92-101
    • Martinou, J.C.1    Youle, R.J.2
  • 4
    • 79959505900 scopus 로고    scopus 로고
    • Molecules and roles of mitochondrial calcium signaling
    • Mammucari C., Patron M., Granatiero V., Rizzuto R. Molecules and roles of mitochondrial calcium signaling. Biofactors 2011, 37:219-227.
    • (2011) Biofactors , vol.37 , pp. 219-227
    • Mammucari, C.1    Patron, M.2    Granatiero, V.3    Rizzuto, R.4
  • 6
    • 77953507107 scopus 로고    scopus 로고
    • Mitochondrial DNA mutations in disease and aging
    • Wallace D.C. Mitochondrial DNA mutations in disease and aging. Environ. Mol. Mutagen. 2010, 51:440-450.
    • (2010) Environ. Mol. Mutagen. , vol.51 , pp. 440-450
    • Wallace, D.C.1
  • 7
    • 77953360335 scopus 로고    scopus 로고
    • Animal models of mitochondrial DNA transactions in disease and ageing
    • Oliveira M.T., Garesse R., Kaguni L.S. Animal models of mitochondrial DNA transactions in disease and ageing. Exp. Gerontol. 2010, 45:489-502.
    • (2010) Exp. Gerontol. , vol.45 , pp. 489-502
    • Oliveira, M.T.1    Garesse, R.2    Kaguni, L.S.3
  • 8
    • 77953529585 scopus 로고    scopus 로고
    • A compendium of human mitochondrial gene expression machinery with links to disease
    • Shutt T.E., Shadel G.S. A compendium of human mitochondrial gene expression machinery with links to disease. Environ. Mol. Mutagen. 2010, 51:360-379.
    • (2010) Environ. Mol. Mutagen. , vol.51 , pp. 360-379
    • Shutt, T.E.1    Shadel, G.S.2
  • 9
    • 44849128599 scopus 로고    scopus 로고
    • Expression and maintenance of mitochondrial DNA: new insights into human disease pathology
    • Shadel G.S. Expression and maintenance of mitochondrial DNA: new insights into human disease pathology. Am. J. Pathol. 2008, 172:1445-1456.
    • (2008) Am. J. Pathol. , vol.172 , pp. 1445-1456
    • Shadel, G.S.1
  • 10
    • 79959450877 scopus 로고    scopus 로고
    • Mitochondrial DNA mutations in disease and aging
    • Park C.B., Larsson N.G. Mitochondrial DNA mutations in disease and aging. J. Cell Biol. 2011, 193:809-818.
    • (2011) J. Cell Biol. , vol.193 , pp. 809-818
    • Park, C.B.1    Larsson, N.G.2
  • 11
    • 79960555933 scopus 로고    scopus 로고
    • Human diseases with impaired mitochondrial protein synthesis
    • Rotig A. Human diseases with impaired mitochondrial protein synthesis. Biochim. Biophys. Acta 2011, 1807:1198-1205.
    • (2011) Biochim. Biophys. Acta , vol.1807 , pp. 1198-1205
    • Rotig, A.1
  • 13
    • 0033367329 scopus 로고    scopus 로고
    • Mitochondrial genome evolution and the origin of eukaryotes
    • Lang B.F., Gray M.W., Burger G. Mitochondrial genome evolution and the origin of eukaryotes. Annu. Rev. Genet. 1999, 33:351-397.
    • (1999) Annu. Rev. Genet. , vol.33 , pp. 351-397
    • Lang, B.F.1    Gray, M.W.2    Burger, G.3
  • 14
    • 0033525788 scopus 로고    scopus 로고
    • Mitochondrial evolution
    • Gray M.W., Burger G., Lang B.F. Mitochondrial evolution. Science 1999, 283:1476-1481.
    • (1999) Science , vol.283 , pp. 1476-1481
    • Gray, M.W.1    Burger, G.2    Lang, B.F.3
  • 15
    • 1842429937 scopus 로고    scopus 로고
    • Ancient invasions: from endosymbionts to organelles
    • Dyall S.D., Brown M.T., Johnson P.J. Ancient invasions: from endosymbionts to organelles. Science 2004, 304:253-257.
    • (2004) Science , vol.304 , pp. 253-257
    • Dyall, S.D.1    Brown, M.T.2    Johnson, P.J.3
  • 16
    • 0023649273 scopus 로고
    • Yeast mitochondrial RNA polymerase is homologous to those encoded by bacteriophages T3 and T7
    • Masters B.S., Stohl L.L., Clayton D.A. Yeast mitochondrial RNA polymerase is homologous to those encoded by bacteriophages T3 and T7. Cell 1987, 51:89-99.
    • (1987) Cell , vol.51 , pp. 89-99
    • Masters, B.S.1    Stohl, L.L.2    Clayton, D.A.3
  • 17
    • 0029866234 scopus 로고    scopus 로고
    • Sequences homologous to yeast mitochondrial and bacteriophage T3 and T7 RNA polymerases are widespread throughout the eukaryotic lineage
    • Cermakian N., Ikeda T.M., Cedergren R., Gray M.W. Sequences homologous to yeast mitochondrial and bacteriophage T3 and T7 RNA polymerases are widespread throughout the eukaryotic lineage. Nucleic Acids Res. 1996, 24:648-654.
