Nucleotide sequences surrounding the nonanucleotide promoter motif influence the activity of yeast mitochondrial promoter

Biochemistry

Volumn 38, Issue 30, 1999, Pages 9693-9703

  Biswas, Tapan K ^a  

^a UNIVERSITY OF CHICAGO   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

FUNGAL DNA; MITOCHONDRIAL DNA; OLIGODEOXYNUCLEOTIDE; URIDINE TRIPHOSPHATE;

ARTICLE; CONCENTRATION RESPONSE; CONTROLLED STUDY; DNA CONFORMATION; DNA DETERMINATION; DNA SEQUENCE; DNA TEMPLATE; FUNGAL GENETICS; GENE FUNCTION; MOLECULAR DYNAMICS; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROMOTER REGION; SITE DIRECTED MUTAGENESIS; STRUCTURE ACTIVITY RELATION; TRANSCRIPTION REGULATION; YEAST;

3' UNTRANSLATED REGIONS; BASE SEQUENCE; DNA, FUNGAL; GENOME, FUNGAL; MITOCHONDRIA; OLIGODEOXYRIBONUCLEOTIDES; PEPTIDE CHAIN INITIATION, TRANSLATIONAL; PEPTIDE CHAIN TERMINATION, TRANSLATIONAL; POLY T; PROMOTER REGIONS (GENETICS); SACCHAROMYCES CEREVISIAE; TANDEM REPEAT SEQUENCES; TRANSCRIPTION, GENETIC;

BACTERIA (MICROORGANISMS); FUNGI; MYXOGASTRIA;

EID: 0033609502     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi982804l     Document Type: Article

References (76)