    • (1996) Nucleic Acids Res. , vol.24 , pp. 648-654
    • Cermakian, N.1    Ikeda, T.M.2    Cedergren, R.3    Gray, M.W.4
  • 19
    • 33845744837 scopus 로고    scopus 로고
    • Initiation and beyond: multiple functions of the human mitochondrial transcription machinery
    • Bonawitz N.D., Clayton D.A., Shadel G.S. Initiation and beyond: multiple functions of the human mitochondrial transcription machinery. Mol. Cell 2006, 24:813-825.
    • (2006) Mol. Cell , vol.24 , pp. 813-825
    • Bonawitz, N.D.1    Clayton, D.A.2    Shadel, G.S.3
  • 20
    • 0024094284 scopus 로고
    • Mitochondrial RNA polymerase of Saccharomyces cerevisiae: composition and mechanism of promoter recognition
    • Schinkel A.H., Groot Koerkamp M.J., Tabak H.F. Mitochondrial RNA polymerase of Saccharomyces cerevisiae: composition and mechanism of promoter recognition. EMBO J. 1988, 7:3255-3262.
    • (1988) EMBO J. , vol.7 , pp. 3255-3262
    • Schinkel, A.H.1    Groot Koerkamp, M.J.2    Tabak, H.F.3
  • 21
    • 79960251405 scopus 로고    scopus 로고
    • Identification and characterization of the mitochondrial RNA polymerase and transcription factor in the fission yeast Schizosaccharomyces pombe
    • Jiang H., Sun W., Wang Z., Zhang J., Chen D., Murchie A.I. Identification and characterization of the mitochondrial RNA polymerase and transcription factor in the fission yeast Schizosaccharomyces pombe. Nucleic Acids Res. 2011, 39:5119-5130.
    • (2011) Nucleic Acids Res. , vol.39 , pp. 5119-5130
    • Jiang, H.1    Sun, W.2    Wang, Z.3    Zhang, J.4    Chen, D.5    Murchie, A.I.6
  • 22
    • 0036909437 scopus 로고    scopus 로고
    • Multi-protein complexes in eukaryotic gene transcription
    • Martinez E. Multi-protein complexes in eukaryotic gene transcription. Plant Mol. Biol. 2002, 50:925-947.
    • (2002) Plant Mol. Biol. , vol.50 , pp. 925-947
    • Martinez, E.1
  • 23
    • 0035394633 scopus 로고    scopus 로고
    • Comparison of the RNA polymerase III transcription machinery in Schizosaccharomyces pombe, Saccharomyces cerevisiae and human
    • Huang Y., Maraia R.J. Comparison of the RNA polymerase III transcription machinery in Schizosaccharomyces pombe, Saccharomyces cerevisiae and human. Nucleic Acids Res. 2001, 29:2675-2690.
    • (2001) Nucleic Acids Res. , vol.29 , pp. 2675-2690
    • Huang, Y.1    Maraia, R.J.2
  • 25
    • 0036840677 scopus 로고    scopus 로고
    • Role of the RNA polymerase sigma subunit in transcription initiation
    • Borukhov S., Severinov K. Role of the RNA polymerase sigma subunit in transcription initiation. Res. Microbiol. 2002, 153:557-562.
    • (2002) Res. Microbiol. , vol.153 , pp. 557-562
    • Borukhov, S.1    Severinov, K.2
  • 26
    • 7244233311 scopus 로고    scopus 로고
    • Expression and purification of wild type and mutant forms of the yeast mitochondrial core RNA polymerase, Rpo41
    • Matsunaga M., Jang S.H., Jaehning J.A. Expression and purification of wild type and mutant forms of the yeast mitochondrial core RNA polymerase, Rpo41. Protein Expr. Purif. 2004, 35:126-130.
    • (2004) Protein Expr. Purif. , vol.35 , pp. 126-130
    • Matsunaga, M.1    Jang, S.H.2    Jaehning, J.A.3
  • 27
    • 0019512473 scopus 로고
    • Mitochondrial transcription complex from Saccharomyces cerevisiae
    • Levens D., Morimoto R., Rabinowitz M. Mitochondrial transcription complex from Saccharomyces cerevisiae. J. Biol. Chem. 1981, 256:1466-1472.
    • (1981) J. Biol. Chem. , vol.256 , pp. 1466-1472
    • Levens, D.1    Morimoto, R.2    Rabinowitz, M.3
  • 29
    • 0036148610 scopus 로고    scopus 로고
    • A human mitochondrial transcription factor is related to RNA adenine methyltransferases and binds S-adenosylmethionine
    • McCulloch V., Seidel-Rogol B.L., Shadel G.S. A human mitochondrial transcription factor is related to RNA adenine methyltransferases and binds S-adenosylmethionine. Mol. Cell. Biol. 2002, 22:1116-1125.
    • (2002) Mol. Cell. Biol. , vol.22 , pp. 1116-1125
    • McCulloch, V.1    Seidel-Rogol, B.L.2    Shadel, G.S.3
  • 30
  • 31
    • 0025912955 scopus 로고
    • A close relative of the nuclear, chromosomal high-mobility group protein HMG1 in yeast mitochondria
    • Diffley J.F., Stillman B. A close relative of the nuclear, chromosomal high-mobility group protein HMG1 in yeast mitochondria. Proc. Natl. Acad. Sci. U. S. A. 1991, 88:7864-7868.
    • (1991) Proc. Natl. Acad. Sci. U. S. A. , vol.88 , pp. 7864-7868
    • Diffley, J.F.1    Stillman, B.2
  • 32
    • 79952461851 scopus 로고    scopus 로고
    • The core human mitochondrial transcription initiation complex: It only takes two to tango
    • Shutt T.E., Bestwick M., Shadel G.S. The core human mitochondrial transcription initiation complex: It only takes two to tango. Transcription 2011, 2:55-59.
    • (2011) Transcription , vol.2 , pp. 55-59
    • Shutt, T.E.1    Bestwick, M.2    Shadel, G.S.3
  • 33
    • 0033646639 scopus 로고    scopus 로고
    • Transcription and replication of mitochondrial DNA
    • Clayton D.A. Transcription and replication of mitochondrial DNA. Hum. Reprod. 2000, 15(Suppl. 2):11-17.
    • (2000) Hum. Reprod. , vol.15 , Issue.SUPPL. 2 , pp. 11-17
    • Clayton, D.A.1
  • 34
    • 0027462374 scopus 로고
    • Mitochondrial transcription: is a pattern emerging?
    • Jaehning J.A. Mitochondrial transcription: is a pattern emerging?. Mol. Microbiol. 1993, 8:1-4.
    • (1993) Mol. Microbiol. , vol.8 , pp. 1-4
    • Jaehning, J.A.1
  • 35
    • 33847792061 scopus 로고    scopus 로고
    • Mitochondrial transcription and its regulation in mammalian cells
    • Asin-Cayuela J., Gustafsson C.M. Mitochondrial transcription and its regulation in mammalian cells. Trends Biochem. Sci. 2007, 32:111-117.
    • (2007) Trends Biochem. Sci. , vol.32 , pp. 111-117
    • Asin-Cayuela, J.1    Gustafsson, C.M.2
  • 36
    • 77950491013 scopus 로고    scopus 로고
    • Mitochondrial transcription factor Mtf1 traps the unwound non-template strand to facilitate open complex formation
    • Paratkar S., Patel S.S. Mitochondrial transcription factor Mtf1 traps the unwound non-template strand to facilitate open complex formation. J. Biol. Chem. 2010, 285:3949-3956.
    • (2010) J. Biol. Chem. , vol.285 , pp. 3949-3956
    • Paratkar, S.1    Patel, S.S.2
  • 37
    • 67649412013 scopus 로고    scopus 로고
    • A promoter recognition mechanism common to yeast mitochondrial and phage t7 RNA polymerases
    • Nayak D., Guo Q., Sousa R. A promoter recognition mechanism common to yeast mitochondrial and phage t7 RNA polymerases. J. Biol. Chem. 2009, 284:13641-13647.
    • (2009) J. Biol. Chem. , vol.284 , pp. 13641-13647
    • Nayak, D.1    Guo, Q.2    Sousa, R.3
  • 39
    • 79955542547 scopus 로고    scopus 로고
    • The N-terminal domain of the yeast mitochondrial RNA polymerase regulates multiple steps of transcription
    • Paratkar S., Deshpande A.P., Tang G.Q., Patel S.S. The N-terminal domain of the yeast mitochondrial RNA polymerase regulates multiple steps of transcription. J. Biol. Chem. 2011, 286:16109-16120.
    • (2011) J. Biol. Chem. , vol.286 , pp. 16109-16120
    • Paratkar, S.1    Deshpande, A.P.2    Tang, G.Q.3    Patel, S.S.4
  • 40
    • 0033529089 scopus 로고    scopus 로고
    • Structural basis for initiation of transcription from an RNA polymerase-promoter complex
    • Cheetham G.M., Jeruzalmi D., Steitz T.A. Structural basis for initiation of transcription from an RNA polymerase-promoter complex. Nature 1999, 399:80-83.
    • (1999) Nature , vol.399 , pp. 80-83
    • Cheetham, G.M.1    Jeruzalmi, D.2    Steitz, T.A.3
  • 41
    • 0033579380 scopus 로고    scopus 로고
    • Structure of a transcribing T7 RNA polymerase initiation complex
    • Cheetham G.M., Steitz T.A. Structure of a transcribing T7 RNA polymerase initiation complex. Science 1999, 286:2305-2309.
    • (1999) Science , vol.286 , pp. 2305-2309
    • Cheetham, G.M.1    Steitz, T.A.2
  • 42
    • 0347717870 scopus 로고    scopus 로고
    • A mutation in the yeast mitochondrial core RNA polymerase, Rpo41, confers defects in both specificity factor interaction and promoter utilization
    • Matsunaga M., Jaehning J.A. A mutation in the yeast mitochondrial core RNA polymerase, Rpo41, confers defects in both specificity factor interaction and promoter utilization. J. Biol. Chem. 2004, 279:2012-2019.
    • (2004) J. Biol. Chem. , vol.279 , pp. 2012-2019
    • Matsunaga, M.1    Jaehning, J.A.2
  • 44
    • 0037112082 scopus 로고    scopus 로고
    • Structural basis for the transition from initiation to elongation transcription in T7 RNA polymerase
    • Yin Y.W., Steitz T.A. Structural basis for the transition from initiation to elongation transcription in T7 RNA polymerase. Science 2002, 298:1387-1395.