1. Tzagoloff, A., and Myers, A. M. (1986) Annu. Rev. Biochem. 55, 249-285.
2. Attardi, G., and Schatz, G. (1988) Annu. Rev. Cell Biol. 4, 289-333.
3. Costanzo, M. C., and Fox, T. D. (1990) Annu. Rev. Genet. 24, 91-113.
4. Grivell, L. A. (1995) Crit. Rev. Biochem. Mol. Biol. 30, 121-164.
5. Osinga, K. A., and Tabak, H. K. (1982) Nucleic Acids Res. 10, 3617-3626.
6. Christianson, T., and Rabinowitz, M. (1983) J. Biol. Chem. 258, 14025-14033.
7. Biswas, T. K., Edwards, J. C., Rabinowitz, M., and Getz, G. S. (1985) Proc. Natl. Acad. Sci. U.S.A. 82, 1954-1958.
8. Biswas, T. K., Ticho, B., and Getz, G. S. (1987) J. Biol. Chem. 262, 13690-13696.
9. Schinkel, A. H., Groot Koerkamp, M. J., and Tabak, H. F. (1988) EMBO J. 7, 3255-3262.
10. Biswas, T. K. (1998) Gene 212, 305-314.
11. Winkley, C. S., Keller, M. J., and Jaehning, J. A. (1985) J. Biol. Chem. 260, 14214-14223.
12. Schinkel, A. H., Groot Koerkamp, M. J. A., Touw, E. P. W., and Tabak, H. F. (1987) J. Biol. Chem. 262, 12785-12791.
13. Ticho, B. S., and Getz, G. S. (1988) J. Biol. Chem. 263, 10096-10103.
14. Lisowsky, T., and Michaelis, G. (1988) Mol. Gen. Genet. 214, 218-223.
15. Jang, S. H., and Jaehning, J. A. (1991) J. Biol. Chem. 266, 22671-22677.
16. Masters, B. S., Stohl, L. L., and Clayton, D. A. (1987) Cell 51, 89-99.
17. Baldacci, G., Cherif-Zahar, B., and Bernardi, G. (1984) EMBO J. 3, 2115-2120.
18. Greenleaf, A. L., Kelly, J. L., and Lehman, I. R. (1986) Proc. Natl. Acad. Sci. U.S.A. 83, 3391-3394.
19. Munson, L. M., and Reznikoff, W. S. (1981) Biochemistry 20, 2081-2085.
20. Ling, M.-L., Risman, S. S., Klement, J. F., McGraw, N., and McAllister, W. T. (1989) Nucleic Acids Res. 17, 1605-1618.
21. Biswas, T. K. (1992) J. Mol. Biol. 226, 335-347.
22. Mangus, D. A., Jang, S. H., and Jaehning, J. A. (1994) J. Biol. Chem. 269, 26568-26574.
23. Mueller, D. M., and Getz, G. S. (1986) J. Biol. Chem. 261, 11756-11764.
24. Biswas, T. K., and Getz, G. S. (1986) Proc. Natl. Acad. Sci. U.S.A. 83, 270-274.
25. Wettstein-Edwards, J., Ticho, B. S., Martin, N. C., Najarian, D., and Getz, G. S. (1986) J. Biol. Chem. 261, 2905-2911.
26. Biswas, T. K. (1991) Nucleic Acids Res. 19, 5937-5942.
27. Lopez, P. J., Guillerez, J., Sousa, R., and Dreyfus, M. (1997) J. Mol. Biol. 269, 41-51.
28. Biswas, T. K., and Getz, G. S. (1998) J. Mol. Biol. 275, 547-560.
29. Biswas, T. K. (1990) Proc. Natl. Acad. Sci. U.S.A. 87, 9338-9342.
30. Cameron, V. L., Fox, T. D., and Poyton, R. O. (1989) J. Biol. Chem. 264, 13391-13394.
31. Biswas, T. K. (1996) Gene 170, 23-30.
32. Palleschi, C., Francisci, S., Zennaro, E., and Frontali, L. (1984) EMBO J. 3, 1389-1395.
33. Macdonald, L. E., Zhou, Y., and McAllister, W. T. (1993) J. Mol. Biol. 232, 1030-1047.
34. Platt, T. (1986) Annu. Rev. Biochem. 55, 339-372.
35. Bengal, E., and Aloni, Y. (1989) J. Biol. Chem. 264, 9791-9798.
36. Reynolds, R., Bermudez-Cruz, R. M., and Chamberlin, M. J. (1992) J. Mol. Biol. 224, 31-51.
37. Martin, F., and Tinoco, I. (1980) Nucleic Acids Res. 8, 2295-2299.
38. Landick, R. (1997) Cell 88, 741-744.
39. Donahue, J. P., and Turnbough, C. L. Jr. (1994) J. Biol. Chem. 269, 18185-18191.
40. Jin, D. J., and Turnbough, C. L. Jr. (1994) J. Mol. Biol. 236, 72-80.
41. Biswas, T. K., and Getz, G. S. (1988) J. Biol. Chem. 263, 4844-4851.
42. McClure, W. R. (1985) Annu. Rev. Biochem. 54, 171-404.
43. Yanofsky, C., Konan, K. V., and Sarsero, J. P. (1996) Biochimie 78, 1017-1024.
44. Von Hippel, P. H., Rees, W. A., Rippe, K., and Wilson, K. S. (1996) Biophys. Chem. 59, 231-246.
45. Henkin, T. M. (1996) Annu. Rev. Genet. 30, 35-57.
46. Uptain, S. M., Kane, C. M., and Chamberlin, M. J. (1997) Annu. Rev. Biochem. 66, 117-172.
47. Johnson, P. F., and McKnight, S. L. (1989) Annu. Rev. Biochem. 58, 799-840.
48. Reeder, R. H., and Lang, W. H. (1997) Trends Biochem. Sci. 22, 473-477.
49. von Hippel, P. H. (1998) Science 281, 660-665.
50. Kabata, H., Kurosawa, O., Arai, I., Washizu, M., Margarson, S. A., Glass, R. E., and Shimamoto, N. (1993) Science 262, 1561-1563.
51. Guajardo, R., and Sousa, R. (1997) J. Mol. Biol. 265, 8-19.
52. Coleman, R. A., and Pugh, B. F. (1995) J. Biol. Chem. 270, 13850-13859.
53. Tinker-Kulberg, R. L., Fu, T. J., Geiduschek, E. P., and Kassavetis, G. A. (1996) EMBO J. 15, 5032-5039.
54. Corpousis, A. J., and Gralla, J. D. (1985) J. Mol. Biol. 183, 165-177.
55. Krummel, B., and Chamberlin, M. J. (1989) Biochemistry 28, 7829-7842.
56. Luse, D. S., and Jacob, G. A. (1987) J. Biol. Chem. 262, 14990-14997.
57. Keene, R. G., and Luse, D. S. (1999) J. Biol. Chem. 274, 11526-11534.
58. Sun, J. H., and Kao, C. C. (1997) Virology 236, 348-353.
59. Reeder, T. C., and Hawley, D. K. (1996) Cell 87, 767-777.
60. Nudler, E., Mustaev, A., Lukhtanov, E., and Goldfarb, A. (1997) Cell 89, 33-41.
61. Komissarova, N., and Kashlev, M. (1998) Proc. Natl. Acad. Sci. U.S.A. 95, 14699-14704.
62. Hartvig, L., and Christiansen, J. (1996) EMBO J. 15, 4767-4774.
63. Nam, S. C., and Kang, C. W. (1988) J. Biol. Chem. 263, 18123-18127.
64. Christianson, T. W., and Clayton, D. A. (1988) Mol. Cell. Biol. 8, 4502-4509.
65. Tomizawa, J., and Masukata, H. (1987) Cell 51, 623-630.
66. Mason, S. W., Wallisch, M., and Grummt, I. (1997) J. Mol. Biol. 268, 229-234.
67. Jeong, S. W., Lang, W. H., and Reeder, R. H. (1996) J. Biol. Chem. 271, 16104-16110.
68. Beak, K.-H., Sato, K., Ito, R., and Agarwal, K. (1986) Proc. Natl. Acad. Sci. U.S.A. 83, 7623-7627.
69. Dedrick, R. L., Kane, C. M., and Chamberlin, M. J. (1987) J. Biol. Chem. 262, 9098-9108.
70. Kerppola, T. K., and Kane, C. M. (1990) Biochemistry 29, 269-278.
71. Bogenhagen, D. F., and Brown, D. D. (1981) Cell 24, 261-270.
72. Allison, D. S., and Hall, B. D. (1985) EMBO J. 4, 2657-2664.
73. Matsuzaki, H., Kassavetis, G. A., and Geiduschek, E. P. (1994) J. Mol. Biol. 235, 1173-1192.
74. Arnott, S., Chandrasekaran, R., Millane, R. P., and Park, H. S. (1986) J. Mol. Biol. 188, 631-640.
75. Koo, H.-S., Wu, H.-M., and Crothers, D. M. (1986) Nature 320, 501-506.
76. Leven, J. R., and Chamberlin, M. J. (1987) J. Mol. Biol. 196, 61-84.