    • (2002) Science , vol.298 , pp. 1387-1395
    • Yin, Y.W.1    Steitz, T.A.2
  • 45
    • 25144515314 scopus 로고    scopus 로고
    • Major conformational changes during T7RNAP transcription initiation coincide with, and are required for, promoter release
    • Guo Q., Nayak D., Brieba L.G., Sousa R. Major conformational changes during T7RNAP transcription initiation coincide with, and are required for, promoter release. J. Mol. Biol. 2005, 353:256-270.
    • (2005) J. Mol. Biol. , vol.353 , pp. 256-270
    • Guo, Q.1    Nayak, D.2    Brieba, L.G.3    Sousa, R.4
  • 46
    • 33645097171 scopus 로고    scopus 로고
    • Translocation by T7 RNA polymerase: a sensitively poised Brownian ratchet
    • Guo Q., Sousa R. Translocation by T7 RNA polymerase: a sensitively poised Brownian ratchet. J. Mol. Biol. 2006, 358:241-254.
    • (2006) J. Mol. Biol. , vol.358 , pp. 241-254
    • Guo, Q.1    Sousa, R.2
  • 47
    • 70549112913 scopus 로고    scopus 로고
    • The structural changes of T7 RNA polymerase from transcription initiation to elongation
    • Steitz T.A. The structural changes of T7 RNA polymerase from transcription initiation to elongation. Curr. Opin. Struct. Biol. 2009, 19:683-690.
    • (2009) Curr. Opin. Struct. Biol. , vol.19 , pp. 683-690
    • Steitz, T.A.1
  • 48
    • 0036308760 scopus 로고    scopus 로고
    • The intercalating beta-hairpin of T7 RNA polymerase plays a role in promoter DNA melting and in stabilizing the melted DNA for efficient RNA synthesis
    • Stano N.M., Patel S.S. The intercalating beta-hairpin of T7 RNA polymerase plays a role in promoter DNA melting and in stabilizing the melted DNA for efficient RNA synthesis. J. Mol. Biol. 2002, 315:1009-1025.
    • (2002) J. Mol. Biol. , vol.315 , pp. 1009-1025
    • Stano, N.M.1    Patel, S.S.2
  • 49
    • 0033529190 scopus 로고    scopus 로고
    • Stability of the mitochondrial genome requires an amino-terminal domain of yeast mitochondrial RNA polymerase
    • Wang Y., Shadel G.S. Stability of the mitochondrial genome requires an amino-terminal domain of yeast mitochondrial RNA polymerase. Proc. Natl. Acad. Sci. U. S. A. 1999, 96:8046-8051.
    • (1999) Proc. Natl. Acad. Sci. U. S. A. , vol.96 , pp. 8046-8051
    • Wang, Y.1    Shadel, G.S.2
  • 50
    • 0030813608 scopus 로고    scopus 로고
    • Identification of three regions essential for interaction between a sigma-like factor and core RNA polymerase
    • Cliften P.F., Park J.Y., Davis B.P., Jang S.H., Jaehning J.A. Identification of three regions essential for interaction between a sigma-like factor and core RNA polymerase. Genes Dev. 1997, 11:2897-2909.
    • (1997) Genes Dev. , vol.11 , pp. 2897-2909
    • Cliften, P.F.1    Park, J.Y.2    Davis, B.P.3    Jang, S.H.4    Jaehning, J.A.5
  • 51
    • 0038043207 scopus 로고    scopus 로고
    • Multiple interactions involving the amino-terminal domain of yeast mtRNA polymerase determine the efficiency of mitochondrial protein synthesis
    • Rodeheffer M.S., Shadel G.S. Multiple interactions involving the amino-terminal domain of yeast mtRNA polymerase determine the efficiency of mitochondrial protein synthesis. J. Biol. Chem. 2003, 278:18695-18701.
    • (2003) J. Biol. Chem. , vol.278 , pp. 18695-18701
    • Rodeheffer, M.S.1    Shadel, G.S.2
  • 52
    • 0035896652 scopus 로고    scopus 로고
    • Nam1p, a protein involved in RNA processing and translation, is coupled to transcription through an interaction with yeast mitochondrial RNA polymerase
    • Rodeheffer M.S., Boone B.E., Bryan A.C., Shadel G.S. Nam1p, a protein involved in RNA processing and translation, is coupled to transcription through an interaction with yeast mitochondrial RNA polymerase. J. Biol. Chem. 2001, 276:8616-8622.
    • (2001) J. Biol. Chem. , vol.276 , pp. 8616-8622
    • Rodeheffer, M.S.1    Boone, B.E.2    Bryan, A.C.3    Shadel, G.S.4
  • 54
    • 0023656064 scopus 로고
    • Specificity factor of yeast mitochondrial RNA polymerase. Purification and interaction with core RNA polymerase
    • Schinkel A.H., Koerkamp M.J., Touw E.P., Tabak H.F. Specificity factor of yeast mitochondrial RNA polymerase. Purification and interaction with core RNA polymerase. J. Biol. Chem. 1987, 262:12785-12791.
    • (1987) J. Biol. Chem. , vol.262 , pp. 12785-12791
    • Schinkel, A.H.1    Koerkamp, M.J.2    Touw, E.P.3    Tabak, H.F.4
  • 55
    • 0026598146 scopus 로고
    • Assignment of a yeast protein necessary for mitochondrial transcription initiation
    • Xu B., Clayton D.A. Assignment of a yeast protein necessary for mitochondrial transcription initiation. Nucleic Acids Res. 1992, 20:1053-1059.
    • (1992) Nucleic Acids Res. , vol.20 , pp. 1053-1059
    • Xu, B.1    Clayton, D.A.2
  • 56
    • 0025876118 scopus 로고
    • The yeast mitochondrial RNA polymerase specificity factor, MTF1, is similar to bacterial sigma factors
    • Jang S.H., Jaehning J.A. The yeast mitochondrial RNA polymerase specificity factor, MTF1, is similar to bacterial sigma factors. J. Biol. Chem. 1991, 266:22671-22677.
    • (1991) J. Biol. Chem. , vol.266 , pp. 22671-22677
    • Jang, S.H.1    Jaehning, J.A.2
  • 57
    • 70449807055 scopus 로고    scopus 로고
    • TFB2 is a transient component of the catalytic site of the human mitochondrial RNA polymerase
    • Sologub M., Litonin D., Anikin M., Mustaev A., Temiakov D. TFB2 is a transient component of the catalytic site of the human mitochondrial RNA polymerase. Cell 2009, 139:934-944.
    • (2009) Cell , vol.139 , pp. 934-944
    • Sologub, M.1    Litonin, D.2    Anikin, M.3    Mustaev, A.4    Temiakov, D.5
  • 59
    • 0034808120 scopus 로고    scopus 로고
    • Crystal structure of the transcription factor sc-mtTFB offers insights into mitochondrial transcription
    • Schubot F.D., Chen C.J., Rose J.P., Dailey T.A., Dailey H.A., Wang B.C. Crystal structure of the transcription factor sc-mtTFB offers insights into mitochondrial transcription. Protein Sci. 2001, 10:1980-1988.
    • (2001) Protein Sci. , vol.10 , pp. 1980-1988
    • Schubot, F.D.1    Chen, C.J.2    Rose, J.P.3    Dailey, T.A.4    Dailey, H.A.5    Wang, B.C.6
  • 60
    • 77950506170 scopus 로고    scopus 로고
    • Multiple functions of yeast mitochondrial transcription factor Mtf1p during initiation
    • Savkina M., Temiakov D., McAllister W.T., Anikin M. Multiple functions of yeast mitochondrial transcription factor Mtf1p during initiation. J. Biol. Chem. 2010, 285:3957-3964.
    • (2010) J. Biol. Chem. , vol.285 , pp. 3957-3964
    • Savkina, M.1    Temiakov, D.2    McAllister, W.T.3    Anikin, M.4
  • 61
    • 33751521683 scopus 로고    scopus 로고
    • Evidence for an early gene duplication event in the evolution of the mitochondrial transcription factor B family and maintenance of rRNA methyltransferase activity in human mtTFB1 and mtTFB2
    • Cotney J., Shadel G.S. Evidence for an early gene duplication event in the evolution of the mitochondrial transcription factor B family and maintenance of rRNA methyltransferase activity in human mtTFB1 and mtTFB2. J. Mol. Evol. 2006, 63:707-717.
    • (2006) J. Mol. Evol. , vol.63 , pp. 707-717
    • Cotney, J.1    Shadel, G.S.2
  • 62
    • 0028898897 scopus 로고
    • A Saccharomyces cerevisiae mitochondrial transcription factor, sc-mtTFB, shares features with sigma factors but is functionally distinct
    • Shadel G.S., Clayton D.A. A Saccharomyces cerevisiae mitochondrial transcription factor, sc-mtTFB, shares features with sigma factors but is functionally distinct. Mol. Cell. Biol. 1995, 15:2101-2108.
    • (1995) Mol. Cell. Biol. , vol.15 , pp. 2101-2108
    • Shadel, G.S.1    Clayton, D.A.2
  • 63
    • 0027945504 scopus 로고
    • Release of the yeast mitochondrial RNA polymerase specificity factor from transcription complexes
    • Mangus D.A., Jang S.H., Jaehning J.A. Release of the yeast mitochondrial RNA polymerase specificity factor from transcription complexes. J. Biol. Chem. 1994, 269:26568-26574.
    • (1994) J. Biol. Chem. , vol.269 , pp. 26568-26574
    • Mangus, D.A.1    Jang, S.H.2    Jaehning, J.A.3
  • 64
    • 0033811564 scopus 로고    scopus 로고
    • Identifying a core RNA polymerase surface critical for interactions with a sigma-like specificity factor
    • Cliften P.F., Jang S.H., Jaehning J.A. Identifying a core RNA polymerase surface critical for interactions with a sigma-like specificity factor. Mol. Cell. Biol. 2000, 20:7013-7023.
    • (2000) Mol. Cell. Biol. , vol.20 , pp. 7013-7023
    • Cliften, P.F.1    Jang, S.H.2    Jaehning, J.A.3
  • 66
    • 0022722226 scopus 로고
    • Characterization of the promoter of the large ribosomal RNA gene in yeast mitochondria and separation of mitochondrial RNA polymerase into two different functional components
    • Schinkel A.H., Groot Koerkamp M.J., Van der Horst G.T., Touw E.P., Osinga K.A., Van der Bliek A.M., Veeneman G.H., Van Boom J.H., Tabak H.F. Characterization of the promoter of the large ribosomal RNA gene in yeast mitochondria and separation of mitochondrial RNA polymerase into two different functional components. EMBO J. 1986, 5:1041-1047.
    • (1986) EMBO J. , vol.5 , pp. 1041-1047
    • Schinkel, A.H.1    Groot Koerkamp, M.J.2    Van der Horst, G.T.3    Touw, E.P.4    Osinga, K.A.5    Van der Bliek, A.M.6    Veeneman, G.H.7    Van Boom, J.H.8    Tabak, H.F.9
  • 67
    • 0033609502 scopus 로고    scopus 로고
    • Nucleotide sequences surrounding the nonanucleotide promoter motif influence the activity of yeast mitochondrial promoter
    • Biswas T.K. Nucleotide sequences surrounding the nonanucleotide promoter motif influence the activity of yeast mitochondrial promoter. Biochemistry 1999, 38:9693-9703.
    • (1999) Biochemistry , vol.38 , pp. 9693-9703
    • Biswas, T.K.1
  • 68
    • 0023001709 scopus 로고
    • In vitro transcription and promoter strength analysis of five mitochondrial tRNA promoters in yeast
    • Wettstein-Edwards J., Ticho B.S., Martin N.C., Najarian D., Getz G.S. In vitro transcription and promoter strength analysis of five mitochondrial tRNA promoters in yeast. J. Biol. Chem. 1986, 261:2905-2911.
    • (1986) J. Biol. Chem. , vol.261 , pp. 2905-2911
    • Wettstein-Edwards, J.1    Ticho, B.S.2    Martin, N.C.3    Najarian, D.4    Getz, G.S.5
  • 69
    • 0022541796 scopus 로고
    • Nucleotides flanking the promoter sequence influence the transcription of the yeast mitochondrial gene coding for ATPase subunit 9
    • Biswas T.K., Getz G.S. Nucleotides flanking the promoter sequence influence the transcription of the yeast mitochondrial gene coding for ATPase subunit 9. Proc. Natl. Acad. Sci. U. S. A. 1986, 83:270-274.
    • (1986) Proc. Natl. Acad. Sci. U. S. A. , vol.83 , pp. 270-274
    • Biswas, T.K.1    Getz, G.S.2
  • 70
    • 0025027687 scopus 로고
    • Regulation of transcriptional initiation in yeast mitochondria
    • Biswas T.K., Getz G.S. Regulation of transcriptional initiation in yeast mitochondria. J. Biol. Chem. 1990, 265:19053-19059.
    • (1990) J. Biol. Chem. , vol.265 , pp. 19053-19059
    • Biswas, T.K.1    Getz, G.S.2
  • 71
    • 0032496669 scopus 로고    scopus 로고
    • Usage of non-canonical promoter sequence by the yeast mitochondrial RNA polymerase
    • Biswas T.K. Usage of non-canonical promoter sequence by the yeast mitochondrial RNA polymerase. Gene 1998, 212:305-314.
    • (1998) Gene , vol.212 , pp. 305-314
    • Biswas, T.K.1
  • 72
    • 0022979289 scopus 로고
    • A critical base in the yeast mitochondrial nonanucleotide promoter. Abolition of promoter activity by mutation at the -2 position
    • Biswas T.K., Getz G.S. A critical base in the yeast mitochondrial nonanucleotide promoter. Abolition of promoter activity by mutation at the -2 position. J. Biol. Chem. 1986, 261:3927-3930.
    • (1986) J. Biol. Chem. , vol.261 , pp. 3927-3930
    • Biswas, T.K.1    Getz, G.S.2
  • 73
    • 0023645707 scopus 로고
    • In vitro characterization of the yeast mitochondrial promoter using single-base substitution mutants
    • Biswas T.K., Ticho B., Getz G.S. In vitro characterization of the yeast mitochondrial promoter using single-base substitution mutants. J. Biol. Chem. 1987, 262:13690-13696.
    • (1987) J. Biol. Chem. , vol.262 , pp. 13690-13696
    • Biswas, T.K.1    Ticho, B.2    Getz, G.S.3
  • 74
    • 0036435803 scopus 로고    scopus 로고
    • The energetics of consensus promoter opening by T7 RNA polymerase
    • Bandwar R.P., Patel S.S. The energetics of consensus promoter opening by T7 RNA polymerase. J. Mol. Biol. 2002, 324:63-72.
    • (2002) J. Mol. Biol. , vol.324 , pp. 63-72
    • Bandwar, R.P.1    Patel, S.S.2
  • 75
    • 80055070163 scopus 로고    scopus 로고
    • Transcription factor-dependent DNA bending governs promoter recognition by the mitochondrial RNA polymerase
    • Tang G.Q., Deshpande A.P., Patel S.S. Transcription factor-dependent DNA bending governs promoter recognition by the mitochondrial RNA polymerase. J. Biol. Chem. 2011, 286:38805-38813.
    • (2011) J. Biol. Chem. , vol.286 , pp. 38805-38813
    • Tang, G.Q.1    Deshpande, A.P.2    Patel, S.S.3
  • 76
    • 33645910849 scopus 로고    scopus 로고
    • T7 RNA polymerase-induced bending of promoter DNA is coupled to DNA opening
    • Tang G.Q., Patel S.S. T7 RNA polymerase-induced bending of promoter DNA is coupled to DNA opening. Biochemistry 2006, 45:4936-4946.
    • (2006) Biochemistry , vol.45 , pp. 4936-4946
    • Tang, G.Q.1    Patel, S.S.2
  • 77
    • 0347752416 scopus 로고    scopus 로고
    • Peculiar 2-aminopurine fluorescence monitors the dynamics of open complex formation by bacteriophage T7 RNA polymerase
    • Bandwar R.P., Patel S.S. Peculiar 2-aminopurine fluorescence monitors the dynamics of open complex formation by bacteriophage T7 RNA polymerase. J. Biol. Chem. 2001, 276:14075-14082.
    • (2001) J. Biol. Chem. , vol.276 , pp. 14075-14082
    • Bandwar, R.P.1    Patel, S.S.2
  • 78
    • 65549097265 scopus 로고    scopus 로고
    • Fluorescence mapping of the open complex of yeast mitochondrial RNA polymerase
    • Tang G.Q., Paratkar S., Patel S.S. Fluorescence mapping of the open complex of yeast mitochondrial RNA polymerase. J. Biol. Chem. 2009, 284:5514-5522.
    • (2009) J. Biol. Chem. , vol.284 , pp. 5514-5522
    • Tang, G.Q.1    Paratkar, S.2    Patel, S.S.3
  • 79
    • 0035793105 scopus 로고    scopus 로고
    • 2-Aminopurine fluorescence quenching and lifetimes: role of base stacking
    • Jean J.M., Hall K.B. 2-Aminopurine fluorescence quenching and lifetimes: role of base stacking. Proc. Natl. Acad. Sci. U. S. A. 2001, 98:37-41.
    • (2001) Proc. Natl. Acad. Sci. U. S. A. , vol.98 , pp. 37-41
    • Jean, J.M.1    Hall, K.B.2
  • 80
    • 0032529485 scopus 로고    scopus 로고
    • 2-Aminopurine fluorescence studies of base stacking interactions at abasic sites in DNA: metal-ion and base sequence effects
    • Stivers J.T. 2-Aminopurine fluorescence studies of base stacking interactions at abasic sites in DNA: metal-ion and base sequence effects. Nucleic Acids Res. 1998, 26:3837-3844.
    • (1998) Nucleic Acids Res. , vol.26 , pp. 3837-3844
    • Stivers, J.T.1
  • 81
    • 84855273566 scopus 로고    scopus 로고
    • Opening-closing dynamics of the mitochondrial transcription pre-initiation complex
    • Kim H., Tang G.Q., Patel S.S., Ha T. Opening-closing dynamics of the mitochondrial transcription pre-initiation complex. Nucleic Acids Res. 2011, 40:371-380.
    • (2011) Nucleic Acids Res. , vol.40 , pp. 371-380
    • Kim, H.1    Tang, G.Q.2    Patel, S.S.3    Ha, T.4
  • 82
    • 7244232840 scopus 로고    scopus 로고
    • Intrinsic promoter recognition by a "core" RNA polymerase
    • Matsunaga M., Jaehning J.A. Intrinsic promoter recognition by a "core" RNA polymerase. J. Biol. Chem. 2004, 279:44239-44242.
    • (2004) J. Biol. Chem. , vol.279 , pp. 44239-44242
    • Matsunaga, M.1    Jaehning, J.A.2
  • 83
    • 0037008697 scopus 로고    scopus 로고
    • Mutations in the yeast mitochondrial RNA polymerase specificity factor, Mtf1, verify an essential role in promoter utilization
    • Karlok M.A., Jang S.H., Jaehning J.A. Mutations in the yeast mitochondrial RNA polymerase specificity factor, Mtf1, verify an essential role in promoter utilization. J. Biol. Chem. 2002, 277:28143-28149.
    • (2002) J. Biol. Chem. , vol.277 , pp. 28143-28149
    • Karlok, M.A.1    Jang, S.H.2    Jaehning, J.A.3
  • 84
    • 0037020232 scopus 로고    scopus 로고
    • The +2 NTP binding drives open complex formation in T7 RNA polymerase
    • Stano N.M., Levin M.K., Patel S.S. The +2 NTP binding drives open complex formation in T7 RNA polymerase. J. Biol. Chem. 2002, 277:37292-37300.
    • (2002) J. Biol. Chem. , vol.277 , pp. 37292-37300
    • Stano, N.M.1    Levin, M.K.2    Patel, S.S.3
  • 85
    • 2442609748 scopus 로고    scopus 로고
    • Mechanism of stimulation of ribosomal promoters by binding of the +1 and +2 nucleotides
    • Lew C.M., Gralla J.D. Mechanism of stimulation of ribosomal promoters by binding of the +1 and +2 nucleotides. J. Biol. Chem. 2004, 279:19481-19485.
    • (2004) J. Biol. Chem. , vol.279 , pp. 19481-19485
    • Lew, C.M.1    Gralla, J.D.2
  • 86
    • 33845963664 scopus 로고    scopus 로고
    • Sensitivity of the yeast mitochondrial RNA polymerase to +1 and +2 initiating nucleotides
    • Amiott E.A., Jaehning J.A. Sensitivity of the yeast mitochondrial RNA polymerase to +1 and +2 initiating nucleotides. J. Biol. Chem. 2006, 281:34982-34988.
    • (2006) J. Biol. Chem. , vol.281 , pp. 34982-34988
    • Amiott, E.A.1    Jaehning, J.A.2
  • 87
    • 0022978145 scopus 로고
    • Transcriptional regulation of the mitochondrial genome of yeast Saccharomyces cerevisiae
    • Mueller D.M., Getz G.S. Transcriptional regulation of the mitochondrial genome of yeast Saccharomyces cerevisiae. J. Biol. Chem. 1986, 261:11756-11764.
    • (1986) J. Biol. Chem. , vol.261 , pp. 11756-11764
    • Mueller, D.M.1    Getz, G.S.2
  • 88
    • 0025634027 scopus 로고
    • Control of mitochondrial gene expression in the yeast Saccharomyces cerevisiae
    • Biswas T.K. Control of mitochondrial gene expression in the yeast Saccharomyces cerevisiae. Proc. Natl. Acad. Sci. U. S. A. 1990, 87:9338-9342.
    • (1990) Proc. Natl. Acad. Sci. U. S. A. , vol.87 , pp. 9338-9342
    • Biswas, T.K.1
  • 89
    • 0028287665 scopus 로고
    • MTF1, encoding the yeast mitochondrial RNA polymerase specificity factor, is located on chromosome XIII
    • Ulery T.L., Jaehning J.A. MTF1, encoding the yeast mitochondrial RNA polymerase specificity factor, is located on chromosome XIII. Yeast 1994, 10:839-841.
    • (1994) Yeast , vol.10 , pp. 839-841
    • Ulery, T.L.1    Jaehning, J.A.2
  • 90
    • 33646163885 scopus 로고    scopus 로고
    • Mitochondrial transcription is regulated via an ATP "sensing" mechanism that couples RNA abundance to respiration
    • Amiott E.A., Jaehning J.A. Mitochondrial transcription is regulated via an ATP "sensing" mechanism that couples RNA abundance to respiration. Mol. Cell 2006, 22:329-338.
    • (2006) Mol. Cell , vol.22 , pp. 329-338
    • Amiott, E.A.1    Jaehning, J.A.2
  • 91
    • 0029116754 scopus 로고
    • Mitochondrial transcription initiation: promoter structures and RNA polymerases
    • Tracy R.L., Stern D.B. Mitochondrial transcription initiation: promoter structures and RNA polymerases. Curr. Genet. 1995, 28:205-216.
    • (1995) Curr. Genet. , vol.28 , pp. 205-216
    • Tracy, R.L.1    Stern, D.B.2
  • 93
    • 0037133504 scopus 로고    scopus 로고
    • Kinetic and thermodynamic basis of promoter strength: multiple steps of transcription initiation by T7 RNA polymerase are modulated by the promoter sequence
    • Bandwar R.P., Jia Y., Stano N.M., Patel S.S. Kinetic and thermodynamic basis of promoter strength: multiple steps of transcription initiation by T7 RNA polymerase are modulated by the promoter sequence. Biochemistry 2002, 41:3586-3595.
    • (2002) Biochemistry , vol.41 , pp. 3586-3595
    • Bandwar, R.P.1    Jia, Y.2    Stano, N.M.3    Patel, S.S.4
  • 94
    • 33745232330 scopus 로고    scopus 로고
    • Sequential release of promoter contacts during transcription initiation to elongation transition
    • Bandwar R.P., Tang G.Q., Patel S.S. Sequential release of promoter contacts during transcription initiation to elongation transition. J. Mol. Biol. 2006, 360:466-483.
    • (2006) J. Mol. Biol. , vol.360 , pp. 466-483
    • Bandwar, R.P.1    Tang, G.Q.2    Patel, S.S.3
  • 95
    • 0026720389 scopus 로고
    • Transcriptional commitment of mitochondrial RNA polymerase from Saccharomyces cerevisiae
    • Biswas T.K. Transcriptional commitment of mitochondrial RNA polymerase from Saccharomyces cerevisiae. J. Mol. Biol. 1992, 226:335-347.
    • (1992) J. Mol. Biol. , vol.226 , pp. 335-347
    • Biswas, T.K.1
  • 96
    • 4944262080 scopus 로고    scopus 로고
    • Initial bubble collapse plays a key role in the transition to elongation in T7 RNA polymerase
    • Gong P., Esposito E.A., Martin C.T. Initial bubble collapse plays a key role in the transition to elongation in T7 RNA polymerase. J. Biol. Chem. 2004, 279:44277-44285.
    • (2004) J. Biol. Chem. , vol.279 , pp. 44277-44285
    • Gong, P.1    Esposito, E.A.2    Martin, C.T.3
  • 97
    • 33747621427 scopus 로고    scopus 로고
    • Visualizing polynucleotide polymerase machines at work
    • Steitz T.A. Visualizing polynucleotide polymerase machines at work. EMBO J. 2006, 25:3458-3468.
    • (2006) EMBO J. , vol.25 , pp. 3458-3468
    • Steitz, T.A.1
  • 98
    • 34249681855 scopus 로고    scopus 로고
    • Twisted or shifted? Fluorescence measurements of late intermediates in transcription initiation by T7 RNA polymerase
    • Turingan R.S., Theis K., Martin C.T. Twisted or shifted? Fluorescence measurements of late intermediates in transcription initiation by T7 RNA polymerase. Biochemistry 2007, 46:6165-6168.
    • (2007) Biochemistry , vol.46 , pp. 6165-6168
    • Turingan, R.S.1    Theis, K.2    Martin, C.T.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.